Replaced direct console output with logging in client
Replaced direct console output with logging in core
Replaced direct console output with logging in fsm
Replaced direct console output with logging in storage
Merge branches 'development' and 'documentation' of https://github.com/ngmon/ngmon into development

Conflicts:
	core/src/main/java/cz/muni/fi/xtovarn/heimdall/Application.java
	core/src/main/java/cz/muni/fi/xtovarn/heimdall/collector/SocketCollector.java
	core/src/main/java/cz/muni/fi/xtovarn/heimdall/dispatcher/Dispatcher.java
	core/src/main/java/cz/muni/fi/xtovarn/heimdall/pipeline/handler/ParseJSON.java
	core/src/main/java/cz/muni/fi/xtovarn/heimdall/pipeline/handler/Store.java
* CRLF