Centralize retrieval of genome build alignment and reference files to a single location in code, populating data dictionary. Move parsing of genome configuration inputs to a separate namespace
Move specification of variation and trascript resources into an organism specific resources file. Enables support for additional organisms and genome builds
Remove hardcoding of mappings from genome builds to Ensembl and snpEff genome names. Use values defined in genome specific resources files. Enables support for custom genomes and more organisms
Automate installation of organism specific resource files through updater/installer. Include resources files for supported organisms and builds.