add alternative data structure version of duplicate marking (first version with lots of debug code, so expected to be slow)
fixes for duplicate marking v2
add new fragment processing for bammarkduplicates2
add timing for bammarkduplicates
add bammarkduplicates2 in Makefile.am
ensure expunge position does not move backwards
remove debugging messages
update libmaus dependency in configure.in
update libmaus dependency
- add and install manual page for bammarkduplicates2
- install bammarkduplicates2
bump version after adding bammarkduplicates2