On branch rfm_dev
 Changes to be committed:
   (use "git reset HEAD <file>..." to unstage)

	modified:   Makefile
	modified:   Makefile_x86_64
	deleted:    SNP.cpp
	deleted:    SNP.h
	deleted:    biopRefAllele.cpp
	deleted:    biopRefAllele.h
	new file:   proto.cpp
	new file:   sample.cpp
	modified:   sample.h
	new file:   site.cpp
	new file:   site.h
	deleted:    stacksDB.cpp
	deleted:    stacksDB.h
	deleted:    stacksToVCF.cpp
	new file:   tag.cpp
	new file:   tag.h