trunk
Adding cgi-dir
Adding html files
rearranging
more moving
Added favicon.ico
1. Changed html links to use absolute paths
2. Fixed a few error reporting bugs
3. Removed explicit TYPEs from Query.pm
4. Added packaging scripts
Added hotbackup script
Changed bg color to white on all pages
  -- updated links
  -- updated images
  -- still need to update FAQ's
Created Ant task to deploy the web application

search.pl and get_genes_by_eid.pl now " use lib"
instead of relying on Apache to pass in the 
correct params
Updated plot code
demo
demo2
Added legend data to source control
Renamed data to the correct name
Updated Gandhi
added db dir and step1 script to load GO tables into mysql
added step2 script, updated README appropriately
added step3_load_gene_model_table.pl and updated the README
updated and revised step4 script, created and loaded enrichment table