random stuff
Merge remote-tracking branch 'mothur/master'
changed random forest output filename
adding code for confusion matrix
adding code for confusion matrix
adding code for confusion matrix
adding pretty confusion matrix
adding pretty confusion matrix
adding misclassification output file
adding misclassification output file
adding misclassification output file
adding misclassification output file
changing command name classify.shared to classifyrf.shared
added lefse command. added check for hard filter length.  fixed bug in make.biom when multiple labels in shared file. added index file to make.contigs. fixed weird output in summary.seqs for mean values. added checks for edianness in sffinfo when oligos file is used. shhh.flows fix for reads longer than 1024. fixed bug in split.groups with count file. added several functions to linearalegra for lefse.
Merge remote-tracking branch 'origin'
changed classifysvm.shared to classify.svm
merged XCode project file manually
not finished merging after all
finished merge