normalized "from-to". modified ChunkOR process
removed output folder
fixed a bunch of exceptions
Merge branch 'dev' of https://github.com/phenoscape/phenoscape-nlp.git
into dev

Conflicts:
	phenoscapeII/src/outputter/CharacterHandler.java
	phenoscapeII/src/outputter/EntityParser.java
	phenoscapeII/src/outputter/StateStatementParser.java
	phenoscapeII/src/outputter/Structure2Quality.java