Update config files
Add docs
Update section names in config
Update config to reflect new naming conventions
Fix varianthalo config
Fix BwaSampe -> Sampe in align.yaml
Add ref
Fix merge conflict
final updates to remove _config_section
Merge branch 'feature/remove_config_section' into develop
Fix merge conflict
Merge sample from develop
Use Bampe in pipelines
Add intersphinx config
Add docs
Remove option-to-dict transformation. Fixes issue #1
Add generic target generator functions
Update docs
Merge remote branch 'origin/master'
Add docs