util: BinarySerializer serializes and deserializes a file format version tag with every cubbie. This allows keeping old deserialization code around and working even as we improve things.
changed parse based mention finding to resolve duplicate mentions with the same boundary by taking the named one. Previously this was nondeterministic. We should always take the named one, since we often filter to just use the named Mentions downstream. This also gives deterministic features for coref.
la: adding specialized override for leftMultiply in layered tensor 2
Merge pull request #58 from harshal-pandya/master

Removed deprecations: Replaced Manifests with ClassTag
Merge pull request #62 from davidBelanger/mention-dedup-fix

Mention deduplication fix
fix failing tests
add "initializeWeights" and "finalizeWeights" to GradientOptimizer
optimize,classify: switching the classifiers to use leftMultiply instead of right multiply for better locality. Breaks serialized models for pos1 and parser1
TODO: Notes for next sprint.
optimize: making ParameterAveraging and AdaGrad behave well with the GradientStep changes; making initialization happen in a single thread for both
optimize: removing useless reimplementation of inheritance
Merge pull request #65 from alextp/weights-finalizers

Weights finalizers
tests: fix breakage
model: removing ModelWithContext, as it is no longer used
app.chain: faster chain bp and example
Fixes to initialize blank weights in AdaGrad and ParameterAveraging
Merge pull request #66 from JackSullivan/merge-adagrad-fix

Fixes to initialize blank weights in AdaGrad and ParameterAveraging
app.chain: flipping the direction of the factor in ChainModel
add fast chain viterbi and speed up chain FB slightly
fix build after name change to ChainModel inference (also fix some warnings)