Call python_fix_shebang in sci-physics/abinit-7.4.2 only conditionally, if USE test (does not work without python-single-r1_pkg_setup, which is don only if USE test or scripts).

Package-Manager: portage-2.2.7
sci-chemistry/freeon-1.0.6: Version bump.

Package-Manager: portage-2.2.1
sci-physics/root: version bump (bug 486620)
app-doc/root-docs: version bump

Synced to sci-physics/root bumped by bug 486620.
sci-physics/root: fix USE flags in the ebuild
sci-physics/root: add minimal USE flag
app-doc/root-docs: use --honowto in configure
Bump petsc to 3.4.2, include support for scotch and mumps

Bump PETSc to version 3.4.2. This commit also includes use flags for scotch
and mumps support
Bump p4est to version 0.3.4.2

This commit bumps p4est to version 0.3.4.2. Also add a use flag
"vtk-binary" to toggle the output format for vtk files.
sync with gx86

Package-Manager: portage-2.2.1
sci-chemistry/phenix-bin: Version Bump

Package-Manager: portage-2.2.7
sci-physics/abinit-7.4.2 patched to link libstdc++ with the C++ CUDA objects.

Package-Manager: portage-2.2.7
sci-libs/atlas: Set cpu freq governor without sys-power/cpufrequtils, #487882

Package-Manager: portage-2.2.7
sci-libs/atlas: Fix type _cpufreq -> cpufreq

Package-Manager: portage-2.2.7
sci-chemistry/namd-2.9: A little cleanup in ebuild.

Package-Manager: portage-2.2.1
sys-cluster/charm-6.5.1-r2: Fixed shared library bug.

When charm is built with --enable-shared, not all libraries are actually built
as shared libraries. I have reported this bug upstream and submitted a patch.
I backported this patch and added it to this revision.

Package-Manager: portage-2.2.1
Merge branch 'master' of github.com:gentoo-science/sci
sys-cluster/charm-6.5.1-r2: Updated static library patch with upstream patch.

Package-Manager: portage-2.2.1
sci-geosciences/qgis: Bump to python r1 eclasses

Package-Manager: portage-2.2.7
sci-geosciences/qgis: Import tree changes

Package-Manager: portage-2.2.7