Add debugging info to MergeSamFiles
Add test_functions
Start developing name_prefix function
Add SeqCap workflow.
Fix link
Ditta
Add option for custom file parsing
Add and validate that custom-config doesn't modify parent_task
Update docs
Add documentation
Add documentation on how to add a wrapper.
add resync mates
Additions to halo pipeline
Add gz suffix in cutadapt job runner
Add --use-long-names option to use short names in graphviz representation by default
Add new haloplex figure
Add picard metrics to halo pipeline
Update haloplex workflow image
Add information about HaloPlex command
Update image and config file