initial push of project config command
Fixes for use of hashref in getting/creating models.
Use "values" for simplicity.
Add a mechanism for specifying instrument data properties to be added to the model.
Continue adding functionality for new CQID service.

Basic error handling added, support for multiple models of the same
type on a single piece of instrument data. Instrument Data status
attribute support.
add archive_after_time property
fixed minor typo
make indel normalization use joinx 1.7
whitespace
expand short options for easier readability
remove --insecure option from curl

The TCGA website appears to have a valid SSL certificate so --insecure
should not be required.
fail better

Add the --fail option to curl so it will suppress error content in
response.  Otherwise the error content is passed on to the JSON parser
which crashes with an indirect cause.
updated jenkins submodule to f9f4bd6
updated jenkins submodule to 4bd4ee7
Only count time for the set aggregation function when computing allocated_kb

Before it may have included the time to connect to the DB in many cases
use LWP instead of curl so we can better check failures
whitespace
remove comments
add -h and --help options to genome-test-env
cleanup and changes to .gitignore