updated file names and module macros in their respective CMake files
cmake step finished
updates all header file names and function signatures to match those of the cyclus update
updated readme and setup.py, removing cyclopts
renamed remaining func changes from cyclus
fixes python script func to not be CapCase - oops.
Merge pull request #124 from rwcarlsen/fnames-new

renamed remaining func changes from cyclus
fixed typedef names to CapCase
fixed typo - Mst to Msg
fixed remaining typos
Merge pull request #125 from rwcarlsen/typedef

typedefs to CapCase
fixed formatting issues
Merge branch 'doc-hotfix' of github.com:gidden/cycamore into gidden-doc-hotfix
started ns
added cycamore ns, fails to compile
it builds
deleted commented includes
adds cycamore namespace to all modules
updated some function names
renamed cycamore module funcs to be CapCase