ryu-manager: stop modifying CONF.app_list

to make cli show-options a little prettier.

Signed-off-by: YAMAMOTO Takashi <yamamoto@valinux.co.jp>
Signed-off-by: FUJITA Tomonori <fujita.tomonori@lab.ntt.co.jp>
log-cleanup: remove an unused logger instance

Signed-off-by: YAMAMOTO Takashi <yamamoto@valinux.co.jp>
Signed-off-by: FUJITA Tomonori <fujita.tomonori@lab.ntt.co.jp>
log-cleanup: remove an unused logger instance

Signed-off-by: YAMAMOTO Takashi <yamamoto@valinux.co.jp>
Signed-off-by: FUJITA Tomonori <fujita.tomonori@lab.ntt.co.jp>
log-cleanup: per RyuApp logger

let RyuApp provide its own logger.
use it instead of per-module logger where appropriate.

Signed-off-by: YAMAMOTO Takashi <yamamoto@valinux.co.jp>
Signed-off-by: FUJITA Tomonori <fujita.tomonori@lab.ntt.co.jp>
log-cleanup: honor --default-log-level in case of --verbose

if the default log level is explicitly specified by --default-log-level
option, use the level rather than defaulting to logging.DEBUG.

Signed-off-by: YAMAMOTO Takashi <yamamoto@valinux.co.jp>
Signed-off-by: FUJITA Tomonori <fujita.tomonori@lab.ntt.co.jp>