* add method for extracting cigar operations vector
* fix method for setting sequence in BAM entry
* add method for resizing AutoArray objects (reallocation + copying)
add serialisation and deserialisation to LookupIntervalTree class
fix LookupIntervalTree serialisation
make function for replacing sequence in bam alignment block also replace quality
adjust parameters in bam to fastq test program
fix bam alignment name comparator for alignments with equal name
add network based fastq decoder for single interval
add fastq/fasta server variant for serving arbitrary fragments
make scaling factor between LSF memory requirement statements an option