#268 New API coming soon. Began setting up for ontology mapping stuff, but that is not available yet. Will come back to this later.
#268 Added ontology search service new API use. Refactored, cleaned up, sundry other minor improvements. Ready for piecemeal upgrade to the new API, but cannot merge to master until it is completely done.
#268 Progress on new API usage. It's kind of messy. I will likely move towards using the unit tests to drive this, but that's hard if I want to keep making a new package for the new APIs without destroying the old stuff. I'll sort it out.
#268 Merging master.
Temporary branch to pass changes to work from home.
#268 Working on ontology mappign overview for new API conversion, since I am most familiar there. Cleaning out old system since it is defunct. See alert boxes and commit efforts for where to pick up from.
#268 Set up ontology overview graph to use the new API. Also tried to excise virtual ontology id and ontology id variables and concepts. Much to be done in all remaining visualizations, REST callers, and parsers.
#268 Have more work done for term neighborhood, some done for mappings neighborhood and path to root. Looking into bug where sometimes arcs don't show up for the term neighborhood. Also, the has_a relations are not available in the new API apparently, so they do not manifest.
Merge branch 'issue268_temp' into issue268_new_rest_api
#268 Fixed bug of missing arcs. Was failing to properly combine partial properties.
#268 Path to root is working pretty well.
#268 #302 Got composition relations working with the new API. Made some changes to resource instantiation, and to the way that properties are handled on resources. Renamed partial properties to be more like what they are, which was relational properties. Also fixed latent bug of misdirected arrows for composition relations.
#308 Fixed some infinite recursions in graph layout DAG building. Some layouts still misbehaving.
#308 Fixed radial layouts by putting arc constructor argument order back the way it was for composition arcs. Changed label to match existing arrow head and is-a labels.
#307 Handling multiple pages for child expansions.
#268 Mapping embed and expander is now working with new API.
#312 Removed old XML parsers, a few json parsers that are not needed and are for the old API.
#312 Removed more unneeded classes
#268 Fixed up concept search, and some accumulated bugs.
#268 Fixed ontology search in dashboard to use new REST call. Updated display of results to be more useful. Changed to search on acronym and ontology name.