added soap v 2.23
Updated `genome` tab completion.
Updated `gmt` tab completion.
fixed bugs
added option for output directory
added option for removing tmp files at end
test file
Switched to joinx1.7
Updated `genome` tab completion.
Updated `gmt` tab completion.
Minor updates to clin-seq update-analysis and get-variant-sources
ClinSeq - build diffs check out, blessing new build
exposing minwidth option
Updated `genome` tab completion.
Updated `gmt` tab completion.
Add a simple test for gmt vcf cleanup-vcf
updating blessed builds
CHORI libraries need their first 2 bases clipped
update blessed build
fix warning