Created experimental branch for C-Sibelia
Updated readme for C-Sibelia
add vcf variant output support
Added rearrangement classes
Merge branch 'c_sibelia_unstable' of github.com:bioinf/Sibelia into c_sibelia_unstable
Added simple rearrangements detection
Changed rearrangements detection
Added simple rearrangements detection
Revert "Updated rearrangements detection."

This reverts commit e79fc5e901448070cdf56702d1411ae95d5db362.
Fixed problems with gcc
Fixed C-Sibelia installation.
improve variants output
add script for variant annotation
simplerarrangements
Fixed compilation issues
improve code style
add vcf template to resources
fix permutations construction
Added variant confirmation
untracked files on c_sibelia_devel: a381589 Added variant confirmation