Bugfix for Hibernate: a.b.id = 42 does not work anymore. Instead use join between a and b. In addition use left (outer) join so that queries for null become possible.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9009 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
small bug fix for JPA

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9013 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
small bug fix for JPA

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9013 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Working on Plink format file writers.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9014 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Working on Plink format file writers.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9014 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Added Harm-Jan's TriTyper reader to utils.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9015 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Added Harm-Jan's TriTyper reader to utils.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9015 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
run button icon (used in MOLGENIS/Compute)

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9016 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
run button icon (used in MOLGENIS/Compute)

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9016 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Adding the option of showDescription in Text fields of forms. 

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9027 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Adding the option of showDescription in Text fields of forms. 

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9027 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Bugfix for jpa: In order to use persistent objects we must not use two instances of the Database class within one servlet instance. Both getDatabase() methods in MolgenisServlet must return the same object. However, this is not a singleton since different servlet instances don't share the same Database object. Please report if this leads to problems.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9045 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Bugfix for jpa: In order to use persistent objects we must not use two instances of the Database class within one servlet instance. Both getDatabase() methods in MolgenisServlet must return the same object. However, this is not a singleton since different servlet instances don't share the same Database object. Please report if this leads to problems.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9045 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Enabled description popup, as discussed with Morris. TODO: make it a molgenis option, default true.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9055 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Enabled description popup, as discussed with Morris. TODO: make it a molgenis option, default true.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9055 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Fix For FillMeta data. Admin user is created outside of molgenis database (this prevent chicken egg problem)

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9062 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Fix For FillMeta data. Admin user is created outside of molgenis database (this prevent chicken egg problem)

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9062 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Added simple plugin to import/export database dumps through .tar.gz archives. CsvExport fix: do not export system tables. CsvImport fix: throw exceptions. Datamodel fix: ontology no longer system table.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9063 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Added simple plugin to import/export database dumps through .tar.gz archives. CsvExport fix: do not export system tables. CsvImport fix: throw exceptions. Datamodel fix: ontology no longer system table.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9063 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Fixing CSV test: excluded system tables from test. Made ontology a non-system table so it works. TODO: make special 'exportSystem' functions next to regular 'exportAll'? It is not desirable to have system records amongst your export because this hinders subsequent imports. (which can only be done after an application has been setup with system tables regarding users and security, which causes conflicts)

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9064 42de9c89-b41c-0410-9fa9-f33e7b6bda7a