Added the StimulGL Main Application Scripting reference

Updated the Javascript Config file
Minor changes
Merge remote-tracking branch 'fdpsrv0015/gh-pages' into gh-pages

Conflicts:
	References/QtQuick/StimulGL_QMLExtensions/Doxygen/_phonon_player_8h_source.html
	References/QtQuick/StimulGL_QMLExtensions/Doxygen/annotated.html
	References/QtQuick/StimulGL_QMLExtensions/Doxygen/class_phonon_player-members.html
	References/QtQuick/StimulGL_QMLExtensions/Doxygen/class_phonon_player.html
	References/QtQuick/StimulGL_QMLExtensions/Doxygen/classes.html
	References/QtQuick/StimulGL_QMLExtensions/Doxygen/files.html
	References/QtQuick/StimulGL_QMLExtensions/Doxygen/functions.html
	References/QtQuick/StimulGL_QMLExtensions/Doxygen/functions_func.html
	References/QtQuick/StimulGL_QMLExtensions/Doxygen/index.html
	References/Script/ExperimentManagerPlugin/Doxygen/_experiment_manager_8h_source.html
	References/Script/ExperimentManagerPlugin/Doxygen/_g_l_widget_wrapper_8h_source.html
	References/Script/ExperimentManagerPlugin/Doxygen/_global_8h_source.html
	References/Script/ExperimentManagerPlugin/Doxygen/_image_processor_8h_source.html
	References/Script/ExperimentManagerPlugin/Doxygen/_random_generator_8h_source.html
	References/Script/ExperimentManagerPlugin/Doxygen/_trigger_timer_8h_source.html
	References/Script/ExperimentManagerPlugin/Doxygen/annotated.html
	References/Script/ExperimentManagerPlugin/Doxygen/class_experiment_manager-members.html
	References/Script/ExperimentManagerPlugin/Doxygen/class_experiment_manager.html
	References/Script/ExperimentManagerPlugin/Doxygen/class_g_l_widget_wrapper-members.html
	References/Script/ExperimentManagerPlugin/Doxygen/class_g_l_widget_wrapper.html
	References/Script/ExperimentManagerPlugin/Doxygen/class_image_processor-members.html
	References/Script/ExperimentManagerPlugin/Doxygen/class_image_processor.html
	References/Script/ExperimentManagerPlugin/Doxygen/class_prt_format_manager-members.html
	References/Script/ExperimentManagerPlugin/Doxygen/class_prt_format_manager.html
	References/Script/ExperimentManagerPlugin/Doxygen/class_random_generator-members.html
	References/Script/ExperimentManagerPlugin/Doxygen/class_random_generator.html
	References/Script/ExperimentManagerPlugin/Doxygen/class_retino_map__glwidget-members.html
	References/Script/ExperimentManagerPlugin/Doxygen/class_retino_map__glwidget.html
	References/Script/ExperimentManagerPlugin/Doxygen/class_trigger_timer-members.html
	References/Script/ExperimentManagerPlugin/Doxygen/class_trigger_timer.html
	References/Script/ExperimentManagerPlugin/Doxygen/classes.html
	References/Script/ExperimentManagerPlugin/Doxygen/classqml_widget-members.html
	References/Script/ExperimentManagerPlugin/Doxygen/classqml_widget.html
	References/Script/ExperimentManagerPlugin/Doxygen/files.html
	References/Script/ExperimentManagerPlugin/Doxygen/functions.html
	References/Script/ExperimentManagerPlugin/Doxygen/functions_enum.html
	References/Script/ExperimentManagerPlugin/Doxygen/functions_eval.html
	References/Script/ExperimentManagerPlugin/Doxygen/functions_func.html
	References/Script/ExperimentManagerPlugin/Doxygen/functions_vars.html
	References/Script/ExperimentManagerPlugin/Doxygen/group___prt_format_manager_defines.html
	References/Script/ExperimentManagerPlugin/Doxygen/group___retino_eccentricity_param_defs.html
	References/Script/ExperimentManagerPlugin/Doxygen/group___retino_moving_bar_param_defs.html
	References/Script/ExperimentManagerPlugin/Doxygen/group___retino_polar_angle_param_defs.html
	References/Script/ExperimentManagerPlugin/Doxygen/group___retino_universal_param_defs.html
	References/Script/ExperimentManagerPlugin/Doxygen/hierarchy.html
	References/Script/ExperimentManagerPlugin/Doxygen/index.html
	References/Script/ExperimentManagerPlugin/Doxygen/modules.html
	References/Script/ExperimentManagerPlugin/Doxygen/namespace_experiment_manager_name_space.html
	References/Script/ExperimentManagerPlugin/Doxygen/namespace_prt_format_manager_name_space.html
	References/Script/ExperimentManagerPlugin/Doxygen/namespacemembers.html
	References/Script/ExperimentManagerPlugin/Doxygen/namespacemembers_enum.html
	References/Script/ExperimentManagerPlugin/Doxygen/namespacemembers_eval.html
	References/Script/ExperimentManagerPlugin/Doxygen/namespacemembers_type.html
	References/Script/ExperimentManagerPlugin/Doxygen/namespaces.html
	References/Script/ExperimentManagerPlugin/Doxygen/prtformatmanager_8h_source.html
	References/Script/ExperimentManagerPlugin/Doxygen/qml_widget_8h_source.html
	References/Script/ExperimentManagerPlugin/Doxygen/retinomap__glwidget_8h_source.html
	References/Script/ExperimentManagerPlugin/Doxygen/struct_experiment_manager_name_space_1_1strc_parsed_parameter_definition-members.html
	References/Script/ExperimentManagerPlugin/Doxygen/struct_experiment_manager_name_space_1_1strc_parsed_parameter_definition.html
	References/Script/ExperimentManagerPlugin/Doxygen/struct_experiment_manager_name_space_1_1strc_script_experiment_structure-members.html
	References/Script/ExperimentManagerPlugin/Doxygen/struct_experiment_manager_name_space_1_1strc_script_experiment_structure.html
	References/Script/KeyBoardDevicePlugin/Doxygen/_global_8h_source.html
	References/Script/KeyBoardDevicePlugin/Doxygen/_key_board_capture_8h_source.html
	References/Script/KeyBoardDevicePlugin/Doxygen/annotated.html
	References/Script/KeyBoardDevicePlugin/Doxygen/class_key_board_capture-members.html
	References/Script/KeyBoardDevicePlugin/Doxygen/class_key_board_capture.html
	References/Script/KeyBoardDevicePlugin/Doxygen/classes.html
	References/Script/KeyBoardDevicePlugin/Doxygen/files.html
	References/Script/KeyBoardDevicePlugin/Doxygen/functions.html
	References/Script/KeyBoardDevicePlugin/Doxygen/functions_func.html
	References/Script/KeyBoardDevicePlugin/Doxygen/index.html
	References/Script/KeyBoardDevicePlugin/Doxygen/namespace_key_board_name_space.html
	References/Script/KeyBoardDevicePlugin/Doxygen/namespacemembers.html
	References/Script/KeyBoardDevicePlugin/Doxygen/namespacemembers_enum.html
	References/Script/KeyBoardDevicePlugin/Doxygen/namespacemembers_eval.html
	References/Script/KeyBoardDevicePlugin/Doxygen/namespaces.html
	References/Script/ParallelPortDevicePlugin/Doxygen/_global_8h_source.html
	References/Script/ParallelPortDevicePlugin/Doxygen/_parallel_port_8h_source.html
	References/Script/ParallelPortDevicePlugin/Doxygen/annotated.html
	References/Script/ParallelPortDevicePlugin/Doxygen/class_parallel_port-members.html
	References/Script/ParallelPortDevicePlugin/Doxygen/class_parallel_port.html
	References/Script/ParallelPortDevicePlugin/Doxygen/classes.html
	References/Script/ParallelPortDevicePlugin/Doxygen/files.html
	References/Script/ParallelPortDevicePlugin/Doxygen/functions.html
	References/Script/ParallelPortDevicePlugin/Doxygen/functions_func.html
	References/Script/ParallelPortDevicePlugin/Doxygen/index.html
	References/Script/ParallelPortDevicePlugin/Doxygen/namespace_parallel_port_name_space.html
	References/Script/ParallelPortDevicePlugin/Doxygen/namespacemembers.html
	References/Script/ParallelPortDevicePlugin/Doxygen/namespacemembers_enum.html
	References/Script/ParallelPortDevicePlugin/Doxygen/namespacemembers_eval.html
	References/Script/ParallelPortDevicePlugin/Doxygen/namespaces.html
	References/Script/SerialPortDevicePlugin/Doxygen/_global_8h_source.html
	References/Script/SerialPortDevicePlugin/Doxygen/_serial_port_device_8h_source.html
	References/Script/SerialPortDevicePlugin/Doxygen/annotated.html
	References/Script/SerialPortDevicePlugin/Doxygen/class_serial_port_device-members.html
	References/Script/SerialPortDevicePlugin/Doxygen/class_serial_port_device.html
	References/Script/SerialPortDevicePlugin/Doxygen/classes.html
	References/Script/SerialPortDevicePlugin/Doxygen/files.html
	References/Script/SerialPortDevicePlugin/Doxygen/functions.html
	References/Script/SerialPortDevicePlugin/Doxygen/functions_enum.html
	References/Script/SerialPortDevicePlugin/Doxygen/functions_eval.html
	References/Script/SerialPortDevicePlugin/Doxygen/functions_func.html
	References/Script/SerialPortDevicePlugin/Doxygen/index.html
	References/Script/SerialPortDevicePlugin/Doxygen/namespace_serial_port_device_name_space.html
	References/Script/SerialPortDevicePlugin/Doxygen/namespaces.html
	References/Script/USBHIDDevicePlugin/Doxygen/_global_8h_source.html
	References/Script/USBHIDDevicePlugin/Doxygen/_u_s_b_h_i_d_device_8h_source.html
	References/Script/USBHIDDevicePlugin/Doxygen/annotated.html
	References/Script/USBHIDDevicePlugin/Doxygen/class_u_s_b_h_i_d_device-members.html
	References/Script/USBHIDDevicePlugin/Doxygen/class_u_s_b_h_i_d_device.html
	References/Script/USBHIDDevicePlugin/Doxygen/classes.html
	References/Script/USBHIDDevicePlugin/Doxygen/files.html
	References/Script/USBHIDDevicePlugin/Doxygen/functions.html
	References/Script/USBHIDDevicePlugin/Doxygen/functions_func.html
	References/Script/USBHIDDevicePlugin/Doxygen/index.html
	References/Script/USBHIDDevicePlugin/Doxygen/namespace_u_s_b_h_i_d_device_name_space.html
	References/Script/USBHIDDevicePlugin/Doxygen/namespacemembers.html
	References/Script/USBHIDDevicePlugin/Doxygen/namespacemembers_enum.html
	References/Script/USBHIDDevicePlugin/Doxygen/namespacemembers_eval.html
	References/Script/USBHIDDevicePlugin/Doxygen/namespaces.html
	js/StimulGL.js