labofsahil/github-event-dataset-2012 huggingface dataset:
Add a new traceMarker# primop for use in profiling output

In time-based profiling visualisations (e.g. heap profiles and ThreadScope)
it would be useful to be able to mark particular points in the execution and
have those points in time marked in the visualisation.

The traceMarker# primop currently emits an event into the eventlog. In
principle it could be extended to do something in the heap profiling too.
Use -O0 -g C flags when compiling a debug way
Make -ddump-cmmz-cfg turn on the right flag

It was turning on Opt_D_dump_cmmz_cbe rather than Opt_D_dump_cmmz_cfg
Merge branch 'master' of darcs.haskell.org:/srv/darcs//ghc
Remove unused dumpIfSet_dyn_or
Build system fix for building a profiling GHC
Rename DynFlag to GeneralFlag

This avoids confusion due to [DynFlag] and DynFlags being completely
different types.
Rename setDynFlag, unSetDynFlag following the DynFlag->GeneralFlag rename
Whitespace only in simplStg/SimplStg.lhs
Remove a copy of foldM, and use the standard function instead
Some alpha renaming

Mostly d -> g (matching DynFlag -> GeneralFlag).
Also renamed if* to when*, matching the Haskell if/when names
Fix build on OS X (fix from Duncan Coutts)
Remove unused -ddump flags
Put header and timestamp in dump files
Refactor the way dump flags are handled

We were being inconsistent about how we tested whether dump flags
were enabled; in particular, sometimes we also checked the verbosity,
and sometimes we didn't.

This lead to oddities such as "ghc -v4" printing an "Asm code" section
which didn't contain any code, and "-v4" enabled some parts of
"-ddump-deriv" but not others.

Now all the tests use dopt, which also takes the verbosity into account
as appropriate.
Turn DYNAMIC_BY_DEFAULT off in mk/build.mk.sample

It sets GhcLibWays=v, which doesn't work with DYNAMIC_BY_DEFAULT on
as the dynamic libs aren't built.
Follow 'flags' -> 'generalFlags' rename
profiling fixes
Remove the old codegen

Except for CgUtils.fixStgRegisters that is used in the NCG and LLVM
backends, and should probably be moved somewhere else.
Merge git://github.com/achimkrause/ghc into OverloadedLists
Fix ifdt and add a test for it
New TopGit branch: p/cassandra-1.1/4122/03_group_stream_out_ranges
update dependency of p/cassandra-1.1/4125/01_admin_tools
import patch
Merge commit 'refs/top-bases/p/cassandra-1.1/4125/01_admin_tools' into p/cassandra-1.1/4125/01_admin_tools
Merge commit 'refs/top-bases/p/cassandra-1.1/4127/01_migration_path' into p/cassandra-1.1/4127/01_migration_path
Add some core string specs with fixes
Fix undef from using old method_table internals

There are no method tables anymore, so undef'ing a method is now
as simple as deleting the function from the relevant prototype.
Fix Kernel#puts as arguments should never be null
matrices defined by functions section
info theory test passes
removing mutable state
semicolons
several matrix and stats operations added
The tabbar code does not directly depend on TabbedViewContainer anymore
Added a hanlder for PDF Files?
Function to divide polygon into Top, Bottom, Left and Right parts.
More dead code deletion.
evil tar
Removed static html on the main page.
Removed the static code from the main controller.
Merge branch 'master' of github.com:aeggum12/spudsy
Fixed major PATH bug in .zshrc
Added vanilla vim bundle
Added the newly added gateways.
fixed bug
important fix for mysql-python bug
Updates to User Object and to helper methods and elements for users.
added new images
added base/plugins js
updated base.css
removed login.css, unused images
modified templates
replaced ai logo, modified login.js
css fix for admin fileupload button appearance
css overwrite for admin date input field calendar widget issue
元芳失忆后。。。
狄仁杰：“元芳！我是狄仁杰啊！！不记得我了么？”
元芳拔剑指向狄仁杰.恶狠狠地说：
“放屁！我只听说过情人节，哪来的敌人节？！”
地面驱动设备是螺杆泵采油系统的主要地面设备
是把动力传递给井下转子，使转子运转，实现抽吸原油的机械装置。
= =想到个SP曹操求鉴定
SP曹操 3血 魏国

笑刃:当你成为非延时锦囊目标时,不可被无懈可击响应,你所使用的锦囊不可被无懈可击响应
奸雄(改):每当你受到一次伤害后，你可以获得对你造成伤害的牌。当非任意牌对你造成伤害的情况,你获得伤害来源一张牌.
尊贤:主公技,你可以在出牌阶段交给任意群雄角色2张牌,非群雄与魏角色3张牌令其势力变更为魏.每阶段限1次.在你的出牌阶段你可以令其他魏势力角色打出2张基本牌视为你使用了任意一张基本牌.每阶段限1次
You hung up your cape and your cowl
but you didn't move on.
You never went to find a life.
To find someone.......
你把斗篷面罩束之高阁，心中却没有真正放下。
你从没去寻找真正的生活，去寻找那些你爱的……
——《蝙蝠侠前传3·黑暗骑士崛起》
城府改造计划（前篇）
城府改造计划（后篇）新增CardAsk和CardUseAsk事件
pass init.
core
server & client
ui,dialog and other
基本能用了
喽啰设定完成
V3.2.8 消费者权益保护版
消协版完成
美化武将一览和技能学习框
水浒杀0315消费者权益保护版
ts更新
专用将搬家（未遂）
不扔型pattern
修正绝命
自定义模式增加直接输技能功能
修复宋公明遇九天玄女的bug
完善舞棒，和蹴鞠对0点伤害不发动的AI
"补全"神武将配音
童威、徐宁、邹渊配音
更新文档
Fix generics syntax in README
adding rmvenv
Screen backspace fix?
Adding alternate tabbing
Fixing markdown stuff
Adding git hide and unhide
Adding egg-info
Adding RST-Tables
first commit
API Doc
Merge branch 'master' of github.com:ajindal/theTrio
add bubtrail
test commit
Merge branch 'master' of github.com:akd99/CAHonline
print result output always converted to lowercase
correct some badly converted tests
cleanup of TwitterLight and defaulting not to do analytics
separated nexus.js and nexus.test.framework.js
Added routing support for PanelsByLocation
update of Selenium tests
Button has changed for Submit button
Changes in default.aspx and selenium tests
changes in the link names
Changes in js and selenium tests
remove suo
delete SUO
small change to gitignore
Merge branch 'master' of github.com:alansoto/orange into Refactoring
Moved some classes
Allow edition of user nested attributes

Accept adress, phones, and accounts nested attributes on user and add
to attr_accesible.
push rounding numbers
Rename to oauthd
some refactoring of forked adapter code
即選即上_課表
Change error page colours
Track 'get started' links for transaction.

- Remove target from exit link URL
- Add tracking for get started button.
sidebar error
Updated version to 1.2.5-R5.0 in pom.xml for RB.
Updated version to 1.2.5-R5.1-SNAPSHOT for development towards next release.
Update Bukkit for 1.3.1 changes
Add LargeBiomes WorldType.
took out all div styles
Fix typo in preferences.js
Merge pull request #1214 from fabricedesre/webapps

Fix typo in preferences.js
added (untested) support for etrade dividend task
Renamed README to README.markdown for rendering.
Raise error for missing hosts in inventory scripts as well
Merge pull request #1385 from dhozac/raise-error-for-scripts-too

Raise error for missing hosts in inventory scripts as well
changelog update
Make async wrapper kill the process it supervises.

It wasn't killing the job at all before.
Indentation was 3 spaces.
Introduce Async API in Runner.
Modify /usr/bin/ansible and playbooks to use the new async API.
Async: print one poll message per polling cycle.

Instead of one per host per polling cycle.
Port the copy module over to the new "common module" logic.
use metal and fix rendering
nicer looking UI I guess
clean it up one more time~
implement VotingProcess Class
Merge branch 'master' of https://github.com/ant2/eXceedVote

Conflicts:
	src/com/github/ant2/exceedvote/model/process/VotingProcess.java
deployed new syncped
Unify test naming
apply fix for: https://issues.apache.org/jira/browse/AMQ-4068

Updated patch for new layout and fixed size returned to only include the dynamic journal size and not the total disk usage since that accounts for the full log file size and not just the used portion. 

git-svn-id: https://svn.apache.org/repos/asf/activemq/trunk@1421557 13f79535-47bb-0310-9956-ffa450edef68
configurable cache path
add gis.
first try to migrate to lb 3
fixed syslinux entries (?)
Added 'define-policy macros
Merge branch 'master' of github.com:archimag/restas
Use &body insted &rest in 'define-module
Load app in order to run migrations
Merge branch 'master' into remove_sharing
Auth data check in Info-reply.
Added Redis Connection Poll to chat-redis example, modified diesel.pool in order to prevent need to be within an event loop when initializing with pool_max
Fix extra casts on field access, dynamic_cast comma order for super method invocations
Fix names with repeated Array
Work around named local bug, fix string null append
Write final/const fields separately
Public super
notes - Compilers - notes
Adding FileSystem support.
Merge branch 'master' of github.com:athanase/Vitals

Conflicts:
	codeblocks/Vitals.layout
Auto generated at Sun Dec 16 18:36:19 HKT 2012
Footer Update…   -Jelmer van Baarsen
All sorts of changes...
Merge branch 'develop' of github.com:auggernaut/Pipe into develop

Conflicts:
	app.js
Adding radii in red dashes
Use vdc_data variable instead of assuming '$VDC_ROOT/tmp' should be used.
Added 'vdc_data' variable to 'config.env'.
Merge pull request #74 from axsh/fix-demodata

Fix demodata
added load balancer image.
added load balancer node image
changed ostemplate base name
rpmbuild/ops/setup-ci-env.sh: enable to define repo_uri to switch the other repository uri.
Added embed youtube form rid param

Signed-off-by: Eyal Yaniv <eyal@simplified-networks.com>
small indent and fixes
Merge branch 'master' of https://github.com/gafner/tuki into tuki-hack

Conflicts:
	js/tuki.js

Signed-off-by: Eyal Yaniv <eyal@simplified-networks.com>
added embed youtube by param again

Signed-off-by: Eyal Yaniv <eyal@simplified-networks.com>
Merge remote-tracking branch 'eyal-tuki/tuki-hack'
add jquery and utils
Merge remote-tracking branch 'ayal-tuki/master'

Conflicts:
	index.html
Added video div

Signed-off-by: Eyal Yaniv <eyal@simplified-networks.com>
extension folder for tuki
extension deployed air version 3.0
Merge remote-tracking branch 'eyal-tuki/tuki-hack'
db structure, force connect, create room per invited fbids
using name and fbid from fbapi

better setting of room in db
online users, room data (users) and many more..
fixed board privacy bug
Merge branch 'master' of github.com:ayau/trackcraze
Adapted battery icon colours.

* Not that 'mean' anymore.
Remove unneeded tidy meta tag
IT lab6 little fix
flushed out a number of pages, added some ajax, etc.
ファイル差分に
statically fixed visualmark highlight
Merge branch 'master' of github.com:b-ryan/dotfiles
moar border
AtEol *properly* checks for end-of-code... :-P
Refactoring convert; implemented equals
Ignore input output files
Add minimum scalar product solution
k-mean clustering
CPU loading code ready
put in the latest GeoExplorer script
Remove riak_core_handoff_manager:set_recv_data/2 comment per review
增加规范。

* 除非真正的表格，禁止使用 table。
* 避免在 html 标签中书写 style 属性或者和样式相关的代码。
Own exception class example
fixed a bug with the prelude-flyspell check
added a basic list of useful keybindings available in Prelude
eliminated dependency on commandline awk
rename RoleFunctionPermission
Update app/models/datatype.rb

four issue #55
Refactored goto and targets
Added support for more asynchronous servers
Resolved merges
Avoid running chardet in decode_string if not needed
Readme
Update dist
Add URL to readme
Adding test for fetch
Adding test file
Merge branch 'master' of git://github.com/Jorge-64/AcmGame into test
Config has been updated with new credentials
adds .gemspec and Gemfile
needed to change required eventmachine version to 1.0.0.beta.4 because
em-http-request 1.0.1 also depends on this version
made scrolloff 0 again -- it was annoying
Added 'virtual_accounts' to all nodes.
Added configuration file for 'lightdm' which load our backup script at GUI-login.
lodash: Add a combined minified mode. [jddalton]
lodash: Fix JSDoc entries, rename private constructor `Lodash` to `LoDash`, and optimize wrapper methods. [jddalton]
drawing the edges and all the nodes. As you mouse over each node, the are drawn larger and a different color.
roman_to_decimal implemented, decimal_to_roman++
KataBowling: functions added to parse string input
uart: Kill some blocking recieves
added css box-shadows for cooler UI
added radio buttons check box
Push JSON update into DOM.

Now able to update the DOM based on changes to the underlying JSON
document used to generate the DOM from a Stencil.

No API for this yet. Simply wanted to see the mechanics of the push.

The generator now returns an object. As there is no API, the object just
contains the raw state and a method named `update`. All this object
really needs to expose is a destructor, to dispose of the listening
snippets when it is unloaded or replaced.

There is probably some way to have garbage collection. Each call to the
generator builds one document, a live document. If a snippet is
refreshed, but it's node that is no longer a member of the document, no
action is taken and the snippet is removed from the set of snippets.

Some notes to self dumped into `README.md`.

Closes #37.
Merge branch `json-select` into `master`.
PIN_ALIAS code for a-z vars, from karl
new post dock and mission control
README checkin

Change-Id: I972b6cd72be0cf20a5107312267940e2fa071cbf
moved like buttons to bottom of text
Added md5 to password and ready sending login POST request to server
Move Rake::DSL into railtie
JGrouper::Stem.root_stem => .root + JGrouper::Subject.root_subject => .root
Laying out the home page
revs cookies
Merge branch 'master' of github.com:/bloomtec/ez-cms
revisiones uploadify
Site updated at 2012-04-26 04:32:49 UTC
Updating npm registry
Fix test-cluster-message so it passes on Windows

The test was relying on a particular order of events that cannot be
guaranteed.

Also fixes some typos.
test-eio-limit: bump the number of allowed background tasks to 200

This makes the test pass on Windows.
uv: upgrade to 61a6e06e
child_process: add .stdin stream to forks

Remove test as it doesn't make any sense after the latest stdio API
changes.
uv: Upgrade to 382f2a26
Fix #3465 Add ./configure --no-ifaddrs flag

For Old Solaris.
node: remove unused flags and files

Drop vestigial `process.installPrefix`, `node --vars`, NODE_CFLAGS and
NODE_PREFIX.

Also removed unused node_config.h.in (replaced with config.gypi a while back).
v8: print correct line number for Error thrown inside eval.

R=rossberg@chromium.org
BUG=v8:1914
TEST=eval-stack-trace.js

Review URL: https://chromiumcodereview.appspot.com/10565002

This is a backport of upstream commit r11851.
efi-boot-stub: Give startup.sh files more descriptive names

git-svn-id: https://nixos.org/repos/nix/nixos/trunk@33321 70bd8c7a-acb8-0310-9f0d-9cc1c95dcdbb
Making the virtualbox-guest module be evaluated only in i686 and x86_64.
On mips, an assertion in the nixpkgs virtualbox was failing.



git-svn-id: https://nixos.org/repos/nix/nixos/trunk@34464 70bd8c7a-acb8-0310-9f0d-9cc1c95dcdbb
Revise ArrayModifier interface; add implementation
Revise sig file
Add scope link
Implement the analysis operation

Refactored code and tests, added license files for dependencies and improved the core API.
Update docs/routing.rst
Merge pull request #327 from idkfa/patch-1

Update docs/routing.rst
fix: Accessing the uninitialized request/response objects now yields a useful error message.
Improved autocomplete to utilize focus and select events for populating search form and selection for submitting the search form.
Merge pull request #102 from cjsaylor/master

Improved autocomplete to utilize focus and select events
格付けを追加した。
Actualizaciones de BD
Merge branch 'master' of https://github.com/brass3a4/idheas
Merge branch 'master' of https://github.com/brass3a4/idheas
Actualizaciones
Actualizar
Merge branch 'master' of https://github.com/brass3a4/idheas
Cargar archivo
Merge branch 'master' of https://github.com/brass3a4/idheas
launchd support
Fill menus to full sidebar width.
Menus in the sidebar have different heading styles than regular
blocks. These changes reflect that in the Cornerstone theme.
Mention the NeuroDebian packages in the docs
[brian2] equations: Some more tests, should bring the test coverage close to 100%
[brian2] created cuba example and made namespaces work with threshold and reset (using Statements)
[brian2] Added NeuronGroup.runner, will probably be refactored later but it's a cool feature
added unregister by destruction
added README for the Error component
Finished initial version.
Changed version number.
[feature/only-op-can-view] Forgotten syntax error

There was a syntax error on mcp_forum.php but went by
unnoticed... I wonder when that happened...

PHPBB3-10623
Check risk or hex strings
Doc. info about I'm using personal configuration
le message d'information autorisation refusé s'affiche dans 'AsksellerPasswordActivity' au lieu de dans 'PaulineActivity', ce qui laisse la possibilité à l'utilisateur de re-rentrer son mot de passe directement
update channel
Dump graph in layout:
Write/load all graph for a given .str
clean pdb
Merge pull request #10 from niamiot/master

Layout improvements
typo fix for svn_up_parallel and two new things
svn_up_parallel, now with more recursion
Revert "Always use error layout when rendering error pages."

This reverts commit 3495422ac5bde8667becaa1e4afc12c9d139c69b.
ignore, or deleting, or oh hell I don't know anymore
gitignore… FOR THE LAST TIME
New changes from bayes project
sanifying the spec helper
Add supoprt for readers and writers.

New functions:

    wkbreader_create/0,
    wkbreader_read/2,
    wkbreader_readhex/2,
    wkbwriter_create/0,
    wkbwriter_write/2,
    wkbwriter_writehex/2,
    wktreader_create/0,
    wktreader_read/2,
    wktwriter_create/0,
    wktwriter_write/2

	modified:   c_src/erlgeom.c
	modified:   src/erlgeom.erl
Update sample set to include readers and writers.
Merge pull request #152 from carterpage/selector_builder

Selector builder
Merge branch 'master' of github.com:skyscreamer/yoga into selector_builder
updated readme with proper links in github usernames and changed a few things more
add AOJ0567
Added port 587 for sending email.
FreeImage 3.15.1
quake like mode uses the docking position
bug fix : docking position was lost with snap edge disactivated
Refactor parsing command line args

The args, important for the application, are parsed in the app, but the
args, important for the main window, are now parsed by the window itself.
Add support to use an existing instance when opening tabs

Only one instance can be marked for reuse.

Obviously, the app-wide command line args are ignored if the instance
is reused. Currently, they're custom config file, window title. All
others - including tabs, dirs, commands, delay between opening tabs -
will be passed to the running instance.

Attempt is made to bring the reusable Console into foreground, but it may
fail [for no apparent reason].

If a reusable instance is running, launching with -reuse will just activate
that instance.
Add support for Jump List

The jump list will be updated only on startup of a Console.
If a config is specified on a command line, the list will NOT be updated.
jumplist and tabs menu use same icons
Jumplist is recreated at each settings modification
jumplist is an option in console settings
smart pointer use in jumplist code (nested if : ugly)
settings directory used as working directory in jumplist tasks
resolve full name of icons
use the settings file name as category name
bug fix : docking position was lost with snap edge disactivated
bug fix : docking position was lost when console was minimized
click or bouble click on systray activates the console
quake effect is disactivated if the console is not docked
minimize button no longer removed if tray icon is used
update documentation for ConsoleZ
Merge branch 'win7'
Visual Studio 2010
Modified the method of setting default values in cemerick.friend/authenticate*
Updated Ring URI
refer to `identity` properly
Bump version to v0.2

Signed-off-by: Kevin Cernekee <cernekee@gmail.com>
Manejo del estado posterior a la edicion
client: Don't create tests/download directory unless needed

job.run_test() may take a url parameter, that usually
is the test name, however it can take an actual url
with a .tar.bz2 test. However, if we're not going to
use this feature, this directory is not needed, and if
needed, the directory will be created by the install
from url code.

Therefore, remove this to better comply with packaging
requirements (people might feel uneasy about autotest
creating directories on python site-packages dir in a
compulsory way). Update the job unittest accordingly.

Signed-off-by: Lucas Meneghel Rodrigues <lmr@redhat.com>
client job: Make packages dir configurable

This patch adds pkg_dir option in COMMON section in
global_config.ini that, when set, would be assign to
pkgdir attribute of the base_job class.

Signed-off-by: Lucas Meneghel Rodrigues <lmr@redhat.com>
client job: Make state file directory configurable

On a system wide install, it is undesirable that the
control file state files are located in the same directory
as the control files, since that location will be read
only for non root users, for example:

/usr/lib/python2.7/site-packages/autotest/client/tests/sleeptest/control.state

So make this directory configurable, hence allowing autotest
to write job state files there on a system wide install
yet leaving non root users able to run jobs.

Signed-off-by: Lucas Meneghel Rodrigues <lmr@redhat.com>
Fixing a couple of wrong unittest imports

Signed-off-by: Lucas Meneghel Rodrigues <lmr@redhat.com>
Fix the wrong import usage in the unittest code

Signed-off-by: Lucas Meneghel Rodrigues <lmr@redhat.com>
contrib/install-autotest-server.sh: Fix typo and help string

Signed-off-by: Lucas Meneghel Rodrigues <lmr@redhat.com>
client.tests.selftest: Use keyword arguments on test methods

As the use of positional arguments in job.run_test is not
supported anymore.

Signed-off-by: Lucas Meneghel Rodrigues <lmr@redhat.com>
client.shared.base_barrier: Remove useless error logging

As it was going to print the string representation of
the error module, not very useful for anyone.

Signed-off-by: Lucas Meneghel Rodrigues <lmr@redhat.com>
client.self-test: Remove old, bitrot functional test suite

The client functional test suite is long bitrot, due to
a number of changes made in autotest output. I did try
to try to filter outputs to adjust things, but turns out
it's too quirky and it doesn't work always. Let's remove
this and continue to focus on unittest development.

Signed-off-by: Lucas Meneghel Rodrigues <lmr@redhat.com>
server.self-test: Remove old, bitrot test suite

All the unittests in here are better implemented
in the base autoserv directory, and others are very
outdated. So let's get rid of it and continue to
focus on unittests.

Signed-off-by: Lucas Meneghel Rodrigues <lmr@redhat.com>
contrib/install-autotest-server.sh: Fix locale and help msg

1) Set en.US locale
2) Fix slightly misleading help message
3) Set the autotest user $HOME to be /usr/local/autotest

Signed-off-by: Matěj Cepl <mcepl@redhat.com>
virt: Add ubuntu 12.04 to guest os list

Signed-off-by: Qingtang Zhou <qzhou@redhat.com>
changed hgrc username
More on intro
xmlrcp
Tweak the windows readme
serielize to json
Added FromJsonCordDematerializer
jsonrematerializationarrays
basic json de/-serializing
added devise stuff
user model and links to registration and signin, closes #5 closes #6
Changed data hierarchy, now without space. Added labels to edges.
Changed data hierarchy, now without space. Added labels to edges.
Elimina Componente
botname command does speech also
initial merge from uncontrolled changes
added botdj code to autostep for one person
mods to commands
mods to greeting handler
began work for changing descriptions and making things generic
pulled in some extra files
Merge branch 'upstream-merge' into test

Conflicts:
	sparkle.js
renamed sparkle.js to bot.js
Handle empty results (using 'empty' in templates)
Item7017: Support topic include in integration testcases topics

git-svn-id: http://develop.twiki.org/svn/twiki/trunk@23811 a00a5322-12db-0310-a70b-8735589c885e
Item7017: Support topic include in integration testcases topics - updating docs

git-svn-id: http://develop.twiki.org/svn/twiki/trunk@23812 a00a5322-12db-0310-a70b-8735589c885e
Item7017: Support topic include in integration testcases topics - document in TestCases.WebHome

git-svn-id: http://develop.twiki.org/svn/twiki/trunk@23815 a00a5322-12db-0310-a70b-8735589c885e
Item7018: Add test cases to SpreadSheetPlugin

git-svn-id: http://develop.twiki.org/svn/twiki/trunk@23817 a00a5322-12db-0310-a70b-8735589c885e
Item7018: Add test cases to SpreadSheetPlugin - small follow-up fix

git-svn-id: http://develop.twiki.org/svn/twiki/trunk@23819 a00a5322-12db-0310-a70b-8735589c885e
Add some more methods to Mem object to make using it from the console _awesome_
Have scrunch.py tell you when you need to run assembly:assembly
Combine pagerduty incidents last week with pagerduty schedule into a
single pagerduty plugin (#3).
formularios y listings con tb
Since the publication of the paper in Genome Biology
(http://genomebiology.com/2012/13/1/R5), we have continued to develop
Uberon, with the help of multiple people in the anatomy ontology
community.

The current version of the ontology contains

 * N classes
 * M logical definitions
 * Y logical axioms

This release of Uberon includes up-to-date relationships to multiple
other ontologies, the use of a number of new relationship types,
primarily for representing development and topological connections.

Some highlights are included below

== Ontology Synchronization ==

Taxonomic equivalence axioms are up to date with respect to the latest
releaed versions of the following ontologies:

* AAO
* FBbt
* FMA
* HAO
* MA
* MFO
* SPD
* TGMA
* TADS
* TAO
* WBbt
* XAO
* ZFA

Direct equivalence axioms:

* CARO ("v1")
* BILA
* VSAO (current release plus unreleased version)

Equivalence axioms for NIF_GrossAnatomy are lagging behind

Subclass axioms are up to date for:

* EMAPA
* EHDAA
* EHDAA2
* OGES
* ncithesaurus
* VHOG

Note that with this version fo Uberon, the semantics of the VHOG
mappings have changed, such that the VHOG class becomes the parent
class. For example:

  * VHOG:lung-swim bladder
    * Uberon:lung
      * MA:lung
      * FMA:lung
    * Uberon:swim bladder
      * ZFA:swim bladder

We are working with the VHOG and VSAO developers to closely coordinate
resources.

In addition to the above, there are semantics-free cross-references to
the anatomy subset of SNOMED-CT

== Developmental Relationships ==

* Introduction of a new has_developmental_contribution_from
  (RO:0002254) relationship type

* Addition of new developmental relationships connecting various
  structures to the neural crest. This is the start of a project to
  improve representation of NC across multiple ontologies, based on a
  Phenotype RCN meeting hosted as NESCENT. Details here:

  http://wiki.phenotypercn.org/wg/phenotypercn/index.php?title=Neural_Crest_Workshop

* Classification of endochondral bones is performed automatically
  based on develeopmental relationships

== Organism Subdivisions and the Muscoloskeletal System ==

* Skeleton subdivisions have been updated and should be consistent
  with this working document:

 https://docs.google.com/document/d/16JZOuH9sh_a8uIXA4cqg0Q1H6MV5yCj3-rhuKsZoV_U/edit

* Many parts of the skeletal system have connected_to relationships as
  proposed in the following working document:

 https://docs.google.com/document/d/1cPWBqrl_Qy7XHEWFqtR_PgQX61yRkgGuLaiDpnEXxkE/edit

 These relations do not have RO IDs and may change in the future -
 comments welcome.

* Many muscles now have logical definitions or relationships specified
  using attachment relations

== Sponges ==

* Sponge terms have been ceded to the new Porifera ontology, PORO
  http://code.google.com/p/porifera-ontology/

== Iterative Homology (experimental) ==

== New Ontology Subsets ==

TO WRITE
Fixes to db.cpp

Add missing lines to fix backup wallet function, props ali1234

Flush on Log size instead of transaction count
Reduce sync frequency for blkindex.dat

Since auto-remove-db-logs was enabled, each time a CTxDB was closed
outside of the initial download window, it causes a checkpoint + log
cleanup. This is overkill, so reduce the sync frequency to once per
minute at most.
Merge pull request #41 from fanquake/master

Fixes to db.cpp
Modified localizable strings.
Fixed invalid population of QR_LOG_DIR
close tags in html examples
Set coffee-script dep to 3.x
Add new coffee-style fn signature to model.query. Fix 2 query hashing issues.

model.query(namespace), is now model.query(namespace, opts), where opts
optionally encapsulates what would be further chainable query method calls.
Query hashing fixes for number-vs-string condition values and queries with
byKey.
Some fixes for whotofollow page
meego ex: revise input field visuals
mobile ex: fix "#channel has N users" upon join regression
changed contejo path in core path
404 and 500 updated
error.gsp and index.gsp removed
Merge branch 's12' of github.com:coolxyz/NewSwat into s12
rudimentary ajaxlib form support
catch the permission error in IE8 on page unload
ajaxify form that uses tinymce
Merge remote-tracking branch 'upstream/master'
merge
setPos and getPos Script instructions. Cell-crossing is not tested yet.
getStartingPos
some correction
first try of the Position script instruction. Still missing: check if overlapp with an object.
PositionCell
Merge branch 'master' of https://github.com/zinnschlag/openmw.git into object_movement_creation

Conflicts:
	apps/openmw/mwscript/transformationextensions.cpp
remove some redundant code
still fix assertion fail
should fix 'north direction' bug

not even compiled
2nd try: position/ PositionCell
Merge branch 'cross_cell-borders' of https://github.com/greye/openmw.git into object_movement_creation
Merge branch 'master' of https://github.com/zinnschlag/openmw.git into object_movement_creation
Merge branch 'master' of https://github.com/zinnschlag/openmw.git into object_movement_creation

Conflicts:
	apps/openmw/mwrender/renderingmanager.cpp
some correction
Merge branch 'move_rotate_fix' of https://github.com/greye/openmw.git into object_movement_creation
little fix (thanks greye!)
allow exterior cell for positioncell. Crash!
fixed a crash
Make FieldSet indexing case-insensitive
[ostream.rvalue] and [rand.eng.mers]: fix "<<" in inline code showing up as French double quotes instead of "<<". Thanks to Peter Sommerlad!
[tuple.rel] fix sizeof...(Types) -> sizeof(TTypes) in two places. Thanks to Andrew Koenig!
[locale.codecvt] Fix "The stateT object" -> "Objects of type stateT" (stateT is a type, not an object). Thanks to Beman Dawes!
[locale.cons] Move description of the copy assignment operator for locale to the right place. Thanks to Bo Persson and Daniel Kruegler!
[tuple] and [tuple.rel] Replace all uses of "iff", either with proper grammar in tuple.rel or with "only if" in comments pertaining to members that only exist under some conditions. There are no other uses of "iff" in the standard.

Thanks to Jonathan Wakely for the [tuple.rel] part!
added guard, jasmine, livereload, all setup
update
prueba
Merge branch 'master' of github.com:cramirezmera/CV
add project list json
fixbg
Tweak language of number-of-blocks matcher.
Index species in each block, and enable filtering on such.

Closes #24.
Pass the harmonic proportions to the bell so that we can more easily demonstrate phantom fundamentals.
Messed around with comments and sections.
More stale code removal
Added code to calculate impulse response and resulting steady state sinusoid; began writing code for 285 optimal simulations
Debugged beam splitting which now works beautifully.  Also committed interactive debugger I made for beam splitting
got the playlist workong with MPC. Refactored the Track class out of Playlist.scala = better for the DB. Added a rudimetry MPC setup, this is controlled through the Application.conf. Fixed the playlist http endpoint to repoert from the Application playlist not mpc.
Including non-Java resources from source folder.

This is necessary because the project doesn't follow the Maven folder structure.
Removing build artefacts because they should not appear in source folders.
All new code to start on Unicode 6.2
Removed acidentally added files
Vim: Update plugins
Zsh: Make backup-itunes a function
Ack: Ignore generated Jekyll site directory
Vim: Tab Wrapper: Use Ctrl-N for completion instead of Ctrl-P
Tmux: Add more useful config
removed rubbish. pulling in new ui code from recent projs
Added Type Hinting support.
See: http://php.net/manual/en/language.oop5.typehinting.php
Fix issue where no assignee could be selected
Implement composing reports
Fix text output
Fixed false negative: memset(foo, 0, sizeof(&foo)); is as suspicious as memset(foo, 0, sizeof(foo));
Changed movement listener to document over canvas. Player offset is way wrong.
Merged changes for player movement
First pages
First pages
First pages
First pages
First pages
First pages
First pages
First pages
First pages
First pages
First pages
First pages
First pages
First pages
First pages
First pages
First pages
First pages
First pages
First pages
removed fork me on github; added release tag section to web.config and bottom corner of site
Updated to RC build of SignalR.
Fix to timeout code for very very slow servers
[Crypto] Hash was missing an include...
[Tests] RoundTest AddOne wouldn't work for CS ... fixed
[Anonymity] The "full" Client/Server DC-net modeled using the StateBasedRound
The real purpose of this project was to help create a StateBasedRound useful for building other Anonymity rounds.  As a side effect, it implements all of the features as described in the D3 paper as well as a bit vector at the beginning of the DC-net for opening slots.  That is, slots are not open until requested to be open.  Significantly reducing the DC-net message length when inactive as well as the CPU time in computing N signatures for empty slots.
[Anonymity] Removed Trusted as all the logic therein is now contained within CSBulkRound
Add nix.rm()
Add test task
Docs: Update context vars and improved fab script
Cleanup and docstring improvements
Version bump
add liked.haml
Bug fix in studentGrowthPlot_Styles from previous addition
Update of analzyeSGP to accomodate changes to data.table in 1.8.2
refactored the client to list via api2, made a display protocol and now uses native classes for browsing
show thumbnail
simple back button implementation
added a modal dialog for when you click on a non-folder
animates back
gets MP4 data
streams
added testflight SDK
added a simple icon
polish re:not having mp4 ready
removed logs
ceheck file info for mp4 files
attempts to play native MP4s
cleanup
better converting message
added a log of current transfers
added messages
html stripping messages from server
some polish
modal view polish
Detect patch files that are removed after they where applied to the database
Update README.rst
Merge pull request #3 from adw0rd/master

Update README and added correct import the "number"
more joeks
Merge pull request #2 from stephenmcd/patch-2

more joeks
update to hash readme.md
auto-installのバックアップをコミットしていたため削除。
Update installation instructions for Windows
Always remove what we add from sys.path.

fix gh-915. But this don't fix the theano-nose import problem when outside the Theano dir.
Merge pull request #982 from lamblin/doc_install_windows

Update installation instructions for Windows
add unit test
Add comment.
handle case where all outputs are int
use izip where appropriate
make theano.get_constant_value() to remove theano/gradient.py dependance on the sparse packages.
fix new crash due to import of scipy.sparse.
A c version for softmax almost identical to the bias softmax one
Merge pull request #988 from pascanur/c_softmax

A c version for softmax almost identical to the bias softmax one
Change nosetests -> theano-nose in documentation
Tell to use nosetests if theano-nose is not present
Merge pull request #990 from lamblin/better_nosetest_doc_rebased

Update doc to mention theano-nose instead of nosetests
Run Theano tests from inside Theano dir to prevent the theano-nose import problem.
Merge pull request #981 from nouiz/sparse_grad_import

Sparse grad import
Merge pull request #983 from nouiz/import

Import
Use absolute imports for clarity and safety
Typo fixes in doc
Typo fixes in comment
small doc update
testing infer_shape: Op RandomFunction
corrections to file layout
Allow to ignore error before the next 0.6 release.
Add file to map email of the same person together.
fix tests in FAST_COMPILE mode.
ENH: remove setuptools dependency
Updated doc as not setuptools is optional.
Merge pull request #772 from ilanschnell/master

ENH: make setuptools dependency optional
Remove a variable length array in our gpu code to make it work on windows.
Merge pull request #773 from nouiz/small

Small
fix new commit on variable length array fix for windows.
add comments.
update doc following code review.
Merge pull request #776 from nouiz/fix_new_commit

Fix new commit
fix crash with multinomial infer_shape as it was creating a cycle in the graph.
update tests doc why we don't test multinomal infer_shape.
fix docstring and execute all tests when calling the file.
testing infer_shape: op DimShuffle
testing infer_shape: op CAReduce
detailed product info
add products to menu (models)
jigoshop frontend scripts deleted from output and categories imgs became links
jigoshop single product breadcrumbs bug fixed
Utilized the limit=100 to reduce the average query from 4 to 1 HTTP request
My changes on sea
merged
Scale and camera
Ship start
Merge remote-tracking branch 'origin/master'

added fish repel action

Conflicts:
	Poisson/PoissonGame/PoissonGame/Entities/Fish.cs
	Poisson/PoissonGame/PoissonGame/PoissonGame.cs
	Poisson/PoissonSolution.suo
Ship start
Merge branch 'master' of github.com:desktop/Poisson
refactored attraction and repel behaviors
Merge branch 'master' of github.com:desktop/Poisson
_bRect->bRect
work update
still incorrect thursting
Sources committed to the source control service
product/categories bi-directional manytomany in admin
testing c9.io integration
c9.io setup confirmation
Small revision to a link.
sftp and another deps not avail on centos
Merge branch 'master' of github.com:dhubler/sipxecs
Instance table minor fixes.

  1. Don't display terminate action for paused instance.
     Fixes bug 979417.
  2. Don't poll on paused status in syspanel instances table.
     Fixes bug 979443.

Change-Id: I7d5b515eb8572c681898e46de355e777539f9944
bug #1001313, using dict(list) method to support python2.6

Change-Id: Idd372aa80f81f77a76fd53d26afbd61c4ffa78eb
Allow setup.py bdist to complete happily.

Fixes bug 1002551.

Change-Id: Ied984f020a6ae97375824fbc1297739db032ed0b
Merge "Instance table minor fixes."
Merge "Allow setup.py bdist to complete happily."
update quickstart doc to fix minor typos

fixes bug 1002661
* Changes the name of the directory used for django to be
openstack_dashboard instead of openstack-dashboard
* updates the location of manage.py

Change-Id: I8f04fd90f59d85f0339bd59c9e8d478bcb84f9e2
Adds initial workflow support to Horizon.

Implements blueprint workflows.

Adds a reusable workflow component to Horizon, and puts it
to use for the Launch Instance user interface. Contains
tests with roughly 90% coverage and full documentation.

Change-Id: I7325ef9db2ba2496d3fc1e2767cfeda50c71cbca
Merge "Adds initial workflow support to Horizon."
Adds pagination to Glance API and tables.

Fixes bug 981252.

Change-Id: Ib1fa6136947a23521dcdbf6d0d7ae783a6e0fae7
Translation fixes/updates.

Change-Id: I76b371e6c8119df81afe77c5f63f449a935c0c0a
Merge "Translation fixes/updates."
Imports optimization.
Merge branch 'master' of https://github.com/dimatwl/iClouDE

* 'master' of https://github.com/dimatwl/iClouDE:
  git wars: New Hope
  git wars part3
  some testing added
  Some updates
Merge branch 'master' of https://github.com/dimatwl/iClouDE

* 'master' of https://github.com/dimatwl/iClouDE:
  -
add: garbage collector
fix: agestat command
preserve subtype of Lines function
Fix desc within xref with no href: #1283
fix mail_html
Merge branch 'master' of git://github.com/diversen/coscms
remove git-publish, doesn't suit my workflow
.aliases: Add `dt`
.osx: Consistency tweaks
.aliases: Alias `sha1sum` if needed

Ref. #141.
.aliases: Add `dl`

Ref. #142.
.aliases: Make `update` update Ruby gems as well
.osx: Allow installing user scripts via GitHub or gists
.osx: Allow installing user scripts via Userscripts.org
.aliases: Make `update` run `brew cleanup`

Thanks to @patrickkettner for the suggestion on Twitter:
http://twitter.com/patrickkettner/statuses/254387082791903232
.osx: Add Mac App Store section

- Move existing command to new section
- Add debug menu command

Ref. #150.
README: Recommend sourcing the bootstrapper

Thanks to @svnpenn and @nvartolomei in https://github.com/mathiasbynens/dotfiles/commit/a77f4872f26d681a35cface9d6bcb4ad55fec752#commitcomment-2100022, and thanks to @janmoesen for the BASH_SOURCE pointer.
strip out noise
Fix to load alternatively named rom
precompile assets issue fix
Fix ctrl problem in windows.
fixed js
adding notes
no more permalinks
Tie force_ssl config option with secure cookie option setting.
started creating GameOver
Don't report nonexistent projects in `directDependencies`. The JDT has a very annoying habit of
caching dependent projects, and there's no way to clear that cache. I've seen the build fail because it
thought it depends on a nonexistent project. Neither closing, refreshing or restarting Eclipse helped,
so we filter it explicitly here.
Added a test for working with the Scala library coming from a file, and made the 
class path checker more lenient when the library comes from a project. In such a 
case the version is assumed to be compatible (there is no library.properties file 
inside the project, so we can't reliably guess the version).
Merge pull request #149 from dragos/issue/no-warning-when-library-is-project

Issue no warning when the Scala library is a project in the workspace
Updated install script for 2.9.x compatibility.
Implemented all named commands
Update holder.js

Added in the ability to only define one dimension. 

ex.
<img src="hldr/200" />

which is the same as: 
<img src="hldr/200x200" />
Removing current user from list built by print_user_option_list()

Since there is a [myself] value in the list, the current user should be
removed. This was done for ALL_PROJECTS with the fix for issue #10130,
but the single-project code still listed the current user.

By moving the code to remove the current user to the foreach loop that
builds the sort arrays, we ensure that it is removed in both cases.
Added pdf version of the schematic
use an AC addon for accessing the config

ac.instance and ac.command will be going away, so there needs to be
a new way to get the app-level configs
updated TODO
Merge branch 'search-perf' into perf-addon-config
updated example
Merge pull request #502 from drewfish/perf-addon-config

use an AC addon for accessing the config
Merge pull request #503 from drewfish/profiler

updated TODO
make use of JBoss AS7 modules for hornetq dependencies
Merge pull request #92 from mswiderski/hornetq-cleanup

make use of JBoss AS7 modules for hornetq dependencies
-added default constructor to DefaultUserInfo so it can be used in ht war configuration
JBPM-3661-HT Deadlines are not cancelled on task completion
-removed drools. as it will be added by ChainedProperties class
JBPM-3661-HT Deadlines are not cancelled on task completion - removed deadlines from db on completion and added async tests
Updates module handling; fixes op.bin()
Cleanup.
Version 0.1.1
Centered the board and added a white background
Added the ability to drag the board
add resolver for registry on file system
Create a backupdir to override the windows default and thereby remove the need to always w! when saving in Windows 7 and not running as administrator. Current backupdir can be vieweed with :verbose set backupdir?
Fixed merge error
Initial.
File Ext.
Changed the desc.
Initial.
Initial.
Test.
Categories can be retrieved/cached.
Test.
Vendor should not be in the repo.
Changed.
Cleanup.
Extend.
Cleanup.
Cleanup.
Topcategories can be retrieved/cached.
Desc.
Extend.
Extend.
Test.
Test.
Hopeful bug fix
Fix Facebook API change. Small refactoring.
Translate loading message to Vietnamese.
slightly less shitty interrupt handling
working around switch-pipeline
refining gstswitch
refined gstswitch, new switch2.sh test code
refactoring
Links created

The links are created to the wiki and the trello board.
Fix linkFix link
initialized client module
Modified rehandleCollisions behavior to avoid infinite rehandles.
Bouncy 2 player spawn point fixed+added checkpoints
oracle 数据导出脚本
Adding comments, resources and readme file to install Talend SAM server in Easysoa
Finish exercises from chapter 7
subida resto codigos
Reverted unrelated change from 3a7f6763
removed legacy response.py
updated ipsd2psd
Added more events for GUI
delete .Apply.hs.swp
ignore .swp
Merge pull request #7 from xuwei-k/delete-swp

delete .Apply.hs.swp
remove locations()
use signalAux
restore tb10 with warning; make xsHistoSpec more explicit
add xs files
explicit xsHistoSpec
cmssm 2011; chi
chi
use chi
accommodate updated selection constructor
unify cmssmXsHisto and smsXsHisto
simplify configuration
move nEventsIn to configuration
use patches directly
pass cutFunc; kill import
import style
cutFunc not needed
prune
Merge pull request #210 from elaird/binary

Binary
draw ratio options
Fixed bugs with retreating to declined region
Fixes broken references in Gemfile
Moving word counter to its own class for test speed and great justice
No need to require spec helper
Fixing misplaced requirement
Fixing the issue
Including hyperlink to support form.
Deleting empty line
Fixing a git error
Fixing issue 2911: subscriptions should be removed when their subscribables are. Added test.
Posting a chapter expires tag pages

We'll vanquish you yet, Maurice!
Oops, must ensure there is a work and it's posted too
Merge pull request #842 from elzj/wordcount_spec

Moving word counter to its own class for test speed and great justice
Merge pull request #851 from elzj/issue_2911_deleted_subs

Fixing issue 2911: subscriptions to deleted objects
rdoc update
Merge pull request #852 from CristinaRO/issue-3199-chapters-expire-cache

Issue 3199 chapters expire cache
Rename hit counters to stat counters, add migrations for stats, work collection info, and upcoming filter deploy
Merge pull request #859 from elzj/es_db_changes

Migrations for search deploy
Capitalized 'Support'
Merge pull request #843 from scottsds/issue_3269

Issue: 3269 - 404 on password changes on unactivated accounts
Issue 3284: Change subject line for account activation emails
* helm.el (helm-persistent-action-display-buffer): Be sure buffer window isn't dedicated.
* helm-command.el (helm-M-x): Don't handle dedicated window from here.
* helm-utils.el: Disable these pesty messages in describe-* functions.
Don't build *.mk for windows
More windows packaging
Public dashboard view menu failed when logged in as another user. This returns the topbar menu look as before rather than placing the dashboard menu in the submenu
Update ISR declaration: legacy -> modern
Update ISR declaration: legacy -> modern
Fix compiler warning
das schreibe ich jetz sicher nicht neu, ich könnt kotzen
pff gibts halt erstmal keine doku interessiert eh niemanden
müsste hinhaun erstmal nur c&p war noch ne anpassung drinne
Add deferred calling functionality to the Application.
Made sure that index.js includes coffee-script.
转移后提交
add mask out test cases to chewing/pharse table
add mask out test cases to ngram
migrate .Xresources
Second zigzag approach
Second zigzag approach
Code for running feature tests
Aosp/CyanogenMod/TheMuppets From Upstream
update
simulate a list
Autocommit index.tpl
Edit Procfile and package.json
rename to make go-get work
Reuse RoundRobin for CircularFeeder, close #611
Bugfix : Problems with counts
- StatsReportGenerator : Wrong formula for compute koCount
- StatsResultHelper : Problem with null count (should return zero, not NO_PLOT_MAGIC_VALUE)
Merge pull request #707 from gcoutant/master

Bugfix : Problems with counts
CAL-9 fix drag drop and sorting event
updates to group targets, eating behaviors, swarming around user, transition fade
merge
Dear Assets: STFU

https://github.com/evrone/quiet_assets
text needs to be submittable
let us save some evaluation answers
Fake a submit button
Hypothetical constructive logic tactics.

Signed-off-by: Edward Z. Yang <ezyang@mit.edu>
Commit version 1.8 of queequeg.el from http://namazu.org/~tsuchiya/elisp/queequeg.el.
Allow to edit the compilation buffer, to handle control sequence
Fix wrong line number
Modify to display starting column of grammar error
Fix a typo
Fix a typo
Adjust background color from black to #cccccc.
Add demo file
mroe stuffs
fixed pylint issues at metadata.py and nibbler.py
Fixed reseted prefixLength for the hints.

The prefixLength was set back to zero on call of hints_clear so that hinting
with chars didn't work properly. Now the prefixLength is alway given as
parameter to the function hints_create.