Rename _ij1-patches to ij1-tests & remove old code.


git-svn-id: http://code.imagej.net/svn/imagej/trunk@3190 be23795f-a60e-40d4-ba19-055798872e57
Build system fixes:

  * Enable Eclipse annotation processing for all leaf projects.
  * Make SVN ignore metadata more consistent.


git-svn-id: http://code.imagej.net/svn/imagej/trunk@3769 be23795f-a60e-40d4-ba19-055798872e57
Add missing factorypath config files.


git-svn-id: http://code.imagej.net/svn/imagej/trunk@3770 be23795f-a60e-40d4-ba19-055798872e57
Update SezPoz version to 1.9 for Eclipse.

git-svn-id: http://code.imagej.net/svn/imagej/trunk@3831 be23795f-a60e-40d4-ba19-055798872e57
Fix files missing terminating newline.

git-svn-id: http://code.imagej.net/svn/imagej/trunk@4027 be23795f-a60e-40d4-ba19-055798872e57
Standardize references to ImgLib library.

git-svn-id: http://code.imagej.net/svn/imagej/trunk@4028 be23795f-a60e-40d4-ba19-055798872e57
Fix compile errors in IJ1 unit tests.

The Calibration.isSameAs method still needs to be readded (as
CalibrationTools.isSame(Calibration, Calibration)). For now it is coded
to always pass.

It should now be possible to begin addressing failing tests and report
any regression bugs to Wayne. Once they are resolved, we can add the
ij1-tests build to the Hudkins.

git-svn-id: http://code.imagej.net/svn/imagej/trunk@4092 be23795f-a60e-40d4-ba19-055798872e57
Readd Calibration comparison tests.

This fixes ImagePlusTest#testSetCalibration().

git-svn-id: http://code.imagej.net/svn/imagej/trunk@4096 be23795f-a60e-40d4-ba19-055798872e57
Fix FileInfoTest#testGetBytesPerPixel to pass.

git-svn-id: http://code.imagej.net/svn/imagej/trunk@4098 be23795f-a60e-40d4-ba19-055798872e57
Add missing header & copyright to ij1-tests.

git-svn-id: http://code.imagej.net/svn/imagej/trunk@4100 be23795f-a60e-40d4-ba19-055798872e57
Clean up ij1-tests headers.

git-svn-id: http://code.imagej.net/svn/imagej/trunk@4101 be23795f-a60e-40d4-ba19-055798872e57
Fix a bunch of warnings.

git-svn-id: http://code.imagej.net/svn/imagej/trunk@4102 be23795f-a60e-40d4-ba19-055798872e57
fix tests that mistakenly swapped rows and cols of test images. rename test files to represent ImageJ 1.x's axis order convention.

git-svn-id: http://code.imagej.net/svn/imagej/trunk@4109 be23795f-a60e-40d4-ba19-055798872e57
disable test that checked exact pixel layout of arrowheads. removed to accommodate changes in IJ1 for outlined arrows.

git-svn-id: http://code.imagej.net/svn/imagej/trunk@4110 be23795f-a60e-40d4-ba19-055798872e57
update a couple tests to be valid with 1.45q

git-svn-id: http://code.imagej.net/svn/imagej/trunk@4111 be23795f-a60e-40d4-ba19-055798872e57
fixed a couple tests to conform with 1.45q

git-svn-id: http://code.imagej.net/svn/imagej/trunk@4112 be23795f-a60e-40d4-ba19-055798872e57
Remove "imagej-" prefix from pom projects.

They still share a common prefix ("pom-") so they will sort together and
be unambiguous, without including the superfluous and potentially
confusing "imagej" portion. (The groupId already unambiguous identifies
the projects as ImageJ-related.)

git-svn-id: http://code.imagej.net/svn/imagej/trunk@4233 be23795f-a60e-40d4-ba19-055798872e57
Standardize groupId to match Maven convention.

This change will help enable eventual distribution of ImageJ through the
Maven central repository. The requirement for groupId is that it
correspond to Java packaging convention of reverse domain name. Since we
registered imagej.net and plan for that domain to serve as the central
ImageJ resource, the groupId needs to be net.imagej.

In the future, before the final release of ImageJ 2.0.0, we should also
consider whether to use net.imagej as the Java package prefix as well.

git-svn-id: http://code.imagej.net/svn/imagej/trunk@4234 be23795f-a60e-40d4-ba19-055798872e57
Clean up dependencies

Remove unused dependencies, and declare direct dependencies properly.
Also, put a space between project dependencies and third party ones.

git-svn-id: http://code.imagej.net/svn/imagej/trunk@4557 be23795f-a60e-40d4-ba19-055798872e57
Rename POM projects... hopefully for the last time

The previous names were not verbose enough to differentiate from other
non-ImageJ POM projects. This is particularly important in Eclipse,
where each POM project is imported as an Eclipse project with the name
of the artifactId, and no two Eclipse projects can have the same name.
So if you wanted to have ImageJ2 available, you would have a project
called "pom-base" which is ambiguous.

The new POM project names all start with "pom-ij-" to keep them separate
from the JAR projects (which start with "ij-"), while still indicating
that they are part of the ImageJ project structure.

git-svn-id: http://code.imagej.net/svn/imagej/trunk@4559 be23795f-a60e-40d4-ba19-055798872e57