labofsahil/github-event-dataset-2012 huggingface dataset:
bionic: Fix aliasing violations

This makes bionic compile with compilers enforcing
strict adherence to aliasing rules (e.g. gcc 4.6
with -Wstrict-aliasing=2 -Werror=strict-aliasing).

Conflicts:

	libc/netbsd/resolv/res_send.c

Change-Id: I640bafe9fef399f856c9e57cb0ab877e8656e522
Signed-off-by: Bernhard Rosenkraenzer <Bernhard.Rosenkranzer@linaro.org>
Signed-off-by: Evan McClain <aeroevan@gmail.com>
bionic: Add ; after anonymous union declaration

This improves compatibility with different compilers

Signed-off-by: Bernhard Rosenkraenzer <Bernhard.Rosenkranzer@linaro.org>
tools/update_all.py: Fix crash on startup when invoked with a parameter

This fixes a crash on startup due to a misspelled variable name when
update_all.py is invoked with a parameter indicating a non-standard
location of kernel headers.

Signed-off-by: Bernhard Rosenkraenzer <Bernhard.Rosenkranzer@linaro.org>
libm: Add a proper sincos() implementation

Add a proper sincos() implementation that unifies the common
calculations for sin and cos instead of running them twice.

This should cause a speedup even in code not using that
(fairly uncommon) function because gcc can optimize separate
sin() and cos() calls into sincos() calls.

Signed-off-by: Bernhard Rosenkraenzer <Bernhard.Rosenkranzer@linaro.org>

Change-Id: I644578ab443506c7404d2638d6d4917ff6c96f20
Merge "libm: Add a proper sincos() implementation" into ics
Merge remote branch 'upstream/ics' into ics
Force run libtoolize
! change @WebModelHandler.leafPath to @WebModelHandler.leaf
tweaks to make builds work again
Merge pull request #8 from CS340Group/nick

tweaks to make builds work again
Finished batch remove.
Merge pull request #77 from CS340Group/murphy

Finished batch remove.
this is VI but commiting using
Carlos Adolfo Ortizx <carlos.ortiz@localhost.localdomain>
What is going on here?

But it was actually corrected by putting them in the global identity space with the commands
git config --global user.name "Your name"
git config --global user.email you@example.com

if a commit messsage was already typed then use the following commanjd
to correct the commit message

git commit --amend --author="Your name <you@example.com>"

NOTE: This is necessary for Github to identify you in the commits history as you are.
GJ4: Z depth
Merge branch 'master' of github.com:ClubEngine/gj4
Merge branch 'master' of github.com:ClubEngine/gj4
Experimental support for YAML/JSON serialization of specs.
Configs:bashrc-vimrc.
allow adding contacts to activities by the same method
изменены алерты при добавлении студентов
валидация моделей с внешними ключами
изменение формы добавления студента
применил разом изменения, которые делали в hitc`e

изменен способ запроса к бд, изменены модели и представления для
студентов. добавлены элементы на страницу вывода списка студентов
Update graph comparing with UCB1.
Describe LTS in more detail
removed some leftovers
Rewrote some text
Merge branch 'master' of git://github.com/zkf/noisy
Move phase names to constants
Merge pull request #9 from joelkuiper/master

Move MCMC phase names to constants (story #484)
Change version to 0.12.2
Use comparator to ensure order in SpanningTreeIterator
Make convergence summary accept a defined convergence value
Make QuantileSummary accept a list of quantiles 
Bump version to 0.12.3-SNAPSHOT
corrected use of System.arraycopy
Merge branch 'master' of https://github.com/gertvv/mtc into saveMtcSummaries

* 'master' of https://github.com/gertvv/mtc:
  Use comparator to ensure order in SpanningTreeIterator
  Update date range on copyright
  Version to 0.12.2-SNAPSHOT
  Version back to 0.12.1, update READMEs
  Fix compile problems
Version 0.12.2 and README
Version to 0.12.3-SNAPSHOT
Merge pull request #11 from joelkuiper/saveMtcSummaries

Saved version of some MTC summaries (story #443)
Added constructors for saved summaries story #443
Added isDirect getter for SplitParameter 
Merge branch 'master' of https://github.com/joelkuiper/mtc
Merge branch 'master' of github.com:gertvv/mtc
Make Parameters comparable.
Merge branch 'master' of https://github.com/gertvv/mtc
Add MCMCSettingsCache to reduce number of getters. Also, missing file from previous commit.
Never pick up both dice and tokens
Fixed multiple planets
Merge branch 'master' of github.com:DavidMah/speed
latest build numbers
Revert "latest build numbers"

This reverts commit 74a227630febb4cd2a3ae5e2e8822b6acb36df25.
Added "Energizing Spores" to Reminders.
Changed WorldMapFrameAreaPetLevels font.
Merge remote-tracking branch 'Shestak/master'
Restructure repo so d7/d8 (...) versions can become separate branches, not separate subdirectories
fix use of this in static method

started adding tests for changeProjectRepositoryAccess

started adding tests for changeProjectRepositoryAccess

covered changeProjectRepositoriesAccess with tests

fixed tests now that I understand the functionality

cleaned up the code

cleaned up tests
Merge commit 'refs/changes/98/98/1' of http://gerrit.tuleap.net/tuleap into tuleap-stable-master

* http://gerrit.tuleap.net/tuleap:
  fix use of this in static method

Signed-off-by: Manuel Vacelet <manuel.vacelet@enalean.com>
Tuleap 5.4.99.37

Signed-off-by: Manuel Vacelet <manuel.vacelet@enalean.com>
Add advice to load to ensure keybindings have precedence
Add CLI 'find' analog.
Add user following
Finish 11.5.1 and 11.5.2
Added unix specific line.
Updated permissions.
Needed so that we don't pull edown.
да ради бога
обновил звуки
Добавил класс загрузки / сохранения всего состояния всей игры
Merge branch 'master' of github.com:saotele2/shooter

Conflicts:
	shooter/Assets/Shooter/Scripts/SceneBuilder.js
	shooter/Library/assetDatabase3
	shooter/Library/guidmapper
перед пуллом
New flag to order vertices by group
Skeleton class for Walk/Path
Added walk logic and documentation
Fix logic for graph degree
Fix inverted logic for vertex flow
Improve exception error message
Properly handle directed edges
Ability to return random vertex
Static helpers to sort edges and get first edge
Added code to create GraphViz script
Merge branch 'master' of https://netzwerch@github.com/Flos/graph-php.git
Added instance loading via command line

"-l instancename" to launch the login dialog
Changed to GetLinkedInstByName
Use folder name instead for instance launching
Close if launched via command line and login cancelled
Merge remote-tracking branch 'upstream/dev' into dev
Added file download amount sanity check, workaround
Fixed main window to close after an instance that was launched from
command line exits.
Link added and file renamed
Napsána funkce pro přidávání osob
Přidán predikát list?
vnnic ip list
split subnet to
split subnet to /24 and store in db
split subnet when added
only search for 1 entry in /ip API, remove search for subnet (TODO later)
store subnet based on the subnetmask, subnet:first_octet if mask >8, subnet:first:second_octet if mask >16 and so on.
get_subnet return all the subnet possible
update database to last version
added timestamp callback method
Dodana bazka.
Check for cache invalidation on individual database download.
Fixed error with directed graph and added numbers to output
Merge branch 'master' of git@github.com:Guinto/466Labs.git
added new python based skimming step
started incorporating new generalised skimming step
use dedicated iso producer
add muon analyzer
lepton iso producer calculates rho-corr iso
Defaults character info to first one/show their Japanese name
Positioning of time
Slight code cleanup. activated pin 2.3, 2.4...

Currently toggles on/off based on serial in...

Signed-off-by:  <Hibby>
Making OrderedMap work for all neccessary tests.
Fix nullPointerException in CompositeTime and MeanElapsedTime.
Added Tests 2,3,4; Credit for 3 goes to Huggy ;)
Replacing Umlaute in preparation for upload.
Unchecked Exeption fixes
removed my ugly debug folder
Submitting changes just for accessibility at school. Work is largely in progress, but most of the wiry details have been ironed out. As it stands, the order of world building is now: atoms > rooms/containers > portals > things > functions. This order will allow for a protocol to be established with regard to creating world files. More to come tomorrow.
Merge github.com:JoelHough/uMUD
Merge operation
BUGFIX: memory leaks

Add stats to "genetic" algo
Framework for the real genetic algorithm
First real genetic algorithm
Added portal scene.
Removed obsolete connect case.
Revert "Updated git link."

This reverts commit bb80c471fb561e7b37cc94f6846ab4356ca14461.
Fixed path to MIME configuration file.
Started to add skeleton for server configuration.
The server now gives us the static file for the site.
twitter と thor gem を試してみた
connexion Forum VF
Merge branch 'master' of https://github.com/Kazuya-ewo/EWO
moving daily_video_stats to hive
Move daily_video_stats processing from mongo to hive

Summary:
This is part one of a two part change to swtich from mongo to hive. This focus on the data processing.
Need to male some simple changes on the report side to make this work.

Test Plan: Ran the query on my cluster

Reviewers: benkomalo, jace

Differential Revision: http://phabricator.khanacademy.org/D677
Adding the changes for the dashboard
revert the changes for running the daily reports per discussion
Merge branch 'master' of github.com:Khan/analytics
Fix a bug on line 98. import the right packages for the fetch entities.
Revert "Fix a bug on line 98. import the right packages for the fetch entities."

This reverts commit 55e9f8c8b76affe2fae2db121c932597c901dae3.
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
Merge branch 'master' of http://github.com/Khan/analytics
add simple producer and consumer module
Should've check for 'linux2' instead of 'linux' for Linux platform
Ignore errors while creating tile index
Removed sqlite requirement
Reduced rails requirement to >=3.2.0
v0.0.3
Merge branch 'develop'
v0.0.3
Catalogs structure.
View outline
More memory cleanup
Fixed some xdr/sm memory problems and strage modules
updated write_cell method to create a cell at the bottom if the requested index does not exist
Merge pull request #34 from paczian/master

write_cell in ipy appends a new cell
Cambios para administrativos nuevos
Merge branch 'master' of https://github.com/MGGROUP/MEN-19
removing the +[CWSystemInfo logicalRamSize] api due to its reliance on the deprecated Gestalt()
adding bin/docs
Utils\Json::encode accepts options
* xmonad
+XMonad.Actions.Commands

* package.mask
-v8
Added a getter for the sprite of an FButton.
Remove document folder
Grid values read in separate function. Part of triangle generation done.
Start migration
add password
add password
NotBot 试验；加入匿名类型返回支持
deleted tests g rspec and cucumber
mc config modifications
added -T for extracting main content
allow busy players to skip the dialog by leaving the building.
moved WAD key instructions into the same line
fix: don't crash when canceling the input
added an outdated readme;
removed package project files;
moved index;
included js files in the wrong order;
page loads fine without doing anything;
moved files and started new preloader;
everything works with the standalone code now!
Change global javascript variable to local
ASGARD-992 - Fix strict mode violation in AutoScroller JavaScript
Merge pull request #129 from joesondow/ASGARD-992-strict-mode-AutoScroller-JS

ASGARD-992 - Fix strict mode violation in AutoScroller JavaScript
Merge pull request #128 from joesondow/remove-js-global

Change global javascript variable to local
set disabled false to account for grails 2 changes
Merge pull request #131 from jgritman/disabled-changes

set disabled false to account for grails 2 changes
validation - set nullable to true for optional val
Merge pull request #132 from jgritman/validation-bug

validation - set nullable to true for optional val
changes needed for compilation in IntelliJ
changes needed to run unit tests in IntelliJ
controller and assertion methods were not initially seen
patch onelogin toolkit for the JDK on our deployment machines
Merge pull request #134 from jgritman/security-bug

patch onelogin toolkit for the JDK on our deployment machines
one login toolkit - use JVM's jsr105 provider rather than forcing jcp version
Merge pull request #135 from jgritman/security-bug

one login toolkit - use JVM's jsr105 provider 
Merge pull request #133 from claymccoy/grails2inIJ

Changes needed for IntelliJ and Grails 2.1.1
use GString instead of regular string
revert recent OneLogin changes - fixed JVM config on deployment machines
Merge pull request #137 from jgritman/security-bug

revert previous OneLogin changes
fixing renderNotFound method for Grails 2.1 JSON changes
gh issue #136 - keypair not updated for rolling push
Validate service stub code removed and added conformance check call.
Merge branch 'development' of github.com:Newanz/HUSACCT into development
Schlägerbug behoben / Random nach Reset
commit probably final
Class color removed. The color is implemented inside every part
fixed favicon.png
Bug #1193: Fix onedb migrator 3.3.0_to_3.3.80.rb when IMAGE/SOURCE is empty
(cherry picked from commit 3d347d024edc45e6b99c3c0a121062d7fae20961)
EDIT_Complex

open.math.Complex を編集

コメントを修正
modif bib + ajout presentation
merge
fixed tpl.ejohn
GB 1.1
Added a Raycasting test

This has to be re done still then you can check the basis of Ray Casting
if you want
Proste filtrowanie po nazwie
Fix maximum button.
[mr1801] Fix Gameobjects in BG (eye of storm)
El numero maravilloso

Tarea 19/09/12
bug fix commin / merge common autocomplete
toolbar refactor in progress.
refactored component management and cleanup.
Merge branch 'topic-tablet-support' of github.com:Sage/argos-sdk into topic-tablet-support
removed forced use of iscroll.
removed unneeded licenses, adds more docs
There's a bug; event not showing.
Finished PAE and x86 paging completely.
begin to decouple bindings from dot-delimited keypath logic
build
fix: creating slide can choose link to which item now
expand some idea about time travel engine
touch it
new test and small refactor to use request module
fix (and improve!) multi tests
Revert "fix (and improve!) multi tests"

This reverts commit c81ef23e1d8857676638d594ed4ae2db28b56a1a.
passing start_recording kwarg
rename libs and add better documentation
Compiling few special CSS cases into CSS.
Added description to main.cpp
In ZF1 this header was named "MIME-Version". In ZF2 this has been changed to "Mime-Version". Mail headers are case-insensitive, but who knows how many buggy clients are out there and the RFC uses "MIME-Version", too: http://tools.ietf.org/html/rfc2045
packege.json
Merge branch 'master' of github.com:Swizec/melt.ee
don't use reserved words for function names
Merge branch 'develop'
things
1.0.4
add 1 to 99 reduce file
Sloppy tweak to force a module inventory on every undock

Should allow ComBot to gracefully handle changing ships.  This is
"Sloppy" because it won't be able to account for changing ships in
space.
Merge remote-tracking branch 'origin/vendan' into tehtsuo
Merge remote-tracking branch 'origin/vendan' into tehtsuo
Moved target list operations to states so target lists will be ready for LootCans state.
Fixes for using obj_TargetList

Also changed ranges over to .Range instead of _Range
More fixes for salvager due to TargetList change
Better fix - Switch from LockedAndLockingTargets to TargetList
Added IgnoreGate switch to Move:Bookmark

This lets you warp from one deadspace complex to another without
confusion about gate following in BookmarkMove
Merge remote-tracking branch 'origin/vendan' into tehtsuo

Conflicts:
	core/obj_TargetList.iss
Added warp toggle to Move:Approach, defaults to off

Prevents unwanted bouncing between salvage wrecks beyond warp range
Hauler debugging code
Swap lines
reorganization into behavior folder and corresponding setting ui change, rough draft
Cleaning up after reorganization
Added Stop method for all behavior modules, clears the state display
Attempt to fix laser activation spam after dropoff trip
Fixed gate traversal in Salvager
Added turning off Traveling after using Move:Gate
Added option to salvage in belts if no salvage bookmarks are available instead of idling in station
Major Merging
Whaddafuq
Possibility to add its own icon for custom event log

Possibility to add its own icon for custom event log
added a call chain so a statevariable update will now bubble up to the containing service and containing device.
1.6.2, see changelog
fix up prebuilt
SDL/Event: fix data loss bug in EventQueue::Purge()

This method was doing it all wrong.  It copies events that were NOT
removed to the new position within the array, and decrements the
count, as if the event had been deleted.

This bug was responsible for TRAC #2236 and maybe others.
SDL/Event: reimplement Purge()

Use pointers to iterate the array.  This is a lot less obscure than
the previous repeated std::copy() use.
src/Dialogs/FileManager.cpp remove is.empty check

The FilePicker dialog is never opened when there isn't a downloaded
file residing in the data directory.
Dialogs/FileManager: fix excess error messages in file manager

Clear the flags repository_modified and repository_failed after
reading them.  Fixes TRAC #2395.
Android/AbstractPort: don't clear the listenr in close()

The method AbstractAndroidPort.close() is used by
IOIOHelper.XCSUart.setBaudRate(), and clearing the listener each time the baud
rate switches completely breaks reading from the port (TRAC #2277).
This is a major bug which made the LXNAV V7 completely unusable and
broke Volkslogger task declaration.

Since the IOIO subsystem is the only library that reuses
AbstractAndroidPort instances, a setListener(null) call is added to
IOIOHelper.XCSUart.close().
flags.mk: Allow passing extra compile flags

Provide EXTRA_{CPPFLAGS,CFLAGS,CXXFLAGS} to allow adding to the flags rather
than overwriting them
UserGeoPointFormatter: add user_coordinate_format variable

Fixes an assertion failure due to InterfaceBlackboard access from the
DrawThread.
TaskManagerDialog: destroy the TabBar earlier

Fixes an assertion failure on WIN32 because the calculator panel
attempts to hide the "Target" button which has already been destroyed.
IO/DataFile: obey charset on Linux

Don't make OpenDataTextFile() a wrapper for OpenDataTextFileA() on
Linux.  Obey the specified character set.  This fixes a crash due to
malformed UTF-8 data in xcsoar-checklist.txt (TRAC #2396).
debian/rules: disable RTTI

Remove the workaround because we're now using gcc 4.7 to build the
Debian packages.
po: update French translation
release v6.4.2
IO/Source: apply naming convention
IO/LineReader: apply naming convention
Merge tag 'v6.4.2'

Conflicts:
	NEWS.txt
	VERSION.txt
	src/Components.cpp
Android release v6.5_preview1
{Period,Timeout}Clock: move to Time/
Driver/LX: rename Nano.hpp to NanoProtocol.hpp
NMEA/Checksum: return uint8_t
Thread/Notify: fix reversed "pending" check in RunNotification()
chat seen works
Suppress VTK runtime legacy warning messages.

Turned VTK_LEGACY_SILENT on in both paraview and vtk cmake files.
Fixed up referencing in xml to allow it to work for a gem
Update .travis.yml

Check Travis CI.
Correct Repo. Duh.

-Dx
Updated readme.es.rst
home controller and view added
A few changes in compiler(not worth noting)
Added citation for SableCC
Merge branch 'master' of github.com:Zucka/sw403f12

Conflicts:
	report/kilder.bib
Tilføjet virkende symbol table, samt print funktion
More gzip magic.
fixing addmessage
Adding test data + some fix
Merge branch 'master' of https://github.com/abnormy/Mamont
Updated pom.xml to generate javadoc.jar as per Maven Central requirements, and updated release number to 0.1.8 (no SNAPSHOT)
Need a quick answer? Ask the magic 8-ball.
Removed check for OpenGL 1.2 (glPixelStorei parameters)
Include organisation id in session
Add admin and add-user
Split up SCGI server into generic and scgi server.
minor re-wording
more updates
more review changes
Merge pull request #2237 from adobe/randy/readme-sprint17

Update README for Sprint 17
Add process in background options to doSequentially

Do sequentially can now be used to process a list of tasks in time
slices so long-running processes don't block up the UI.
Refactor and add doSequentiallyInBackground

Restore doSequentially to process the list in a blocking fashion and
add doSequentiallyInBackground that does processing in configurable
time slices.
Public Product Backlog - Move Line Up/Down on Key
Move Line Up/Down on Key - Bug Fix and Tests
factored out HTML code hinting fro CodeHintManager to make CodeHintManager more general
Add some tag-specific attributes to HTML tag JSON file.
Read those attributes in from JSON file and filter them with the user input.
Create a new attribute code hints JSON file.
Read global attributes from the new JSON file and combine with other tag-specific attributes before filtering with user input.
Replace Array.prototype forEach with $.map as suggested by Ty.
Merge branch 'master' of github.com:adobe/brackets
Move Line Up/Down on Key - Updating code and tests after review
Add a new HTML5 tag (bdi) and remove 4 more deprecated tags (acronym, frame, frameset and noframe).
Add some missing attributes to td and th tags.
Add "type" property to attributes that do not require any value and rename attribtype property to type in attribute JSON.
Add comments to the attrbute hints APIs.
Implement the insertion of ="" with the attribute name for those non-empty attributes. Empty attributes are indicated with "type: flag" in JSON file.
Fix all JSLint errors and replace all tab characters with spaces.
Replace some remaining tab characters with spaces.
disabled dev tools in brackets-shell
code review comments
Merge pull request #1307 from adobe/jason-sanjose/shell-dev-tools

Looks good
Merge pull request #1009 from jhatwich/jhatwich/asyncAsync

Add Async utility for background processing
Merge branch 'master' of https://github.com/adobe/brackets
Move Line Up/Down on Key - Updating menu shortcuts, using batchOperation, lint fixes in tests
Made GotoAgent.open return a deferred
Made GotoAgent's flash optional (allows to use a different line class after jumping and prevents it from being removed after 1s when the flash is over)
SI-5830 switches: support guards, unreachability

turn switches with guards into guard-free switches by collecting all cases
that are (possibly) guarded by different guards but that switch on the same constant,
and pushing the implied if-then-else into the collapsed case body

```
case C if G1 => B1
case C if Gi => Bi
case C if GN => BN
```

becomes

```
case C => if (G1) B1
     else if (Gi) Bi
     else if (GN) BN
     else default() // not necessary if GN == EmptyTree
```

default() is a jump to the default case; to enable this, we wrap a default() { } labeldef
around the last case's body (the user-defined default or the synthetic case that throws the matcherror)
so we can jump to the default case after the last guard is checked
(assuming unreachability is checked, once we ended up in a non-default case,
one of the guards either matches or we go to the default case)

the unreachability analysis is minimal -- we simply check (after rewriting to guard-free form)
that:
  - there are no duplicate cases
  - the default case comes last

misc notes:
  - can't jump in exception handlers (TODO: a more fine-grained analysis on when we need to jump)
  - work around SI-6015 (test file run/t5830.scala crashed the inliner)
  - propagate type of case body to label def of default case
    (needed for existentials, see e.g., t2683)
  - the default(){} LabelDef breaks SelectiveANFTransform -- workaround: don't write guarded switches in CPS code
    (do the above transformation manually)
-Ypatmat-debug
WIP: SI-4691
WIP: SI-6008
wip si-6008: prune redundant type test
Remove MongoDB
Add factory_girl_rails
Migrate fabricators to factories
Fabricate -> FactoryGirl
Reload models on update factories
Remove verbose configurations
Merge branch 'feature/install_factory_girl'
only detection eyes
finished highlight reel… i think

highlight reel works. it supposedly lets you edit the entries.
ChangeLog is modified.
License files are added.

 * License files are added. COPYING, COPYING.ja, GPL, LGPL are taken
   from Ruby's svn repository.  LEGAL is written for BioRuby.
Added descriptions about license to refer COPYING and LEGAL
Modified COPYING for BioRuby, following Matz's recommendation in [ruby-list:46293].
Newly added unit tests for Bio::Sim4::Report with test data

 * Newly added unit tests for Bio::Sim4::Report with test data.
   The test data is based on the data provided by Tomoaki NISHIYAMA
   ([BioRuby] SIM4 parser), and most of the sequence data is
   replaced by random sequence.
Ruby 1.9 support: String#each_line instead of String#each
Bug fix: parse error when an intron is splitted into two lines

 * Bug fix: parse errpr when the alignment of an intron is splitted
   into two lines. Thanks to Tomoaki NISHIYAMA who sent the patch
   ([BioRuby] SIM4 parser).
Bug fix: parse error when unaligned regions exist

 * Bug fix: parse error when unaligned regions exist. Thanks to
   Tomoaki NISHIYAMA who reports the bug ([BioRuby] SIM4 parser).
 * To confirm the bug fix, tests are added with new test data.
Document bug fix: Bio::Sequence::(NA|AA|Generic)#to_fasta are currently not deprecated
ChangeLog is modified
Version number changed to 1.3.1-rc1
bioruby.gemspec is regenerated
Preparation for bioruby-1.3.1 release.
BioRuby 1.3.1 is released.

ChangeLog is modified, and bioruby.gemspec is regenerated.
Bio::BIORUBY_EXTRA_VERSION is changed to ".5000".
Newly added Chromatogram classes contributed by Anthony Underwood.

 * Newly added Chromatogram classes contributed by Anthony Underwood.
   See git://github.com/aunderwo/bioruby.git for details of development
   before this merge.
Newly added PhyloXML support written by Diana Jaunzeikare.

 * Newly added PhyloXML support written by Diana Jaunzeikare.
   It have been written during the Google Summer of Code 2009
   "Implementing phyloXML support in BioRuby", mentored by
   Christian Zmasek et al. with NESCent. For details of development,
   see git://github.com/latvianlinuxgirl/bioruby.git and BioRuby
   mailing list archives.
 * This is a combination of 119 commits. The last commit date was
   Mon Aug 17 10:30:10 2009 -0400.
Made the code compactible with libxml-ruby 1.1.3 (previous was 0.9.4) version.
Added ncbi_taxonomy_mollusca_short.xml test file
Renamed output files generated by phyloxml_writer unit tests.
removed Xmodmap contents.
Got rid of experimental code.
Site updated at 2012-06-10 15:10:25 UTC
make a tiny thumb too
chg size of tiny; do/avoid thumbing for each size.
display tiny thumb on stats page
Merge branch 'thumbs' into develop
closed batch and interactive system added
port jvm_features to C9 infra changes
jsdav update
Nuke build dir; move worker/mode/theme stuff/fix tmpl files for infra
Make git-hg executable
Fix usage messages

It's "git hg", not "hg git"...
Add initWithJson in todayMealVC
* update french/baruwajs.po translation
Merge pull request #4 from crashdump/patch-1

* update french/baruwajs.po translation
添加文件工具类方法
push homework w1
fixes #86: fixing "delete" feature, when deleted torrents removed from gui. Also, I've probably fixed #88 with this one - need to check
deleted er.dia backup
Bug 800398 - [App Icons] Need A Wallpaper Gallery App Icon, a=vivien
removed an unneeded include.
Add flag to only apply damage cooldown for PVP
taking new specwatchr for a test drive
added ifs for dots and line
fix optiboot for 1284
get rid of result files
get rid of generated files
Merge branch 'mighty_644p_1284p' into joost
wiki: Add docs.
wiki: Remove c.page_obj.
wiki: If no edit_date, do not attempt to convert it.
wiki: Use c.site.path.
wiki: Added missing discussions rss endpoint.
wiki: Add missing json endpoints.
- pages list
- discussions
- settings
wiki: Fix broken view json template.
vmodhash: Check mock modhash value for testing.
wiki: Remove globals.
wiki: Remove c.show_wiki_actions.
wiki: Handle wiki_edit_age or wiki_edit_karma being None.
base: Add a method to inject variables into r.setup
account: Correct can_wiki permissions for trac.
Trac requires None to map to False, where as in new wiki it maps to True
wiki: Fix create redirect when no page name is specified
middleware: Add missing error code 409
wiki: Correct mod only editing mode ignoring page editors.
wiki: Correct error on content length error on wiki revise.
wiki: Properly render revision user.
wiki: Use ThingJsonTemplate for wiki json.
wiki: get_editors should return a list, not dict.
base: Add a method to inject variables into r.setup
Let `help` work even without a configuration file
Write srsly(1) man page
man page revisions
CS: Consistently use ++ over ++
Add unit tests for access matching
Optimize access host matching to be O(1) instead of O(n)
Type: Excpetion => Exception
Remove setters in favour of making some properties public
Updated submodule ezp-next
Merged API and impl Request object
Moved remaining values into Core
Fixed WriteSingleRegister
addsolarized color scheme & make macvim colorscheme to solarize
Add matching multiplexing, it's now concurrent.
Change the matcher interface in the chanstats struct.
Add matching.
Move churn to its own file.
Fireball damage player
Use git instead of https for vimsubmodule
throw out twilight theme
add twilight theme
updates for emacs24
update vim
add js2-mode
Reordered alphabetically
Added ubuntu-font-family
Add myself to maintainers.nix
Improved meta section for ubuntu-font-family
Reordered alphabetically
sha256 in base32 format
Cleaning up ubuntu-font-family
ubuntu-font-family: free is a string, not var
ubuntu-font-family: rec back
Merge pull request #19 from antono/ubuntu-font-family

Added ubuntu-font-family
TOMEE-686 - JAX-RS @Context injection for EJB interceptors
TOMEE-687 - Refer to internal EJB BeanContext via WeakReference in JAX-RS layer


git-svn-id: https://svn.apache.org/repos/asf/openejb/trunk@1426887 13f79535-47bb-0310-9956-ffa450edef68
Turned off debugging and re-enabled full regression tests
First iteration of automatic prefetchable statement calculator.
Merge branch 'strangelove' of github.com:apavlo/h-store into strangelove
Huge Refactor: Moving all of the benchmark code out of the 'tests' directory and into 'src/frontend'
Updated benchmark properties files
Broke out benchmarks test code into test directory...
Untwined interdependencies between benchmarks and test code
Moved some last test cases
Fix for running tests from the commandline
Let's push this up and try it on EC2
Forgot that we disable the TransactionProfiler after we stop it for a txn
Fixed formatter for Procedure conflicts in CatalogViewer
Refactored out some of the pieces of the CatalogViewer into separate files.
Added new graph visualization of Procedure conflicts to CatalogViewer. This was pretty easy to add too...
Lots of refactoring and cleanup of MarkovEstimator code. The MarkovPathEstimator must be given a MarkovEstimate now (which means that caching might not make sense...) #93
More refactoring for new MarkovEstimator stuff #93
I'm troubleshooting blind! Yay for this sucking.
It helps while putting up sprites if one links to them correctly

- fixed link to url for sprite
- swore for a while
Fixed memory management errors
Part of TISTUD-1875 TISTUD-1877 TISTUD-1888 - Move the isCompatibleVersions functionality into the VersionUtil class
Fixed TISTUD-1840: forced a change in individual editor plugins that are dependent on formatter plugin.

Conflicts:
	plugins/com.aptana.editor.css.formatter/META-INF/MANIFEST.MF
Cleaned up some whitespace and removed unused method.
Basic javascript execution from entities property
Application bugfix
Enabled pretty logging
Changes:
* started using game objects (subclass of pygame.sprite.Sprite)

Plans:
* class for inanimate objects
* game class for encapsulation
* factory class for making game objects
CSPACE-5727: Cleaned up comments throughout. Log a success message indicating how many CollectionObject records had their computed current locations updated.
CSPACE-5727: Current locations for CollectionObjects are now also re-computed when the lifecycle state of related Movement records are transitioned in any manner, including to/from the 'soft deleted' state.
CSPACE-5727: Revised comment for clarity.
CSPACE-5498: Initial pseudocode for event handler on document soft deleted transition.
Catch disconnected sockets on Solaris

It seems like poll() was not producing a POLLHUP
so we rely on qb_ipc_us_recv() returning -ENOTCONN.

Signed-off-by: Angus Salkeld <asalkeld@redhat.com>
Question 01 started
Removed requireJS, moved to a plain simple Node compiler and production environment.
updated gene
Merge branch 'master' of https://github.com/atacchet/6.867
Finished tank server.
UNDO _add_map asert
Typos
Playing with unix socket.
Add FLV encoding type
Merge pull request #129 from atlasapi/mbst-1779-add-flv-encoding

Add FLV encoding type
Script para compilar e executar exercício1
some moderate fixes for gmail, coloring/lock works but text hasnt been finished..but i have a flight lol
moved IsContentLost to RenderTarget2D where it belongs
Fixed bad cast in rect.Contains().
Fixed null reference to Threading.BackgroundContext...?
Being a little less wasteful with creating the background context.
Merge remote-tracking branch 'upstream/develop3d' into develop3d
Fixed LaunchParameters for WINRT.
Merge remote-tracking branch 'upstream/develop3d' into develop3d
Merge remote-tracking branch 'upstream/develop3d' into develop3d
Fixed missing usings for [DataContract].
Removed read flag from DX11 VertexBuffer creation... i think its not nessasary.
Merge pull request #529 from SickheadGames/develop3d

WinRT and iOS Fixes
Merge branch 'develop3d' of git://github.com/mono/MonoGame into develop3d
Trying to add 32-bit support for applications like Doom-3 on multilib x86_64 platforms.
Makefile and rules for Gentoo updated
less warning messages
Installation of 32bit lib*faker.so
Uninstallation of 32bit lib*faker.so
Gentoo lib32 symlinks changed
Flush request queue after X-server start
Trying to add multilib on Debian 6.0
Merge branch 'develop' of git://git.backbone.ws/snail/snail into develop
multilib for Verne
multilibs for Debian-6 (previous was for Wheezy)
multilib for Ubuntu 12.04
multilib for Ubuntu 12.04
Changed target folder wildcards
Update target/bin folder exclusion
Revert "Committer: frank001"

This reverts commit 2016049f0b6702722a0700667af570d1be5092f0.
fixing parsing of external table nodes functions
Updated leveldb version for repair limiting.
Rinari updated
Old ruby-mode removed
Remove old modules (Emacs24 ahas js2)
Add goods without images
#7 Commenting changes
-
doc & cosmetics
[-] Removed duplicate ActiveX plugin
Bug fix: ONERROR invocation
3.0=beta initial commit
Add charset meta-tag to layout
Stop cached queries from being re-executed
fixed to handle arbitrarily large data
URLS werden bei bedarf über eine andere URL "geleitet"
Checkstyle doesn't need all the deps on its classpath.
extended the persist method so that it accepts a Seq[DList[T]]
using the latest specs2 version
added the sonatype snapshots repository
Re-add the WordCount example
made sure that the classLoader which is linked to the configuration doesn't get serialized when an object is serialized
Fix bug in 'GBK relatedness' algorithm.

The 'GBK relatedness' algorithm is responsible for traversing the
computation graph and identifying clusters of GBK nodes that are
"related" and can therefore be exectued as part of the same MapReduce
job (i.e. same MSCR). Fix bugs in the algorithm where it is being to
greedy in its determination of whether two GBKs are related.
Specifically:

- Relatedness via shared ParallelDo inputs should only include Arr-shaped
  nodes, not Exp-shaped nodes;
- Check for indirect GBK dependencies through existing related GBK
  clusters.

Add Specs that exercie the bugs.
fixed the optimisation of combine nodes to parDos
fixed an infinite loop with fromTextFileWithPath
In ClassBuilder, cast the literal to a byte for the Byte Constructor
fixed the serialisation issue related to the configuration attribute that was stored on data sources
trying to fix the broken acceptance tests following the previous commit
fixed more acceptance tests
fixed the caching for Seq and Function inputs
Merge remote-tracking branch 'upstream/master' into wire-format-22-args
Localize version to have -benwing after it
Intentando arreglar scrollTo para el axis x
remove TestCrossPlatform
Add less as js asset
bug 811293: one-off partner repacks should sign with the signing server instead of by hand - add function/script to get a token. r=catlee
Merge branch 'master' of git://github.com/mozilla/build-tools into one-off
try switching back to raw urllib again
Add new test option set the version in generated certificates: this
is needed to test some profiles/protocols which reject certificates
with unsupported versions.
no version-hash for scripts & styles -> version bump 1.1
add "Load more..." to profile #18501
minor fixes for #18501
#18509  - Show WFH neighborhoods in the venue list
#18513  - Remove the invite and sponsorship feature
#18513 - Remove the invite and sponsorship feature

- Message body update
- sponsoship leftovers removal
#18513 - CR Fixes
Merge pull request #116 from birarda/master

remove wallet and add funds VCs
Merge branch 'master' of git://github.com/worklist/cp_ios into 18513

Conflicts:
	candpiosapp/Settings/SettingsStoryboard_iPhone.storyboard
bad merge fixes
Merge pull request #113 from stojce/18513

Code Review for Job #18513
Merge pull request #117 from birarda/master

fix crash in clicking on user image in venue info VC
fixing height of settings menu
Merge pull request #118 from stojce/fix-height-settings

fixing height of settings menu
fix typo; show error message for "more" in profile
Merge branch 'master' into 18501

Conflicts:
	candpiosapp/User/UserProfileViewController.m
	candpiosapp/mustaches/UserResume-prebadges.mustache
Merge pull request #109 from heracek/18501

Code Review for Job #18501
#18538 - you can't turn on skills you have not received recognition for
Merge branch 'master' of git://github.com/worklist/cp_ios into 18509

Conflicts:
	candpiosapp/Venue/CPVenue.m
Merge pull request #112 from stojce/18509

Code Review for Job #18509 - conflicts resolved
Text changes: variants of Recognition to Endorsements
adding fabfile.py to ignoring files
Fixed clang compile errors in stb_image.
- Extended Graphics/Flua ... image::LoadTexture to autonegotiate Bitdepth (RGB or RGBA)
- LoadTexture: RGB -> BGR and RGBA -> BGRA
Merge pull request #2 from GWRon/master

Automatically determine bit depth / order on loading textures
Fixed a few logical bugs in the new code, tweaked some other code. Why a seperate function after all? So you can easily return from DoNextCombatManeuver.
Pushed through warlock changes to mage. Rotations need a lot of work still but at least it's spec based now instead of round robin random. Oh, and a good step forward, I'll hope you agree...
Create the item entity and his type
Add the form to create a post-it
Style the form for item creation
Display the post-it
Versionnable the Item entity
Mising a method to get all PMVs that there are into our database.
added cairo-1.10.2 witch includes pixman-0.20.2 & libpng-1.2.40 if needed
CSS whitespace fix
el-get package management
fix: file encodeing
NPM install jaydata-genx/Logger baseclass/node.js DOMParser for datajs
merge
oData Metadata generator require jaydata-genx
Merge remote-tracking branch 'jaydata/development' into development
moved visualization stuff to visualize.py and added initial line chart parsing function
SAKIII-5553 Incorrect default icon for groups in permission displays
SAKIII-5553 incorrect default icon for pseudogroups
SAKIII-5563 Incorrect autosave as a viewer results in 403
Merge pull request #2057 from bp323/SAKIII-5563

SAKIII-5563 Incorrect autosave as a viewer results in 403

* bp323/SAKIII-5563:
  SAKIII-5563 Incorrect autosave as a viewer results in 403
Adding Sanity test: Verifying that UI is drawn and application is loaded
added iterator
reverser: factory function for std::reverse_iterator
Removed the css directory
Revert "Removed the css directory"

This reverts commit 4c5be91b3cf26fe1cb9afae700ae8c63ff67cc20.
Removed css directory

Its easier to keep the style.css in the root directory of the wordpress
theme, but by default the build script expects css to be in a 'css'
folder
Allow non-input fields to work, too #25

Along with the updated caret file, this file allows users to add contenteditable to div tags.
- adding go file
added entitiy decoding. Still doesn't work for mysterious reasons
unicode plugin: don't print out control characters
Kata 002, two solutions.
To prevent crash cellForRowAtIndexPath return a basic cell if DEBUG is not set
[CellMapping] Fix managed table model bug
Fix dos line endings (Issue #45).
better ribbon placement
new usage examples
first attempt to create print version
links for the list view; minor fixes
inner navigation section removed
EOL
better vendors order
Updated recipes to include variant definitions for variable sections
binarysearch had a bug, new map feature
stringbuffer pushBack(format, ...)

had to hack a stupid link bug
Removed redundant const
admin.py: add example usage for msg
admin.py: add documentation, tweak rule, add example usage
admin.py: add op command
admin.py: add nick command
Add fortune.py
tell.py: use pastebin if maximum = 3 is reached
Add title.py
Add fetchYoutubeTitle.py
#139: Improve docs and more tests
Licenses on java sources
Trocando baseurl.
Added Graphics to default run-time environment
updated colors for Constants and Special #Vim
pass context to export()
dialog 模板修改
fitting plots, configuration per bin added
css

done cssing all possible buttons so far
added doxygen to final
Added support for different output formats
add flashvars in kindeditor config
Upgrading to version 0.10.0
Added requestId to RKRequest class
recordRequestId -> requestId
Applying previous changes from master branch

1) Added database versioning in RKManagedObjectStore
2) Removed Timeout Cache Policy in RKRequest.h
3) Changed comment in RKRequest.m
4) Moved database from Documents to Library folder in RKDirectory
5) Added multiple build configurations
Merge and recordId name change
Migration code from previous Restkit version
Apparently I need to check in this merge again
Merge with v10
Now passing pictures attr in PropertyController's editPost, in order to maintain the form's state in case of an error.
Merge pull request #122 from acrespo/issue120

Now passing pictures attr in PropertyController's editPost, in order to ...
is stmt closed
Update README, use Markdown.
now prints date
doc: improve documentation
Continued work on device request specs.
Exit code should be 1 if asynchronous errors occurs

Regression introduced in 692cb71ec2100e0f1dcb3add2d14dc93ef864e9f.

Fixes #4.
fork rewrite
Fix up demo and stop depending on std
fix var name
not amd styleg
custom add-on example improvement
adding more tests
Adding programs to unit tests
adding subtraction to unit test
Merge branch 'master' of https://github.com/cmaher/flexsym
导入Assets静态文件管理类
按Assets类的规范格式化静态文件
创建Assets的助手函数，方便在views中使用
修正Assets类中的CI super global变量，并设置自动加载
完成JS文件的自动压缩、合并make脚本，并应用在视图中
完成CSS文件的自动压缩、合并make脚本，并应用在视图中
完成 makefile 核心逻辑的编写
Merge branch 'feature/make-assets' into develop
Remove legacy package.el...

Signed-off-by: Jeff Mickey <j@codemac.net>
Sorry, a huge commit
removed redundance
added columns to videos table for calculated views, and rake task to populate them
adding whenever gem for cron management
Merge pull request #4 from confreaks/homepage

Homepage
updated top three videos all time
added a few more tests for ?
basic implementation of association reflection (WIP)
TST: add numpy as a dependency for tests.
track since for each repo
Merge branch 'master' of github.com:cpetzold/ghbot
fixed README links again
add: app skills
some additions to the README
add PythonStandardLibrary
rtd comments
fixed title
Initial commit.
Merge branch 'master' of github.com:cthrax/Toolbox
AS7-4864  Extract and apply CapeDwarf changes to existing subsystems; JPA, Weld
Parser cleanup & JSP configuration expressions
literal translation
litral translation
Add ability to upload files
Change default code template for new classes
speed-up of computation of dual objective using primal variables (Vs)
default num_cpus to 1
Version bump to 0.8.2
Fixed bug where you can attempt to interact with terminated processes
Regenerate gemspec for version 0.8.2
Improve test_fetch_last_exception to be valid from python 2.4 and up.
Add try/finally clause in the send_magic_packet to ensure the closing
of the socket in case of any error in socket.connect.
fonction inserer externalisée
Varios cambios

Signed-off-by: David Antonio <daam37@gmail.com>
Varios cambios

Signed-off-by: David Antonio <daam37@gmail.com>
Fix ergoprog-beginning-of-block.
Sibling page/folder as variant, not as default

In my opinion the fact that your new page or folder gets created as child
is a bit astonishing. This patch fixes the weird behavior.
Merge remote-tracking branch 'origin/wishes' into wishes
forget request forgery
post to by-name, import logger, must debug
change method, change variable name
fixed view path, trying to debug,
Uke3
add option to no update repository on refresh
make sure "nodes" is an object before returning true (typeo). fixes 0.nodeType is null or not an object js error
rss: supports specifying keywords as conditions for rss feed
enconstado Form e FieldSet e melhorados os CompositeElements
Compile with -Wall
Do not inline mutually recursive functions
Comment splitting
Clean up and comment contract translation
Generate comments when readable option on testsuite runner
v303
support for SotD is in
sotd good to go
tweak
Merge branch 'feature/sotd' into develop
Merge branch 'release/v3.0.3' into develop
Tree-shaking on is checks, and share the same code with optimizations on HThis.
Review URL: https://chromiumcodereview.appspot.com//10272013

git-svn-id: https://dart.googlecode.com/svn/branches/bleeding_edge@7217 260f80e4-7a28-3924-810f-c04153c831b5
Fix a problem building JavaLuceneAdaptor with OpenJDK

The ERLuceneAdaptorContext class references the
com.sun.xml.internal.ws.util.ByteArrayBuffer class causing problems
when compiling on Linux with OpenJDK. This commit adds the
-XDignore.symbol.file=true argument to the compiler to workaround
the problem.

You can find more information about the problem here:
http://andrew-haley.livejournal.com/695.html
some cleanup for qualifier classes
suppress unchecked warnings
use StringBuilder when concatenating arbitrary strings to lower memory footage
fix some javadoc, remove unnecessary empty lines
Check if a Framework installed
Don't show warning if true
Add Access Permission for ActionBar
Add Localization
Localice DebugFlags
Add unique Error Check
Use now 'Hint.' as Starting String for Localize
Add log.isDebugEnabled to File
Add Parameter and javadoc
cleanup
Add Hint and Correct Boolean Support
Change to UTF-8
If we insist on using a @project in javadoc...
Some testiness, and an application that could be used on wocommunity.org to track testing results.
And more testiness...
post deployment
Merge branch 'master' of https://github.com/davibq/SIA_ERP
RDMA added (wip)
'
experimental:: bug fix
Bugfix again on experimental namespace
Correct average events per day data
made #freeze tests work on rubinius
fixed digraph implementation on rubinius
added happy/sad faces for tweet sentiment
User list update
search query on public page