Import solid2srf-0.6 into main trunk for development. Update from vendor branch

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Imported solid2srf-0.61 changes, rebuilt autoconf files, added ignore properties, created autogen.sh

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Imported changes from 0.62 vendor tree. Local mods for clean build on RHEL4, regen autoconf

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Updated configure name and version so make dist works

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Imported changes from 0.6.4. Makefile.am changes for successful make distcheck

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Add glob and filter options to spchexport2.py

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Imported 0.6.5 changes. Passes make distcheck

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Imported v0.6.5.1, autoreconf -i

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Imported changes from solid2srf_v0.6.6 tarball

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[ASIM] Patch for 0.6.6 pair mismatch bug

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Changes to support gzip compression on input files. Uses pipe open.


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autoreconf -i after configure.ac changes


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Latest updates 0.7.1

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Added ability to convert SRF format for SOLiD to FASTQ format.  This is not yet part of the make process.

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Moved FASTQ stringification code to FASTQ frontend. STL Algorithm for output. Verbose diagnostic output. Suppress output of empty tags. 0.7.3-beta release

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Use right algo for string

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Corrected npos bug.
Fixed indentation.


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Moved scripts to utils. Fixed double free. More textual output for diagnostics. Version bump to 0.7.4

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Write index after splitting unindexed file

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Off by one error in string check

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