Initial template project for Sequence Utilities taken from textractor and other projects.

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/trunk/squil@13166 60cd2ccc-2b05-0410-9566-da273a940bff
Removed file/folder

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/trunk/squil@13167 60cd2ccc-2b05-0410-9566-da273a940bff
Ignore IDEA workspace file.

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/trunk/squil@13168 60cd2ccc-2b05-0410-9566-da273a940bff
Add test infrastructure to project.

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/trunk/squil@13170 60cd2ccc-2b05-0410-9566-da273a940bff
Write temporary test results to a different directory so cruisecontrol reports do not count tests twice.

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/trunk/squil@13171 60cd2ccc-2b05-0410-9566-da273a940bff
Add squil to the common utilities.

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/trunk/icb-commons/squil@14291 60cd2ccc-2b05-0410-9566-da273a940bff
Move the Fasta Parser into the common utilities project.  This has been on the list of "thinge to do" for some time.

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/trunk/icb-commons/squil@14293 60cd2ccc-2b05-0410-9566-da273a940bff
Move the Fasta Parser into the common utilities project.  This has been on the list of "thinge to do" for some time.

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/trunk/icb-commons/squil@14294 60cd2ccc-2b05-0410-9566-da273a940bff
Javadocs were not in the correct location.

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/trunk/icb-commons/squil@14297 60cd2ccc-2b05-0410-9566-da273a940bff
log4j configuration is a mess when there are spaces in the directory - makeurl should solve having to futz with the build file to get this to work properly.

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/trunk/icb-commons/squil@14302 60cd2ccc-2b05-0410-9566-da273a940bff
Remove empty directories from subversion.

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/trunk/icb-commons/squil@14400 60cd2ccc-2b05-0410-9566-da273a940bff
Add a target to build a jar file for squil (sequence utilities).

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/trunk/icb-commons/squil@14402 60cd2ccc-2b05-0410-9566-da273a940bff
Add build version info to squil api and jar.
Add missing jar file for findbugs analysis.
Add missing  GPL header.

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/trunk/icb-commons/squil@14404 60cd2ccc-2b05-0410-9566-da273a940bff
Update javadocs and headers to include 2008 - Happy New Year!


git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/trunk/icb-commons/squil@14662 60cd2ccc-2b05-0410-9566-da273a940bff
Moved trunk to icb toplevel

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/icb/trunk/icb-commons/squil@14801 60cd2ccc-2b05-0410-9566-da273a940bff
update external link for testsupport

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/icb/trunk/icb-commons/squil@14816 60cd2ccc-2b05-0410-9566-da273a940bff
First draft of tool to convert Illumina SNP report to plink lgen format.

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/icb/trunk/icb-commons/squil@16733 60cd2ccc-2b05-0410-9566-da273a940bff
Tool to convert dbSNP tab delimited data to the plink map file.

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/icb/trunk/icb-commons/squil@16734 60cd2ccc-2b05-0410-9566-da273a940bff
Move files from squil into plink-adapters

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/icb/trunk/icb-commons/squil@16736 60cd2ccc-2b05-0410-9566-da273a940bff
Move files from squil into plink-adapters

git-svn-id: https://pbtech-vc.med.cornell.edu/public/svn/icb/trunk/icb-commons/squil@16737 60cd2ccc-2b05-0410-9566-da273a940bff