labofsahil/github-event-dataset-2012 huggingface dataset:
Updating Gate.Builder.Tests for new Owin signature
Continued updates for OWIN changes

Adding Request back into Gate library
Typo
simplified StatusBar
Add more logging.
Fixes SI-4717.

A lazy val declared inside an anonymous class inside a specialized
context no longer crashes Duplicators.

Previously, a duplicated lazy val was assigned to the wrong owner
in Duplicators:

    def x[B >: A]: Unit = new Bounds[B] {
      lazy val it = ???  // def or val okay
    }

Above, the `it` in `$anon` in `x$mcZ$sp` had its owner set to `x$mcZ$sp`
instead of `$anon`. This crashed the typer when it had to retype its
lazy accessor, because there was no `lazy var it` in `$anon$`.
Furthermore, the duplicated symbol wasn't being added to the list of
declarations of `$anon`.

Changes:
1) `invalidate` in Duplicators takes an additional parameter which is
the new owner of the new symbol that has to be duplicated. If this parameter
is set to `NoSymbol`, then the new owner is `context.owner`, as before.
2) the newly created lazy val symbol is being added to the list of
declarations of its new owner.

Removes debugging output from the previous commit.

Review by dragos.
@mention dragos
Further fixes SI-4717.

Only adding a lazy val into list of declarations if the owner is a class.

Review by dragos.
@mention dragos
Fixes previous commit.

Should be checking if the owner of the new symbol is a class, not the new symbol itself.
Fix @varargs forwarder generation in the presence of nested templates.

Makes `newMembers` a Map[Symbol, Buffer[Tree]] to ensure we add the forwarders to the right template.

Closes SI-5125.
Improve test for SI-5125.

Uncomment a line, as was the intent.
Pending test for SI-3899.

The super accessor for the Java varargs method impedes Uncurry's
efforts to convert repeated arguments to an Array. I'm not sure how
to fix that.
Test case closes SI-3880.

virtpatmat ftw.
SI-5760: Improve error message for package$Klass conflict with Klass

Added a clarification to DoubleDefError for when the previous symbol
was in the package object but current symbol is not.

This was actually supposed to be an opportunity to hack partest to
run the two-step failing compilation, but somebody beat me to it and my
rebase failed.

The next hacking opportunity might be to add .pt script files!  The
possibilities are endless.
Merge pull request #576 from axel22/issue/4717

Fix SI-4717: lazy val declared inside an anonymous class inside a specialized
context no longer crashes Duplicators.
Merge pull request #587 from retronym/ticket/5125

Fix @varargs forwarder generation in the presence of nested templates.
Merge pull request #590 from retronym/ticket/3899

Pending test for SI-3899.
Merge pull request #591 from retronym/ticket/3888

Test case closes SI-3880.
Merge pull request #593 from som-snytt/ticket/5760-pkgobj-warn

SI-5760: Improve error message for package$Klass conflict with Klass
fixed generation of uuids on CommandSender by including a new uuid module in node_modules, wrote some tests for CommandSender
format output
more controlled output
default block time 1s
added script to prepend output to i3status output
Adding webmock and vcr setup.
Changing c to config in VCR block.
Adding dependencies to spec_helper and using non-deprecated versions of vcr methods.
Using correct webmock version.
Adding HTTPClient.
Making :vcr work.
Fetching correct steam_id.
Adding .rvmrc
Port test-fs-utime from node.js
Merge pull request #310 from hnakamur/test-fs-utime

Port test-fs-utime from node.js
fix build on windows
Merge branch 'master' of github.com:luvit/luvit
add files
add basic functionality
list
Merge branch 'master' of github.com:lynx-r/trmo
filter is_for_main.
Remove autotools generated files.
Add debian directory for .deb packaging.
Refs #491.

Summary:
1. Testing for add local_price.
Added sample file upload sample.
Implemented RLE to reduce map file sizes.
Improved mac compatibility.
DoubleWumbles
Wumbles
Merge branch 'master' of github.com:marykw/RBOR
Merge branch 'master' of github.com:marykw/RBOR
Merge branch 'master' of github.com:marykw/RBOR
Merge branch 'master' of github.com:marykw/RBOR
Wumbles
Wumbles
Merge branch 'master' of github.com:marykw/RBOR
Wumbles
Merge branch 'master' of github.com:marykw/RBOR
Wumbles
Wumbles
Wumbles
Merge branch 'master' of github.com:marykw/RBOR
poprzekladany layout; 404 z redirectem zeby lepiej sledzic
added few lines to git ignore file
Make resampling precision configurable.
Simplify.
Run correct fork, pass back errors
Test for proper error handling
WIP kqueue.
WIP kqueue.
WIP
WIP
WIP
WIP
WIP
WIP
WIP
WIP
WIP
WIP
WIP
WIP
WIP
WIP
Set up Project 2

First Commit - Creating a calculator for project 2
EE bundle.
EE source.
Added check in and check out logic
rose test-suite: update
rose test-suite: remove debug
Merge pull request #258 from benfitzpatrick/test-suite-macro

rose test suite: macro
Revert "add Speedmod MDNIE/sharpness"

This reverts commit 9be87d5d336f1f3a43aa8486342c1970c7ace96a.
remove IFn impl from text nodes
Merge branch 'master' into master-dev

* master:
  videodb: fix wrong path for season lists (fixes #13392)
  cleanup - removed over 200k from the project - cleanup - moved ajax commonalities to dedicated library - cleanup - removed unneeded jQuery.proxy calls - cleanup - removed comments - performance - much faster replace - cleanup - upgraded jquery to 1.8.2, removed unreferenced js files - performance - lossless image size reduction with smushit
  [omxplayer] add support for pause and seek of LiveTV and recordings
  [aml] specify amlplayer's capabilities
  [pvr] empty string as default value for pvrpowermanagement.setwakeupcmd
  [pvr] fixed - don't reset add-on instance properties when the add-on couldn't be created, so the log shows the correct add-on name
  [pvr/addons] fixed - return the exact ADDON_STATUS in CAddonDll::Create() instead of a bool, and disable PVR add-ons that failed with ADDON_STATUS_PERMANENT_FAILURE
  [JSONRPC] Add uniqueid to retrievable properties
  Enable storing of TVDB Episode ID.
  [aml] use new player caps to selectively hide/disable audio/subs menu items
  [aml] use new player caps to selectively hide/disable video menu items
  [aml] request features from player in bypass mode
  [aml] add ability for player to advertise its features
  [aml] add extended renderfeatures
dvdplayer: fails to play iso/img bluray files with non lowercase extension

fixes ticket: #13842
ffmpeg: added patch for supporting S_DVBSUB's in MKV as stored by tvheadend
Merge branch 'master' into master-dev

* master:
  ffmpeg: added patch for supporting S_DVBSUB's in MKV as stored by tvheadend
  dvdplayer: fails to play iso/img bluray files with non lowercase extension
Add a new directory "prebuilts", and put one prebuilt.
Misc mods
;; Temporarily commented out temporaries check
     ;; Causes method -make-next* of ReaderIterator in io/iterator.lsh
     ;; to fail with "number of temporaries mismatch : (9 0)"
webstat
empty~
Disable the Node backend by default.

Reported-by: Sebastian Probst Eide <sebastian.probst.eide@gmail.com>
First set of unit tests for SAMRecordUtils
Start to generate code for rules.

I chained the decision tree compiler and the Lua code generator to
generate code for rewrite rules. The code generated is currently utterly
wrong because of the mess of constructors applied to multiple arguments.
Generate less wrong code, WIP.
send a 301 if requesting a directory without trailing slash
check method of request against apropriate for protocol version
check for method and send 501 responses if method is not implemented; make use of convenience methods of request object
remove log files from repo and set them to the ignore list
minor changes
- add missing log directory
- make logging exception more verbose
object iv table can be NULL; close #66
Free iv of MRB_TT_DATA instance.
Merge pull request #338 from masamitsu-murase/modify_data_gc

Free iv of MRB_TT_DATA instance.
abort() if mrb->jmp is empty
Merge branch 'master' of github.com:mruby/mruby
added updated couchbase template
Fix problems with about dialog
Set open, save and save as… actions
Fix close menu option
Change app title when open a file
Filter file chooser by .pred extension and add modifications for title
Set new size
Add status bar with info
Update crawler.py

Zarez falio v.v
Example loop revisited
duuurrrr
Tiny fixes.
Merge branch 'master' of https://github.com/mydlp/mydlp
added mvc, security support to the web module
minor fix
undefined
SI-6685 fixes error handling in typedApply

When MissingClassTagError doesn't lead to an exception, but rather
silently sets an error, we need to bubble the resulting erroneous tree
up the responsibility chain instead of mindlessly typechecking this again.

This wasn't an issue before, because as far as I can guess the
aforementioned error setter was always throwing exceptions in the most
common usage scenarios (therefore the typecheck-again-fail-again
vicious loop wasn't triggered).
Merge pull request #1686 from scalamacros/ticket/6685

Ticket/6685
Fix for rangepos crasher.

wrapClassTagUnapply was generating an unpositioned tree
which would crash under -Yrangepos.  See SI-6338.
Fixing OSGi distribution.

There was some kind of wierd filesystem issue where ANT would overwrite
jars or not, depending on timestamps.  It was a non-repeatable failure.
Rather than overwrite JARs and rely on ANT, let's just spell out the
non-OSGI bundles.  While I had hoped to avoid hard-coding these,
it's probably best we've done so.
Merge pull request #1712 from jsuereth/fix/osgi-dist

Fixing OSGi distribution.
Merge pull request #1704 from retronym/ticket/6754-2

Fix for rangepos crasher.
Merge branch '2.10.0-wip' into topic-virt
Merge pull request #2 from naomik/master

add nsfw.js plugin
Added naomik to contributors
Added naomik to contributors
Fix contributions formatting
Fix author formatting
added example plugin
Adding RAGE Plugin to Dunn

Added Rage Plugin and added name to contributors in readme.txt
Updated syntax
spelling error
Merge pull request #3 from Emn1ty/master

.RAGE Plugin
plugin arch improvements
work-in-progress leader board css
key_commit: fix the mtgcode select all for grady
key_commit: Update warrants paid report
key_commit: Warrants Paid
key_commit: Added grand total to payments report
key_commit: update tr 5003 to add new comments field
fixed typo in setup script
added push and pop
Created JobReportSearcher to clean up duplicate code.

* Updated job report models.
* Updated specs.
- updated TVSeries Plugin to 3.3.0
PMD configuration.
[Add] Dailymotion Objective C SDK on version 1.8
misc minor refactoring and cleanup
Issue #250. Implement web socket close frame status code and reason text.
Merge pull request #254 from veebs/3-wc-close

Issue #250. Implement web socket close frame status code and reason text
[#740] Fix WebSocketClientHandshaker00.finishHandshake() validations
Fix compilation errors
Add UnsupportedMessageTypeException

- Replaced some IllegalArgumentExceptions with
  UnsupportedMessageTypeException
- MessageToMessage(Encoder|Decoder) should continue polling the
  inbound buffer if encode() or decode() returns null
  - aggregating codec can do that
invoke heavenly scent with targets
Update README.md. Tests added
Tests added
remove warning message when cloudy is not being run, force to use python 2.7
httpproxy - don't support chunked response
removing swf1 temp
fix: use correct outfile name generation routine
Fixed Eclipse's inconsistent file handling.
readline: Use one history item for reentered line

If the command entered is exactly the same as the last history item,
don't dupe it in the history
tls: make tls a little bit faster

Compile OpenSSL with inline assembly for big numbers
Forgotten commit: add arguments to handleGroup
no.  do check/clone in vimrc instead.  clean
Start working on router refactoring
Add server bindings cleaner
Add mounting config normalizer
Fix docblocks
Refactore router initialization
Explicitly specify protocol
Make sure all listeners are exactly ssl or not
Fix mount point normalization
Fix bindings config section name
Fix SSL config init
remove jruby from travis.
clean up after rbx.
finished 64-bit compiler support
lib/gcmd/concepts.rb

Added #collection method to build search-engine friendly/denormalized JSON data
Improved executables
[RBP] Correctly detect eglCreateImageKHR and eglDestroyImageKHR
[RBP-pvr] Fix to compile with PVR master
Adding support for floating point up/down casts (see issues #30, #33).
Add @function_bytecode
Update the AUTHORS file slightly.
Fix up the README to correct location of llvm-py
BUG: fix download link in setup.py (which is shown on PyPi).

Closes Trac ticket 2243.
Merge pull request #2707 from rgommers/ticket-2243-downloadlink

BUG: fix download link in setup.py (which is shown on PyPi).
BUG: native but not '=' byte order error in lapack

The check_object call in lapack_litemodule was checking if the passed
array was of byteorder '=' or '|', but this check failed for arrays of
specified native byte order ('<' on little-endian).
FIX: Use the NPY_TIME_T macro everywhere

Previously, two (critical) parts of the code used `time_t` instead of
`NPY_TIME_T`. Due to the fact, that most of the time `NPY_TIME_T` was equal to
`time_t`, this bug didn't show up. But in mingw, `NPY_TIME_T` is actually equal
to `__time64_t` and then this causes 64 bit integers to be cast into 32 bit
integers (thus becoming negative), which causes localtime() to fail in mingw.

Fixes gh-568.
Merge pull request #2857 from certik/backport2856

FIX: Use the NPY_TIME_T macro everywhere
Need a default for login_next.
Backport fixes
Member opts set to CVTL defaults, Volunteer tabs fixed to 1 row (for non-Admins at least)
Merge branch 'master' of git://github.com/flavour/ifrc
Updated full calander css and correct ux guide google appliance template to relate new global nav
Merge branch 'dev' of http://github.com/nyslabor/UX into dev
Fix GLUT include directory path handling
Fix Windows installation variant directory specification
Fix M_PI undefined on Windows by including the correct header
Global III binding on the bot's name.
packaging: add rhel specific packaging behaviour

Change-Id: I31c7311094f8d1cfdee5c80e468d9cda512b5990
Signed-off-by: Alon Bar-Lev <alonbl@redhat.com>
Add emacs ~ files to gitignore.
Update media path.
Move route building to Omeka_Record_AbstractRecord.

Fix #114
Added a promotion popover for shortenr owners.
content-descriptors tag description is added
- fixes to video engine
archive shaz
About now reflects l2ork version
post-experiment save
backported utf-8 support (may require further testing)
Fix various problems with the user timetrap implementation
Update documentation for R15B02 #3
[questions] answer Q2 by pmichaud++
comparison: latex template
comparison: latex template corrections
bug: comp works for lognorm, enh: join template file loads
bug: update graphics function
enh: adding brads logoffset
alterations for testing
CE edits including figures
2012_07_17
Changing beforeDispatch by beforeExecuteRoute in the component Acl
Fix bug #61468 ext/phar/tests/phar_oo_005.phpt fails
These need to be volatile in order to prevent leaking after the
longjmp in the error handler
Merge branch 'PHP-5.3' of git.php.net:php-src into PHP-5.3
News entry for png memleak fix
Merge branch 'PHP-5.3' into PHP-5.4
- Fixed bug #62384 (Attempting to invoke a Closure more than once causes segfaul)
Merge branch 'PHP-5.3' into PHP-5.4

* PHP-5.3:
  - Fixed bug #62384 (Attempting to invoke a Closure more than once causes segfaul)
Update download area script with version from y2
echo db server
Add composer.phar to ignore list.
Add Acme dummy app.
Add Leo bundle.
refs #3314 include PHPUnit and lots of php qa tools

git-svn-id: http://dev.piwik.org/svn/trunk@6765 59fd770c-687e-43c8-a1e3-f5a4ff64c105
refs #3314 apach2 is up and running as well. both use the same piwik directoy. apache.piwik listens on port 80

git-svn-id: http://dev.piwik.org/svn/trunk@6766 59fd770c-687e-43c8-a1e3-f5a4ff64c105
refs #3375 added language keys

git-svn-id: http://dev.piwik.org/svn/trunk@7342 59fd770c-687e-43c8-a1e3-f5a4ff64c105
* Display correctly in Visitor Log & real time widget, when visits to a page that has no URL set but a page title (the LEFT JOIN instead of INNER)
 * Also remove "0s"  from visitor log when there is only 1 action.

git-svn-id: http://dev.piwik.org/svn/trunk@7097 59fd770c-687e-43c8-a1e3-f5a4ff64c105
Clean up num_format.
scorer workflow work
[emacs/site]: ni-base.el, added agl-list-flatten function ; ni-file-cache.el, fixed file-cache-clean to take into account all folders associated with each file in the cache list ;
Finalized `fetchPDB` functions, and updated imports. See changes for details.
Updated fetch command.
Updated docstring.
Improved gunzip to handle string buffers.
Updated changes.
create a setting folder
move settings.py to settings/base.py
ignore local setting file
settings file for production and staging
Merge branch 'master' of github.com:prswb/prswb
Adds utility method to retrieve elements that are in the root element of the widget.
nadas 2
Show cluster groupings visually
Added a version of the dependence of extension.
Changed the error message when installing extension.
updated usage example to match what is in qiime_test_data
Merge pull request #339 from gregcaporaso/adjust_seq_orientation

updated usage example to match what is in qiime_test_data
Added pycogent_backports/alpha_diversity.py to incorporate the Gini index, Good's coverage, and the conditional_uncovered_probability.py stuff that was formerly in qiime/qiime. Added the test file as well. Modified All added files to remove redundant imports, a circular import that was causing an error, and changed the distribution of functions in the files to better reflect what each does.
Removed the files which have been incorporated into the backport or alpha_diversity.py
Modified files to update calls so that tests weren't failing.
More modifications to ensure that both scripts/conditional_unocovered_probability.py and scripts/alpha_diversity.py work as expected and each have the correct metrics.
Modified the documentation of alpha_diversity_metrics.rst to reflect additions.
Modified the documentation as suggested by Jens.
Merge pull request #523 from wdwvt1/alpha_diversity_changes

Alpha diversity changes
Updated, extract_seqs_by_sample_id usage examples
Merge branch 'master' of https://github.com/qiime/qiime into extract_seqs_by_sample_id

Conflicts:
	scripts/extract_seqs_by_sample_id.py
Merge pull request #385 from ElDeveloper/extract_seqs_by_sample_id

Updated, extract_seqs_by_sample_id usage examples
fixed template folder name in .pro file
django startproject does no like accents
Add an initializer to precompile a javascript asset...
Merge pull request #315 from knewter/fix-precompile-assets

Add an initializer to precompile a javascript asset...
Turn on parameter whitelisting and get specs to pass
[tests] Upgrade gems.  Fix deprecation warnings and some failing tests

- quickie regex to upgrade Factory(:foo) to FactoryGirl.create(:foo) everywhere.
- Perhaps with a devise upgrade, there were some tests in the posts request spec
  that started failing due to double-sign-in.  Fixed those.
require "rubygems" is obsolete in Ruby 1.9.3
Merge pull request #6303 from korny/remove-require-rubygems

require "rubygems" is obsolete in Ruby 1.9.3
Autoload ActionDispatch::Request::Session to avoid circular require.
Don't convert params if the request isn't HTML - fixes #5341
(cherry picked from commit d6bbd337ef1b96ed246bccaaf6e8b15a7077b9aa)
Remove exclude option from ActionDispatch::SSL
Fix secure cookies when there are more than one space before the secure
keyword
Merge pull request #5515 from rafaelfranca/remove-exclude

Remove exclude option from ActionDispatch::SSL and fix secure cookies
Fix tests about single quote escaping
solved the content-length bug
Make Lapack an optional dependency.  if not found, synapps is disabled.
Экспорт вынесен в отдельный поток. Добавлена генерация тестовых
данных.
layout: improve automatic resizing of disks.
tooltip implementation
Added RESULT_FETCHKEY to Closure responses
Merge branch 'master' into bootstrapped
Disabled maintainer mode for bootstrapped branch
Merge pull request #5 from takeda/bootstrapped

Bootstrapped
added 960gs files
custom css
fix issue with rake compatability on Ruby 1.9.2
Compiler fully bootstrapped!
ud footer style
Got the far call code to compile and link
Unbreak bootstrap dropdown, whoops.
Modified: SPHINX DOCUMENTATION.
Modified the documentation to pass tests.
add 'zh' to LANGUAGES
add: Chinese tutorial translation
change the format of contents
add: a missing link
add Chinese to the list of available languages
Minor edits.
Minor edits
Edits again.
fix a word
update the last modified time
update the link of a wiki page
More minor edits.
Merge pull request #1684 from Maihj/translate_zh

Translate zh: a new Chinese tutorial translation
Add Huijun Mai to the AUTHORS/aboutus. Welcome to SymPy!
Backticks added.
Update doc/README.rst
Update doc/Makefile

Use foreach instead of  a bash for loop, thus stopping on the first error.
tutorial: formatting only.
[bug 768457] Add e= back for CTR analysis

This re-adds the e= querystring parameter for CTR stuff between
bucketed search (e=es) and unified search (e=un).
Quick fix for Army of Awesome l10n replies.
Set up logging for auto_lock_old_questions cronjob

Otherwise it logs that it doesn't have a logger and that sends an
email when run by cron.
[bug 758783] /kb/new?title=foo should prepopulate the title (and slug) field
Ignore .suo files
Start hooking up a shiny new form that actually lets you choose serial ports. It even has some error handling!
Se modificaron estilos
Moved site specific stuff outside the server code
Электроника и техника -> Стиральные машины
Одежда, обувь, аксессуары -> Украшения, ювелирные изделия, бижутерия -> Бижутерия - уменьшаем значение в долларах
Редактирование объявлений - Недвижимость -> Вторичный рынок (Москва) - исправляем значение поля Общая площадь
Removed runtime reference call, updated README.
añadido botón eliminar articulo
Resources: NI components and Control Sys

Organized the Resources folder and added documentation for the NI cRIO
module 9870
Fixing an ugly error on notify_facts

FactExtrator maintained a reference to the f_locals self variable.

It causes a ultra strange behavior with erros unpredictable.

Now, It works on a system running django.
add links to ender bridge api docs
update finder plugin

- support using locate utility to find files
- support case insensitive searching
Merge branch 'master' of https://github.com/rxwen/myvim
Duplicate check and comparison is now based on sha512 checksum.
Added some validation.
...
Initial commit of basic MultiFit atomic fitting code; not yet completely
functional.


git-svn-id: https://svn.salilab.org/imp/trunk@15740 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Fix flags for static builds.


git-svn-id: https://svn.salilab.org/imp/trunk@15741 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Change into correct directory.


git-svn-id: https://svn.salilab.org/imp/trunk@15743 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Fix test name.


git-svn-id: https://svn.salilab.org/imp/trunk@15744 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Remove extraneous directory.


git-svn-id: https://svn.salilab.org/imp/trunk@15745 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Be more verbose when we fail to package something, to make it easier to figure
out what the problem is.


git-svn-id: https://svn.salilab.org/imp/trunk@15748 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Port build fixes from ed23e18.


git-svn-id: https://svn.salilab.org/imp/trunk@15750 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
On Windows, RMF DSO doesn't have a 'lib' prefix.


git-svn-id: https://svn.salilab.org/imp/trunk@15751 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Add library name paths where they are missing.


git-svn-id: https://svn.salilab.org/imp/trunk@15752 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
do a better job recreating the enviroment that scons dropped for cmake

git-svn-id: https://svn.salilab.org/imp/trunk@15753 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
update to head

git-svn-id: https://svn.salilab.org/imp/trunk@15754 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
sync to head

git-svn-id: https://svn.salilab.org/imp/trunk@15755 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
make sure frame is always explicitly set

git-svn-id: https://svn.salilab.org/imp/trunk@15756 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
update tests for multiple rmf backends

git-svn-id: https://svn.salilab.org/imp/trunk@15757 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
update to head

git-svn-id: https://svn.salilab.org/imp/trunk@15758 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
update to head

git-svn-id: https://svn.salilab.org/imp/trunk@15759 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
test all rmf formats

git-svn-id: https://svn.salilab.org/imp/trunk@15760 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
create keys lazily

git-svn-id: https://svn.salilab.org/imp/trunk@15761 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
load on frame 0 to get types right

git-svn-id: https://svn.salilab.org/imp/trunk@15762 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
add missing header

git-svn-id: https://svn.salilab.org/imp/trunk@15763 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
getPixelWeight added
Fixes #1548: Upgraded jQueryUI to 1.9.2
Merge remote-tracking branch 'origin/1548-upgrade-jqueryui' into 1548-upgrade-jqueryui
Adding of DMC, removement of bug in Slater determinant
Final bugs resolved
use nopt to parse command line options
add shebang to node2dm.js
add newline at the end of file
new line at end of file
Merge branch 'opt-parser'
add executable bit to node2dm.js
Merge branch 'master' into debian
debian changelog update
Removing the import of PHPUnit/Framework.php into all the test files.
SI-6567 Warning for Option(implicitView(foo))

I've seen the reported problem before in the wild. It seems
worthy of a special warning, so long as we advocate Option.apply
as an alternative to `if (x == null) Some(x) else None`.

It is behind -Xlint at the moment, an option that could do with
some promotion.
Merge pull request #1565 from retronym/ticket/6567

SI-6567 Warning for Option(implicitView(foo))
Bump version number for new nightlies.
Merge pull request #882 from jsuereth/fix/bump-version

Bump version number for new nightlies.
Finally did something about broken irrefutability.

The parser has always been confused about tuple patterns in
for comprehensions.  It thinks it can fail to recognize an
irrefutable pattern and have it removed in refchecks, but it
is sadly mistaken, because the unnecessary filter has a tendency
to fail the compile in typer.

Look more intently for irrefutable patterns and don't insert
the unnecessary filter.  Closes SI-5589, SI-1336.
Discovered filter was still being generated.

Rather than withFilter, for a subset of for comprehension structures.
Not sure if this was somewhat by design - only seems possible because
refchecks was only looking for nme.filter, not nme.withFilter, so
perhaps this was intended as some secret irrefutability backchannel?
Really have to document that sort of thing if it's intentional.  I
assumed it wasn't and unified everything.
Spiced up the irrefutability tests a bit.
Test cases closes SI-4574.

Looks like I got that irrefutability bug too.
Cleaned up Duration for the standard library.

 - Removed Timeout from the library. Each library should provide its own implementation of Timeout
 - Removed duration package object and replaced it with regular object
 - Removed usages of post Java 1.5 TimeUnit members
 - Added factory methods for FiniteDuration
 - Cleaned up some unnecessary comments

Review by @phaller
Merge remote-tracking branch 'vjovanov/duration-cleanup' into develop
rebuilt the starr after performance optimizations

for those who use locker as their main development platform
Merge pull request #1166 from scalamacros/topic/starr

rebuilt the starr after performance optimizations
Fix SI-5986.

Here we had an issue that RedBlack does not work the same way
for sets - which are not supposed to replace an element if
it is the same (wrt equals) and maps - which should replace
the corresponding values.

Adding an overwrite parameter which decides whether to overwrite
added keys if they are the same in the ordering.

Fix tests.
Merge pull request #786 from axel22/issue/5986-cherry

Fix SI-5986.
Dirty rectangles algorithm in tests.html
All this shit is broken
initial prototypal inheritance model
Got rid of unneeded objects.
Now using 'this', 'new' and calling super class constructors.
View has subviews.
Stage is prototypal. Kinda.
Stage flattens displayList for draw.
Matrix and View rotate in radians.
Stage packages clean view state after draw.
Rectangle can clip polygons, Stage has dirty rectangle redraw.
Global is trimmed down.
Moved Global.js to Animation.js
Updated Matrix documentation.
System wide documentation updates.
Updated documentation. Removed Pool.js.
Stage has step function and timer.
View sets Stage.shouldRedraw when dirty.
broken commit.
updated mod.
Updated modules to use new mod parameter passing.
Removed Note.
initial ease porting
Sync and async scheduling through Task.
Ease is a task.
DEP: deprecate scipy.io.save_as_module for the 0.11 release.  Also make it work.
- Changed caching behaviour
- Added support for caching operations with projections
- Added support for projections with relation composition (turns out to be pretty useless)
- Changed projection interface (now behaves like a list of bools, rather than a list of ints)
- Added an implementation of the Kanellakis/Smolka bisimulation algorithm to the tests
clarification for the process modell configuration
save model information to file
refactoring and label caption changes
Remove CMStats project

Change-Id: I1f19a2f26d9aa0a49d8eb56e6c08bb17148e429b
Switch the transport to http. It actually works. It is also Githubs preferred transport.

Change-Id: I56499a4566f6aa6d0769810711037e7b481f69af
switch to whatever protocol people init the repo with

Change-Id: If99f3f646a25918abeaccfaf29d63e6a73d6a827
Add p5-common repo since we can't do dependencies yet

Change-Id: I6e399ff863fc0172cd12f6f6b5c31f1d13611738
Add Torch repo

Change-Id: If4d0f844c34806ef24b13f33fe15ddb19d230928
Vendor not used anymore

Change-Id: Icab50a53c0d676296b6d8d1459ab13639d56561d
Merge branch 'ics' of git://github.com/CyanogenMod/android into ics
Fixed issue in Starter kit example number 4
Updated URL for bugs/issues
Caterina changes to support Micro.  includes newly rebuilt version of the bootloader merged with Blink produced using 1.0.2
Hack to include phrases from "platform.txt".

These phrases from "platform.txt" should be included in the "*.po" files.
  "Arduino AVR Boards"
  "Arduino ARM (32-bits) Boards"
This patch is a hack to do so.
See commit 9e25ad57db.
Merge pull request #1131 from sgk/ide15i18n

Hack to include phrases from "platform.txt".
Fixed boards.txt (added Micro and fixed path for LilyPadUSB bootloader)
Extended digital_pin_to_timer_PGM array in variants/leonardo/pins_arduino.h to include analog pins (fixed #1129)
Merge pull request #1132 from cmaglie/issue-1129

Extended digital_pin_to_timer_PGM array for leonardo variant. Fixes #1129
Added SimpleWebServerWiFi
Issue #9: Connection dies after a few seconds
Issue 1024: TCP connections die after few seconds of inactivity
Moving TXCO definition into HardwareSerial.cpp from HardwareSerial.h.

Otherwise, you get an error when compiling for processors with no serial port because the header file is always compiled.

See, for an example of the problem: https://github.com/damellis/attiny/issues/8
Clarifying comment.
Leonardo pins_arduino.h fixes (jrcutler)
fixes #915
Improved Leonardo bootloader

The power-on reset detection didn't work properly, but has now been
fixed
Saved old Leonardo and Micro production firmware.
Rebuilt firmware for Micro.
Added pre-loaded Blink to new firmwares.
Updated firmware for atmega8 for new avr-gcc versions.
fixes #153
fixes #1122
600 Baud comm. support, unsupported baudrate notification

- Added a 600 Baud line in DELAY_TABLE, for each CPU frequency.
(successfully tested for 16 MHz)

- begin(long speed) now returns a bool indicating if speed has been
found in DELAY_TABLE (if not, the method returns false immediately)
Reverted begin(long speed) to its original prototype (i.e.
returning void)
Merge pull request #1146 from sebastienjean/master

Enhancements in SoftwareSerial lib
fixed java 1.5 compatibility issue
moved unknown AutoFormat class to external folder
CAP Import stylesheet

How does one import polygons?
Set up
Basically just set up some stuff, a lot of debugging stuff and such. The
actual stuff doesn't work yet, though.
fodasse mais os pointers...
Add python2-pyaudio
Fixed statistic agent such that waittimes are now correct. The agent also ends by printing all vehicles waittime in stat.txt
Added link to title
dm cache: report metadata usage via STATUSTYPE_INFO response
+ tree and blob basename to filter the extension name.
solve exercise 14.1.1 ~ 14.1.6
Add: Final apk added
Merge branch 'development'
Merge pull request #78 from spond/master

More code refactors and a bug fixes
Merge pull request #11 from veg/master

Update my branch...
Added dirac-dms-add-files script, using same logic as dirac-dms-remove-files, to replace dirac-dms-add-file that uses the DIRAC API. Does not need the selection of the 'default' catalog, and can run on a text file containing many files
spray-json: provide selectDynamic for scala 2.10.x
spray-json: JsValue.as only requires JsonReader
spray-json: in monadic operations require explicit conversions

This is needed because with Scala 2.10 an expression

    for (name: String <- json)

is rewritten to

    json.withFilter {
      case x: String => true
      case _ => false
    }

Because there is no way to define an implicit conversion
which would automatically lift the PartialFunction to one with automatic
JsonReader support, we now have to rely on explicit conversions.

The new way to write the above expression is

    for (name <- json.toValidated[String])

which is only longer because `toValidated` is currently too verbose.
spray-json: don't automatically bring the json lenses implicits into scope

It's better to rely on using

   import JsonLenses._

because you will need this anyway to use the lenses. If you had both
`JsonLenses._` and `spray.json._` in scope the conversions wasn't
selected any more.
spray-json: make sure not to catch control flow exceptions in Validated
spray-json: use ClassTags instead of ClassManifest everywhereto quiet down warnings
Centralizing coupon code application + customer messaging logic
More specs for coupon messages. Changes to make specs pass.
Improved case insensitive coupon codes

Fixes #2176
pre fill the bill_address from previous order if any

Merges #1248
Adding Spree Products to Taxons

Fixes #1467
Start displaying the task board headers.
sty + toc + compilable
[feature] automatic sync
Reworked POM
moved onclick
Update .mailmap

It should now be completely up-to-date.
added FunctionMatrix object

This is the SparseMatrix equivalent in the MatExpr family
Edits for docstrings of FunctionMatrix
added test_args test for FunctionMatrix
Merge pull request #1337 from mrocklin/funcmatrix

Funcmatrix
Revert "3"

This reverts commit 7ada6ef74e25ac5b3d28e6e722587ac6b15eab10.
Fix model.r to show alternative *lags* between plus and minus strand reads.
README.rst  added.
rumgebastel array
Added deteting and keygen
Fixes for Windows
Update header
Update sProcess test for Windows
always run integration test,
show problem with nodatasets
show max velocity
Added tfgl/lights.py for easy lighting and tfgl/glcommon.py to hold common opengl routines. Shapes now have diffuse,ambient,specular,emission and shininess material properties. Should eventually move these into their own Material class.
added get_command_output
sha1sum is also supported
put back '\n' chars removed by input_line in get_command_output
added sha1sum verification support into get_tarball_chk
Merge pull request #47 from HappyCrow/crypto_sum_verif

Support SHA1 hash verification using sha1sum external program
First commit.

All background stuff are represented.
Except dark clouds.
Refactor

Made all literal numbers constant
Refactor

Made brown, yello bricks types enum
Refactor

Removed "paint", use individual paint for every task
Refactor

Created method: drawBackPillarAndShade
Refactor

Created method: drawPillar
Refactor

Created method: drawCloudAndShade
Refactor

Created method: generateRandomBrick
Refactor

Get screen width and height from DisplayMetrics.
Refactor

Force landscape when running
Refactor

Moved code out of run()
Removed BLOCK_SIDE_LENGTH, use BRICK_WIDHT and BRICK_HEIGHT
Refactor

Use "Drawing when Running" instead of draw scene after 3 screen
width have travelled.
Refactor

1. Moving bricks with background
2. Fix bug that clouds won't show
Refactor

1. Supporting auto-saving/retrieving background and other runtime info
	* save background(stage) in png file
	* save blockArray in text file
	* save variables in SharedPreferences
2. Fix trunk width and tree crown width problem, they were previously calculated by <Life> cover's HEIGHT.
3. Fix minor calculating problem in onTouchEvent, shift 'prevX' everytime shift screen
Change coordinate system to lower left corner, instead of upper left.
Long time no see.

1. Support multi-touch
2. Add pool
3. Use groundArray to represent ground
4. Add cone, dark cloud, rain, lightning
5. Now hero can be stopped by cone, pool and dark cloud
6. Show distance in top left corner
7. Add passport, umbrella, ducky
8. Add passport count, umbrella count, ducky count
9. Display those counts below distance
10. Add code to save/retrieve info that relate to those barriers and tool
11. Keep back pillar and pillar space constant
12. Keep lightning flashing. (Really cute)
13. Add "GAME OVER" screen
Some improvements

1. Can only draw bricks 2*BRICK_HEIGHT higher than ground
2. Added brickAvailableCount and springboardAvailableCount,
   temporarily show them after passport count
3. Support springboard on ground
4. Ajust hero movements during jumping
5. Now only provide tools(ducky, passport, umbrella) above brown brick
6. Increase available springboard count every 5 seconds.
7. Ignore previsou info if not all of them are available
8. Added coneCoolingSpace, which results in fewer cone
9. Won't show cone and pool in the first screen
Removed PillarPostion in LifeSurfaceView
Improving...

1. Corrected ground inconsistency problem
2. Won't show home screen if returnning from pause
3. Disabled drawing springboard above water
4. Reset prevY after finger released
5. Put ducky count and icon etc in a single RectF, made then button
Support rank !
Implemented commands shorthand

This patch makes the CommandManager accept partial
typed commands, e.g. /j for /join and such.

In case of Ambiguities, it will report to the user
with the message:

'a' is ambiguous: addadmin, addowner, afk, allow.
adding Crypt-Random-1.25
adding fcron-3.0.6
adding Test-ClassAPI-1.06
adding tkman-2.2
adding Crypt-Primes-0.50
adding squidGuard-1.4
Fix: add optimist and fix readme for npm install
サンプルhtmlをうｐ
update sample_data rake file
Add user microposts
ホーリー
Changes to DS v0.3
IR-sensor stuff.
Add Trema::Switch class
Implementing message body is more tricky
With a hook $GLOBALS['TL_HOOKS']['getForm'], i am setting jumpTo page ID dynamically like 

	// A Hook getForm function 
	public function getFormHook($objRow, $strBuffer)
	{
		$objRow->jumpTo = 128; //<- dynamic value
		$objElements = new Form($objRow);
		$strBuffer = $objElements->generate();
		return $strBuffer;		
	}


And inside From.php at about line 240

		// Get target URL
		if ($this->method == 'GET')
		{

			$objNextPage = $this->Database->prepare("SELECT id, alias FROM tl_page WHERE id=?")
										  ->limit(1)
										  ->execute(($this->objElement->jumpTo !='')? $this->objElement->jumpTo : $this->jumpTo);

			if ($objNextPage->numRows)
			{
				$this->Template->action = $this->generateFrontendUrl($objNextPage->fetchAssoc());
			}
		}
Fixed singleton class initializations
Minor type errors in event_dag.py
Refactor wasn't quite finished -- Replay() instantiated inside of MCSFinder
need simulation_cfg
* Debugging: call R_ReinitOpenglContext() by pressing Alt-Break
* Android: Fixed world not drawn on Android, I'll try to do a better fix later.
* Put a space between string literals and a following macro name.

Otherwise C++11 aware compilers interpret the macro name as custom suffix.
allows building the rack plugin without async support
improved (and stabilized) auto-snapshotting
prova shp
minor server list fixes
Pre-alpha warning fix
Not forwarding path as $_GET parameter to index.php

This would now make Opauth require mod_rewrite
more opcodes, rearrange
updates for sheneos test run
Improving support for combining NDEBUG with !BOOST_DISABLE_ASSERTS
Fixed #476: Extra spaces in docs before links to command line options
Removing mentioning of HPX_ENABLED from docs as this is just confusing.,
Fixed #480: Non-deterministic segmentation faults in AllGather example
Attempting to fix #489
Creating separate module for memory performance counters (fix #481)
Adding Windows memory performance counters (fix #483)
Adding docs for the memory performance counters
Fixing the help texts for the new counters
Fixing tables in performance counter docs
Renaming wait_all/wait_any/wait_n to when_all/when_any/when_n
Adding new wait_all/wait_any/wait_n  with different semantics
Minor tweaks for docs
Retrieving all counters requested on command line asynchronously in parallel (instead of sequentially)
Renamed new memory performance counters
Some documentation work
Fixing compilation errors (gcc)
Fixing performance counter which counts stack reuse
Collect stack-trace only if needed
Making sure future is kept alive even under the circumstance of exceptions
Improving stability of sheneos_test
Do lock checking only if logging is enabled
Merge branch 'master' of https://github.com/STEllAR-GROUP/hpx
Fetching from upstream
Big refactor of Munify project structure
Adds proper mime-type and user-agent to all requests
Fixed all the specs for article and comment. The function merge_with! now successfully merges the text of two articles, reassigns the second article's comments, and then destroys the second article
Meta testing.
Relacion Persona Alquiler
update web
fix web
JSONP fixed
!async
Improved docs & comments (and prepared for docco)
Renamed `hyte-server.js` to `server.js`
Better decoupling between server and module
sorting vars
emboldened and booleanated globals, ternary evaluations replace if statements for all logging.
Merge branch 'master' of https://github.com/wgoyer/Repo
added person decorotor to improve readability
added model logic to marks tasks as complete
Obey the @opts[:kill] option
Version := 0.0.5
Use the term `filter` consistently
Rename 'monocle.custom' to 'monocle.extend'
python/mysql: move test into source, other work
commit chp5
Upgrade to sbt 0.11.3, and working on GPG signature
toString of BED data
Fix BED output format
Rename methods
Fix CRLF(\r\n) to LF(\n)
Add "description" as attribute to the ggs object.

"description" is added to the series of attributes that the ggs object has. It
may be used for identifying models in, for the moment, the ggs_caterpillar()
function.
Minor change to ggs passing description attribute, avoiding a message if no
description is passed.
By default ggs passes the name of the source object to the attribute "description".
Delete a debug print statement.
ggs_caterpillar() accepts to pass the model description in the ggs object attributes.
Update NEWS file to prepare the package for version 0.3.
Delete a missing debug "print" statement.
get_family() forgot to pass the description attribute.
Minor change in the documentation.
Version submitted to CRAN for version 0.3.

Documentation files updated.
Adding archlinux article.
Updated backbone to 0.9.2 and underscore to 1.3.3
initial taskd as parameter
tasks in API passed as a task descriptor
task pausing
Mini Fußballspiel hinzugefügt.
Added "Kohana as a Library" tutorial.
Correct mime-type to application/javascript for js files [fixes #4496]
Added tests for Text::auto_link() with punctuation
Fixed bug #4208, Text::auto_link() issues with path in URL

This also includes unit tests to ensure correct behaviour
Changed Kohana_Log_Writer::$strace_level to LOG_DEBUG
Merge pull request #239 from acoulton/bug/javascript-mime-type

Set correct mime-type for js files, fixes #4496
Merge branch '3.2/develop' into 3.3/develop
Update the Route::__construct inline documentation
Merge pull request #267 from AlexC/strace-level-to-debug

Strace level to debug (fixes #4519)
Merge remote-tracking branch 'alex/bug-4208' into 3.2/develop

refs #4208
Merge branch '3.2/develop' into 3.3/develop

refs #4528
add tests to HTML class (3 of which fail) refs #4529
fix failing HTML tests, refs #4529
Merge pull request #272 from kohana/bugfix/html-bug-4529

Bugfix/html bug 4529

fixes #4529
Merge branch '3.2/develop' into 3.3/develop

fixes #4530

Conflicts:
	tests/kohana/HTMLTest.php
Merge pull request #170 from leth/docs/tutorial/library-kohana

Add "Kohana as a Library" tutorial
fix little grammar errors in new guide page (refs #4006)
Merge branch '3.1/develop' into 3.2/develop

refs #4531
Merge branch '3.2/develop' into 3.3/develop

refs #4532
updating validation guide to fix variable names refs #3869
TRAV-119 fixed group permissions
ajustes no layout da pagina principal
Merge branch 'master' of https://github.com/yaw/gwt_gae

Conflicts:
	war/Gwt_gae.html
add triangles and bugfix signal application
modified oled driver to receive messages
Make an argument of decodeRange auto ref
Changing CNAME to yiqingsim.com; adding source for post_url plugin
init commit
hbase cases
hbase cases
- Add generators for signalent.h and syscallent.h.
MCU open on powerup.
Put Windows libusb-1.0 and changed to interrupt transfer output from MCU. Didn't test it yet.
speed changes, still need right conversions
Fixed setsockopt.c to work with ZeroMQ/3.2.1
Merge pull request #88 from hintjens/master

Fixed zsockopts to work with ZeroMQ/3.2.1
Update src/docs/CHANGELOG
Merge pull request #536 from rgasch/patch-5

Update src/docs/CHANGELOG
Separate js files using extra semicolon to prevent corruption of the whole combination by one broken file (closes #446)
Auto-close option for zikula ui windows (closes #121)
Merge remote-tracking branch 'origin/1.3'
made list printer iterative, for the time being
changed doc.html to use new markup (code blocks are active Leisure, now)
Adding the subject of this project and the link to the blogpost
Date/Time stored as a long instead of a string
trying list length
- Club contest a caution
- Staff/Club comment on contested caution.
- Added club_id to Players.
- Disabled registration.
added_url_object
WHISTLE-1217: refactor whistle_service to draw from a services db
WHISTLE-42: handle the case when the key doesnt exist
WHISTLE-1217: WIP
WHISTLE-1217: populate item discounts
WHISTLE-42: consider 0.0 empty
WHISTLE-1217: WIP
WHISTLE-1217: WIP
WHISTLE-1217: clean up and start of the crawler
WHISTLE-1217: slight refactor
WHISTLE-1217: nearing the end
Merge branch 'WHISTLE-1217'
recognize number
Addded 'intersect2_Segments' from HW6 and addapted it to the existing data types : PlanePoint, PlaneSegment and PlaneVector.
Changing thread executions and creating a DummyStorageImpl
package iOS setup-splash: fix typos
Avoid already initialized constant ARGV.
Use supervisor_name.
testisin YChartsExcelScraper klassi, väiksed korrektuurid
Merge branch 'master' of github.com:AFFA/Project
refactoring and cleaning

Signed-off-by: gerbsen <dgerber@informatik.uni-leipzig.de>
add new file wizard, icons, bugfixes
Changed deployment and removed resource dependence
Added deployment and initial work on a Pageslider component
[22] Update Entity class to allow adding and querying for components
Removed synchronization from the mouse calls.
otras estandarizaciones
Koncern-IT: afønsk sex
Moved TabbedWindow to Dialog package
TabbedWindow size is specified in PopupWindowDimensions interface
Class Color Alpha set to Full
Fixed unset value in ReadLocalValue.
Removed the require onces as recommended by Zend for performance http://framework.zend.com/manual/1.12/en/performance.classloading.html#performance.classloading.striprequires.sed
little bit form - styling

Signed-off-by: Bruno Perner <b.perner@gmx.de>
first part for column-options-selector

Signed-off-by: Bruno Perner <b.perner@gmx.de>
add support of 'snapshotSize' and 'snapshotDescription' attributes in block device mapping
update spec