COMP: add set methods for member variables where missing.

This integrates a patch proposed on the Jira Ticket here:
https://itk.icts.uiowa.edu/jira/brows/ITK-2932

Change-Id: I9c7a35261c74a8e69213e678b343de473cea69fa
STYLE: Rename itkMultiTransformBase to itkMultiTransform.

In ITK convention, only classes with a naming conflict between the
base and non-base version have "Base" in their name.  For example,
Image and ImageBase.  Most ITK classes that are base classes do not
have base in their name.  Classes that are not base classes at the
time they are written may often become one in the future.

Change-Id: I9ca801e94d8779b5568b57372b6ded418162b7f4
COMP: Wrap MultiTransform.

Fixes wrapping errors with CompositeTransform.

Change-Id: I4432000c6634cc0d79e0c9ed3eafc152d5efd8fb
STYLE: Fix style in MultiTransform.

Remove itk:: inside itk namespace.

Use prefix ++ operator.

Change-Id: I24f9fd0b09b23b4865ea058b48bd0d66ff37f1ed
DOC: Modify BSplineDeformableTransform comments.

Author: andreas.schuh.84@gmail.com
Minor grammatical correction.

Change-Id: I3871d547ed29308f86cd5bf3a870a96d583fbea8
Merge topic 'MissingGetFunctions-2932'

d2c6cfc COMP: add set methods for member variables where missing.
Merge topic 'EditDoxygen_BSplineDeformableTransform_1354560732'

9ab1fe4 DOC: Modify BSplineDeformableTransform comments.
COMP: Fix link error with visibility-inlines-hidden

A virtual inline function, in HDF4::DataType was causing link errors
when compiled with visibility-inlines-hidden. The method has been
moved to the cpp file.

The follow is the error addressed:

/usr/bin/ld: CMakeFiles/ITKIOHDF5.dir/itkHDF5ImageIO.cxx.o: relocation
R_X86_64_PC32 against undefined symbol `H5::DataType::fromClass()
const' can not be used when making a shared object; recompile with
-fPIC
BUG: tracking changes (hopefully the last) in Teem prior to its 1.11 release

Change-Id: I71db413dab428f573e4f193f5a21f258efa23f65
Merge topic 'MultiTransformWrapping'

d22d572 STYLE: Fix style in MultiTransform.
53ba6c9 COMP: Wrap MultiTransform.
50d9047 STYLE: Rename itkMultiTransformBase to itkMultiTransform.
Merge topic 'NrrdIO-preTeem1.11'

cdff09e BUG: tracking changes (hopefully the last) in Teem prior to its 1.11 release
BUG: Cannot read a 2 channel (gray, alpha) png file correctly

Reading a 2 channel png (gray, alpha) into an Image<unsigned char, 2>
and write it out again, the result is a black image.

Added a regression test.

The converted pixel was not scaled properly.

See https://itk.icts.uiowa.edu/jira/browse/ITK-2982

Change-Id: I2f3983a7390a224b2ea3cdddb76099c3862851bf
Merge topic 'BUG_ITK-2982'

0bff1e3 BUG: Cannot read a 2 channel (gray, alpha) png file correctly
STYLE: Make CopyMeshToMesh a function just like the other Copy Container ones.

Change-Id: I1911dc36806530730ca8a8e5b618d310f503385f
Merge topic 'FixInlineLinkErrorHDF5'

d54f135 COMP: Fix link error with visibility-inlines-hidden
Merge topic 'CopyMeshToMesh'

00a3d49 STYLE: Make CopyMeshToMesh a function just like the other Copy Container ones.
COMP: Suppress fftw ExternalProject warnings.

Change-Id: I0702e85bc0ccce86e075b8ba9c0921a068e13a6c
COMP: LabelImageInterpolateImageFunctionTest type conversion.

For:

  ITK/Modules/Core/ImageFunction/test/itkLabelImageGaussianInterpolateImageFunctionTest.cxx:86:43: warning: narrowing conversion of 'x' from 'unsigned int' to 'itk::Index<2u>::IndexValueType {aka long int}' inside { } is ill-formed in C++11 [-Wnarrowing]

Change-Id: I24f1d11a79a869b122ecf1ba91d44a88f46c6761
BUG: ShrinkImageFilter marked as modified in SetShrinkFactor

When ShrinkImageFilter::SetShrinkFactor changes the ivar, then the
filter is now marked as being modified.

Change-Id: Id93833e3815bd247d90a9d63c99d881187922e69
COMP: Disabling the VideoStreamTest.

Until Xiaoxiao has a chance to see why it is failing on her
ubuntu desktop dashboard build.

Change-Id: I2def398f0fdfae0999ab9ceb8d2ca1dc94da9bd3