Mod Replaced Pdep Kinetics Trange, and adding
RMSE as diagnostic information

Adding RMSE of fit as diagnostic information to
comment for each CHEB

Modifying the Trange to 2000 to 500 K (hard coded)
so as to improve the fitting. Earlier it was using
Thigh and Tlow of CHEB
RMSE in PDepKinetics is now log10 base

In earlier commit rmse was gased on natural log
k values, now converting them to base 10 so its
easier to tell how off is the fit in order of
magnitude estimae
Updating ReplacePdepKinetics Module to do PLOG

The ReplacePdepKinetics now will convert CHEB to PLOG
The two options now are
1 ARH and Pressure of interest
2 PLOG

For now the pressure for the PLOG have been hardcoded
to 0.1,1,10,100 atm.

Other Minor Changes
1)Did not read the reactions in properly if line "REACTIONS"
had units attached with it, this is not the case now
2)The output filename was too crude, the new name gives
more information and generates a .inp file
CalculateReverseRateCoefiicients

Adding utility to calculate reverse rate coefficients from
chemkin file, for Arrhenius,Plog and CHEB reactions.

Tested against Currans software for
npropyl+O2=npropylOO
Curran REV / 1.4E+18 -1.226 33951
RMG REV / 3.09E+17 -1.025 33717

ipropyl+O2=ipropylOO
Curran REV / 5.11E+22 -2.3821 36374
RMG REV / 6.062E+22 -2.407 36398

Though the parameters are different, the actual rate values
are not that different
Merge branch 'master' of github.com:GreenGroup/RMG-Java
Merge branch 'master' of github.com:GreenGroup/RMG-Java
Merge branch 'master' of github.com:GreenGroup/RMG-Java
Merge branch 'master' of github.com:GreenGroup/RMG-Java
Merge branch 'master' of github.com:GreenGroup/RMG-Java
Merge branch 'master' of github.com:GreenGroup/RMG-Java
Updated make.bat to include specfun.f90 in fame compilation.

This is needed to get fame to compile on Windows.
added tool for merging RMG dictionaries using Chemkin-MFC species mapping file for merge
Fixed bug in FAME inverse Laplace transform method for n > 0.

There is a small possibility that, given an unlucky set of Arrhenius
parameters and barrier height, that the numerator in the ILT expression
for k(E) when n > 0 could have a negative value at the first reactive
energy grain.

Closes #247.
Merge branch 'master'
Added handling of n < 0 to FAME inverse Laplace transform method.

The implementation is not defined for negative temperature exponents.
When they occur, we simply move the T^n piece into the A factor (done
separately at each T). This is a crude but necessary approximation.
Better way of choosing direction to return k(T,P) values from FAME.

The previous approach tried to choose the direction with the larger
k(T,P) values. However, this might differ depending on the temperature,
and is certainly not simple to predict a priori. The new method uses the
ground-state energies of the reactants and products to decide, which is
much more straightforward.
Don't check T and P range if not defined.

The TMIN, TMAX, PMIN and PMAX are static variables belonging to the entire
class of PDepRateConstants, and are only defined if running with PDep on.
If running with PDep off, there are no validity limits, and yet we still
may want to evaluate PDepRateConstants coming from a seed mechanism or PRL.
In this case, we just skip (or always pass) the validity test.

Closes #242 and #253
More helpful error message when using a forbidden structure in a seed mechanism.

It now advises you to add it to a Thermo Library.
Remove a couple of unnecessary comments.
Added an advisory note to kinetics libraries documentation.

The advice is to add forbidden molecules to a primary thermodynamics library.
Along with the improved error message in 086c9a71d0dc64b9e00a64eeacf5c76053cded49 this closes #249