Creating trunk directory
[svn-inject] Applying Debian modifications to trunk
Preliminary package

I do not plan to upload this package before Lenny is released, but I am very
open to fast-track requests. Upstream has to be contacted to release the
sources of the PDF manual.
The patches were not necessary in the end.
We also have interest in velvet - tried to fix the watch file but failed.  I guess we have to ask upstream for help ....
Do not touch third-party/zlib-1.2.3 at all.  The patch for src/readSet.c might be a little bit rude and perhaps we should suggest a better #ifdef EXTERNAL_ZLIB magic to upstream instead of this.
It is "Uploader_s_" and bumped policy version.
Reverted Andreases patch, and added a velvet-example package.
-O2 is the default in Debian, and often -O3 does not make the program faster.
Unset OPT as DEB_BUILD_OPTIONS does the job (thanks to D. Leidert).
Do not use third-party/zlib stuff.  Patch should be suggested upstream.  Remark: The #ifdef (Windows) condition does not work because the inclulde path mentioned there does not exist.
Machine readable copyrigh
Polished copyright file, fixed minor errors; ready for upload.
Forgot to add README.source for Policy 3.8.0.
New upstream version.  Hopefully ftpmaster will be able to work down NEW queue soon ...
New version, use help2man to create man pages, moved third party contrib stuff to /usr/share/doc/velvet/examples to make it more visible for users.
Added missing quilt entry in debian/rules
New upstream release; minor trouble to autogenerate the manpages.

 * New upstream release correcting multiple bugs, changing the stats output,
   allowing optional scaffolding and multiple rounds of Pebble.
 * Added the programs velveth_de and velvetg_de to the package in /usr/bin,
   and the scripts shuffleSequences_fasta.pl and shuffleSequences_fastq.pl in
   /usr/share/velvet (debian/rules, debian/install).
 * Refreshed debian/copyright. 
 * Temporarly disabled the manpage generation of velvetg* because the --help
   option is not available (debian/rules).
New upstream release.

   - Small formatting change to error messages
   - K > 31 now possible
   - --help option corrected for velvetg
   - Acceleration of k-mer operations (comparable to 64bit int performance)
   - Fixed variable lengths
   - Reordered struct declaration for more efficent memory alignment
 * debian/rules:
   - Restored manpage generation for velvetg*.
   - Added forgotten CFLAGS for the colorspace building.
New upstream release and packaging polishing.

  * New upstream release.
  * Added bibliographic information in BibTeX format in debian/references.
  * debian/rules: touch zlib to avoid third-party zlib to be built.
  * Removed ‘debian/patches/20_external_zlib.patch’. Passing apropriate
    variables in debian/rules is enough to build dynamically on Debian's
    zlib.
  * Removed the quilt patch system (debian/control, debian/README.source
    debian/rules).
  * Incremented Standards-Version in debian/control to reflect conformance
    with Policy 3.8.2 (no changes needed).
  * Corrected the installation of files that were moved from the
    ‘third-party’ directory to the ‘contrib’ directory.
  * Experimentation on debian/copyright.