labofsahil/github-event-dataset-2012 huggingface dataset:
new files, testing deployment
update readme.md for testing purpose
Merge branch 'dev' of https://github.com/Canadensys/canadensys-explorer into dev
restoring original file
Site updated at 2012-05-01 20:18:05 UTC
Change some command and flag values, added a function to create a database
Provide better error messages if no config files are found.

This commit also prevents the configfile code from being successfully
initialized if no config files could be found.

Should also help with #111.
Adding symlink to Normalize CSS file
Implemented key listeners camera movement
Use smaller audio set for xoom
add CNAME dns
Fixed mouse class name
en_p15 061 graphics
en_w8a graphics q137
added overall cancel

to allow for the total cancellation of the event.
server passes
Add support for replicaset connections.
Add backwards compatibility with old settings.
Mongo does not like None set for replicaset.
might want to spell that correctly.
Updated docs for new additions.
Merge pull request #24 from brack3t/master

MongoDB Backend now supports Replicaset connections.
Moar gemfile
update readme with ccache hint
remove stiffness at the end in motion skeleton code
non-exsistent subdirectories removed. also, gitlive.
Better alignment output progress
- Get also process error messages
- Show testing time
- Better error messages
Updated example output in Readme
restructure to accommodate eclipse's no-nested-projects rule
fix migration-induced compile errors
feilsjekk
Response works, kinda
Merge branch 'jim' of github.com:Jim-Holmstroem/WhiskerTracking into jim
add flat side to gear
Correct travis filename
完成第七章(利用这正则表达式进行表单验证)
use KnpMenu to display current MenuItem's name
SecurityController fix / default twig fix
Fikset overskriften på kundeportalen.
ProfileEdit fixed, long load time bug added
Merge branch 'master' of git@github.com:Lenapuz/Systemutvikling2-HIKST.git
adapt references code to deal with new comment URL format
Almost Done.. Attempting to figure out Picture Box
Added DB CSV's

Might not go here, but this makes it really convenient for me.
Created Initial Track Model GUI

Empty UserControl...but at least it exists
Update README

seadog's project
added re-implementation of the TI tempdemo
licenses
Testing out Markdown.
add link to linkedin
commit of original text file
duplication
duplication detection didn't work right, so I'm going to start over
commit of original text file
add state to city locations
commit of original text file
duplication
copy original to show cross-file blame
Merge branch 'master' of github.com:MikeChristianson/pragmatic-git

Conflicts:
	contact.html
	original.txt
Removed README file, which should not be included in the site
Various improvements in the layout
Fixed conflict
revisione 0.0.1
Initial upload of catchers
Bump CAS version.

The LWRP changes recently committed break old usage pretty nicely, so I
think it's time for a major bump.
slight refactoring and fixing of documentview implementation
First metadata dropdown & populating from metropulse.
fixed search banner
制作sae发行版本
Changed to non-blocking receive that receives all messages currently in the queue
Decision to remove blocking functions means that thread-safety is back in
Upgrading version of wordpress
Mudando nome de arquvios e formatando informação de saida

Mudando nome de arquvios e formatando informação de saida
Auction Search in CustomerService

There was no difference betweeen an admin and customer search.
customer can only find auctions that are active. admins can find
auctions that are not deleted.
added new image to replace dribbble one.
minor changes in the Menu
Merge branch 'develop' into menu
began configuring the structure of the state scrapers
translated the german comments
added readme
Fix sec_mm libraries compile files and switch to inline kernel
Update readme
Merge branch 'master' of github.com:Slotos/rubycas-twitter-matcher
[IMP] Add is_locked and remove_lock methods
Update oracle article
Site updated at 2012-12-24 20:35:49 UTC
Touch for update
Misc Cleanups, etc.
Add Glacier values to Makefile
Add horror bar
part2 of BUSOC Config
add separate 2d and gpu oc configs
Add email to sourcery repo
Tweak
Bouncy Castle
Doberman Cop 2
Reservoir typos
here is my final version of project 5
here
Site updated at 2012-05-08 03:26:59 UTC
Site updated at 2012-07-28 13:41:13 UTC
Test
Revert "Test"

This reverts commit 0073ceca24a1d379adcdfd56e81584e4df51f8a2.
Revert "Testing blah"

This reverts commit cc96b93a138aa0560912d04927f58dd08a843d8c.
updated postgresql capistrano config
Added WiseExonSearch. Not yet tested.
To start filling up data on donkey, use Runner. Backup the data before running!
Good luck!
String.join doesn't exist
more info goodness

Signed-off-by: aaron backer <aaron.backer@gmail.com>
FIX: Replaced unconsistent word
shifted everything into spree namespace for 1.0 compatibility
adding user settings view
Fix constants
Remove stack trace, put the correct string
complete page redesign
before returnto rails3.1
Memory leaks, fixed hang on node resuming, better operation with xargs
adding sample folder
added in warning styles to cube.css
Fixed. Blog context.
Adds --days support to project-analyze-batch.
updated tests due to latest changes
restored to normal work flow
updated tests due to latest changes
added a factory to generate the slot converter objects
updated slot converters objects
updated template changer and completed its test
Fixed an issue where a PASS would not switch the move to the other player and the game would get stuck in a loop.
cleaned up hard tabs
Added readme
removing gradle build file since we dont need it for repo
Test this publishing
webkit: Fix incorrect values in tiles range calculation

When calculating the range for the tiles, left, top, right and bottom
values should be used. For baseContent, width and height can be used for
right and bottom since a PictureSet always starts from offset (0,0).
However for the viewport tile bounds, left and top could be non-zero.
Hence, the right and bottom values should be used in the calculation and
not the width and height.

CRs-Fixed: 357231

Change-Id: I77a3e7364dd25d91fdce8161aaf129ccbaa45cdc
(cherry picked from commit c4649911e6086704191b484b7bdef0a4a8f97c4c)
Merge branch 'ics_chocolate' of git://codeaurora.org/platform/external/webkit

Change-Id: Ib1d2656f3f174c010d5e47bd911e90c542f10b1c
updated entity list in collection
more work on syntax substitution system.
Merge branch 'master' of github.com:arjuncomar/csse304-interpreter
reshuffle the post-update foreman tasks
Initial getUserAffiliations reqeust
Moar WIP
finished up to 21.3, starting 21.4
* Implement self.close().

* Include MDN example in README.
cgroup: Moving cgroup helper code to autotest core libs

Deleted cgroup/cgroup_common.py and moved to cgroup library
modified cgroup.py to adopt the cgroup library changes.
This patchset address the below issue
https://github.com/autotest/autotest/issues/574

Signed-off-by: Satheesh Rajendran <sathnaga@linux.vnet.ibm.com>
Some classes are deleted
Sun Nov  4 12:38:18 HKT 2012
Search nav
Added font sliders.

Caching to FBO to that the performance is consistent.

Font changing working as well.
Updates README, removes TO-DO items to wiki
added 2 new buttons
Merge branch 'master' of github.com:bergstroem1/DBT---Coffeescreen
Fixed an error with the expire time
Fixed a problem with refreshing the client
Small UI change, added password
Merge branch 'master' of github.com:bergstroem1/DBT---Coffeescreen
update default to not use cache
Example mod update
Add opkg package with libcurl fixes
Yep, another late night push
Removed parent module.
forgot one style change in All_Samples
Merge pull request #95 from pelegri/gh-pages

One more fine-tuning of All_Samples
added two logo images
New theme: Nobel Prize Winners

December 10 is the day Nobel Prizes are awarded, so it may be
fitting to release this theme on December 11.

Since (AFAIK) you can't use a RemoteList for a theme that has
categories, nobel_prize.pm is generated by a script. And since
MultiList::init doesn't take arguments, the generated module
uses some hackery to populate the categories from the POD.
remove generating script for nobel_prize.pm
add an =encoding line
do not redefine Acme::MetaSyntactic::load_data

this was bound to break all themes loaded after this one
add many more categories

can now select by year, category, year/category and category/year
sort documentation by date / category
group by year
Nobel prizes for 2006
Nobel prizes for 2007
Nobel prizes for 2008
Nobel prizes for 2009
Nobel prizes for 2010
Nobel prizes for 2011
CHANGES for nobel_prize
Update Russian/main/TaskManager.apk/res/values-ru/strings.xml

скорректировал строку
Nitrogen53k: power-down tweaks

Prevent recursion
Only try to power down once per button push
Sample high for .1 seconds before setting was_high_sometime

Signed-off-by: Troy Kisky <troy.kisky@boundarydevices.com>
Removed some old js config code.
Changed the Bottle Size Function to display accurate measurements
LPS-31194 Remove unthrown exceptions
LPS-29170 Fix Bug in breadcrumbs
LPS-29170 Support for get movable models
LPS-29170 Support for get ContainerModels in DL TrashHandlers
LPS-29170 Add support for isRestorable in DL TrashHandlers
LPS-29170 Support for move DL entries in RecycleBin
LPS-29170 Change TrashEntry[] by List<ObjectValuePair>
LPS-29170 Support for move trash entries
LPS-29170 source formating
LPS-29170 Prepopulate list size, not necessary, but might as well since the code is already there
LPS-29170  Rename containerId to containerModelId, containerFolder* to containerModelFolder*
LPS-29170 Consolidate logic, and use var name xxxOVPs. Search for ObjectValuePair in *ServiceImpl.java.
LPS-31225
LPS-27895 Making logging for Xuggler and ImageMagick more consistent

Conflicts:
	portal-impl/src/com/liferay/portal/image/ImageMagickImpl.java
	portal-impl/src/com/liferay/portlet/documentlibrary/util/PDFProcessorImpl.java
LPS-27895 Remove obsolete log categories for ServletRequestUtil and ServletResponseUtil
LPS-27895 Add logging to Sharepoint servlets
LPS-27895 Source formatting
LPS-27897 SharepointServlet improperly handling spaces in folders
LPS-27897 Source formatting
LPS-30691 Only increment view counters on visible web content (i.e. not on drafts)
[TIMOB-8219] Fixed bug in focusable.
[TIMOB-8034] Code cleanup.
[TIMOB-8885] Code beefed up.
Properly escape ampersands (&) in posted JSON items

Previously, a "POST /<channel>/content/<node>" with a
JSON-formatted body containing an ampersand would lead
to incorrect results.
Update

Change-Id: I169856dae886e3a444fc8941774761b5a12c03e0
added initial version of UI module, tray icon setup
using new detour simplified routing.
Test with Puppet
Update matrix
Add manifest fixture
Avoid loading the lib twice
Rename conffiles as *.conf to make sure the Puppet test works
Test two facter version
Fix Gemfile
Puppet 3.0.0 requires Facter >= 1.6.11
Exclude Puppet 0.25 and 2.6 from Ruby 1.9
Move py executables to bin/

This makes tab completion when opening a module way easier.
Update make clean target
Removed files
Added files
CodeEval.com, Hard, Longest Common SubSeq Upd
gera enimigos so de um lado
player2 ja tem animacoes
player2 ja tem hitbox
onDisconnect termina o jogo
Fixed several connection bugs
[driver] When creating the compiler invocation out of command-line
arguments, force use of clang frontend for the driver.

Fixes rdar://11356765.
Make the changes in r165394 be conditional on post LLVM 3.1 changes.
[asan] make LargeOOBInMemset test resistant to clever compiler optimizations
PVS-Studio noticed that EmitVBR64 would perform undefined behaviour if the
number of bits was bigger than 32.  I checked every use of this function
that I could find and it looks like the maximum number of bits is 32, so I've
added an assertion checking this property, and a type cast to (hopefully) stop
PVS-Studio from warning about this in the future.
Move the IRBuilder unittest from Support to VMCore. This got missed in
the original move of IRBuilder.
Add a boring bit of boilerplate to start testing IRBuilder::CreateCondBr.

This is in anticipation of changing CreateCondBr and wanting to test
those changes.
Add support for attaching branch weight metadata directly from the IRBuilder.

Added a basic unit test for this with CreateCondBr. I didn't go all the
way and test the switch side as the boilerplate for setting up the
switch IRBuilder unit tests is a lot more. Fortunately, the two share
all the interesting code paths.
Add the `lto_codegen_set_export_dynamic' function.

This function sets the `_exportDynamic' ivar. When that's set, we export all
symbols (e.g. we don't run the internalize pass). This is equivalent to the
`--export-dynamic' linker flag in GNU land:

--export-dynamic
  When creating a dynamically linked executable, add all symbols to the dynamic
  symbol table. The dynamic symbol table is the set of symbols which are visible
  from dynamic objects at run time. If you do not use this option, the dynamic
  symbol table will normally contain only those symbols which are referenced by
  some dynamic object mentioned in the link. If you use dlopen to load a dynamic
  object which needs to refer back to the symbols defined by the program, rather
  than some other dynamic object, then you will probably need to use this option
  when linking the program itself.

The Darwin linker will support this via the `-export_dynamic' flag. We should
modify clang to support this via the `-rdynamic' flag.
Add compiler-rt support for Swift.
Documentation: add a section to prevent spurious test failures like the one
fixed in r171243.
Remove a instcombine transform that (no longer?) makes sense:
    // C - zext(bool) -> bool ? C - 1 : C
    if (ZExtInst *ZI = dyn_cast<ZExtInst>(Op1))
      if (ZI->getSrcTy()->isIntegerTy(1))
        return SelectInst::Create(ZI->getOperand(0), SubOne(C), C);

This ends up forming sext i1 instructions that codegen to terrible code. e.g.
int blah(_Bool x, _Bool y) {
  return (x - y) + 1;
}
=>
        movzbl  %dil, %eax
        movzbl  %sil, %ecx
        shll    $31, %ecx
        sarl    $31, %ecx
        leal    1(%rax,%rcx), %eax
        ret


Without the rule, llvm now generates:
        movzbl  %sil, %ecx
        movzbl  %dil, %eax
        incl    %eax
        subl    %ecx, %eax
        ret

It also helps with ARM (and pretty much any target that doesn't have a sext i1 :-).

The transformation was done as part of Eli's r75531. He has given the ok to
remove it.

rdar://11748024
Basic functionality is working.
Code is undocumented and lacks unit tests.
Site updated at 2012-10-14 11:37:30 UTC
edited Neptune time and format for filename
Make compatible with newest Sprout commit
Passing ATM problem
Site updated at 2012-05-05 04:14:25 UTC
audiosystem: support for samsungs isSeperatedStream()

Change-Id: I36d7f8317186294c4ab0ebb4392f6e166e4f08af
telephony: added support for samsungs realcall parameter needed for incall audio

Change-Id: I36bb3259b7844c4b26385694718391a032e1a016
GCC 4.7 now correctly implements the two-phase name lookup rules

Change-Id: Ib459331212c6576c16ce688972d989f21e9263e6
See: http://gcc.gnu.org/gcc-4.7/changes.html
Merge branch 'gingerbread' of http://github.com/CyanogenMod/android_frameworks_base into gingerbread
Adding Firefox vs ChromeDriver post
hint for hd quality
save and continue editing.
Merge branch 'master' of github.com:codigodaniel/tasks-application
index to
HW3-Part3
add french trnaslation
add gitignore
copy old blog
Making pull distance based on the size of the table it is within.
Merge pull request #1137 from OpenMDAO/dev

merge from dev for version 0.3
Merge branch 'master' of https://github.com/OpenMDAO/OpenMDAO-Framework into GUI
Works, and existing tests pass
Merge branch 'GUI' of github.com:Kenneth-T-Moore/OpenMDAO-Framework into GUI
Test not working yet
tutorial test passes
Merge pull request #1147 from Kenneth-T-Moore/GUI

Support for Paramter Groups
Merge branch 'release_docs' of git://github.com/crobinsonut/OpenMDAO-Framework into release_docs
fixing mac doc viewing issue
fixed issue with plugin docs
small change to make docs work for release
Merge pull request #2 from Kenneth-T-Moore/docs

One more change to Docs
Site updated at 2012-12-09 21:35:15 UTC
Move bullet computations into BulletSprite class
Modified the menu name, and fixed a typo regarding the menu ID
Added Javascript examples created for the Waterford Coderdojo childerens programming club 2012
Moved git-me-a-changelog script to the apps directory
Merge branch 'dev'
Deleting usefuldb-gem, as it is now stored in its own repository:
- https://github.com/davidkirwan/usefuldb-gem
Merge branch 'dev'
new file:   _posts/2012-03-21-Life-Style-Burning.md
Site updated at 2012-08-08 20:27:17 UTC
Refactored validate method to use crowbar_rest:validate.
Started adding in network list test.
Merge remote-tracking branch 'dellcloudedge/master'
Merge pull request #96 from cdearborn/pull-req-master-15910fec2425e14170e3b70ec3da3331817eb301

BDD work [2/2]
MinneCommit

you know what it is. nothing, that's what
Added settings class and databound to initial 2 settings.

Signed-off-by: Charles Morris <cmorris@outlook.com>
Refactored settings to separate library, moved initial load of settings to MainPano loaded event.
Bunch of updates to execution management for resume, added mutex for settings access.

Signed-off-by: Charles Morris <cmorris@outlook.com>
Merge pull request #11 from treffynnon/patch-1

Fix `createDesignDoc` to be `createDesignDocument`
Add RSS entries in 2.1 fashion and stripped out work on the HD URLs now done by the media finder
updated premake files for MinGW
cs253 mitx

ps7
adding homepage to gem
updated zipcode spice, reworked regex do to bug, reworked logic as well
Changed china_adventures route to simply china
modified the placemant of some comments
commit before branch to local result storage
Split MySQL queries into two steps: 1) collect *all* pvals for *all* datasets, then 2) calculate and insert FDR qvals.

Altered jobs spawner to either run enrichment analysis or fdr correction script (with 'fdr' option).
Minor optimizations of the results table schema- _id is for dataset+factor+subset+year+ontology,
_subset (unique) is for goid+_id. Stored as MD5 hashes.
fixed javascript animation for hovering
Removed netrw history file.
Added gitignore.
Plays an mp3 through a GUI.
Rework script header and some other info strings

Signed-off-by: Emeric Grange <emeric.grange@gmail.com>
Better printing of the file path when an error occurs

Signed-off-by: Emeric Grange <emeric.grange@gmail.com>
Mostly cosmetic cleanup

Signed-off-by: Emeric Grange <emeric.grange@gmail.com>
Added my.cnf location comment
Added commenting, updated profile
adding file rpc_list_client_datarules.py
improve Android.mk, add import/export for ssh keys
alterado layouts e mensagens
alterado layouts e mensagens estão padrão
alterado layouts e mensagens estão padrão
alterado alguns arquivos para ficar padrão
alterado arquivos para menu da home, foi alterado o nome dos menus e posto um tamanho fixo nas abas
alterado nada
tentei arrumar o title não deu certo, tá errado ainda
alterado o caminho dos arquivos por que não estava aparecendo as imagens, url estava errada
alterado url do header e footer, estava errado
Adicionado tip no pom.xml para definir server padrao
alterados, layouts
http demo
fix the bug of noascii word both http and database
Fixes #17 - Refactor callbacks function
Set correct Spring Project repositories.
* According to https://github.com/SpringSource/spring-framework/wiki/SpringSource-repository-FAQ
Set build version to 1.0.0.M1.BUILD-SNAPSHOT.
Updated files to ignore.
added notes on version 1.3
Merge branch 'master' of https://github.com/fracpete/uservalidationbyadmin
Route in json
Merge branch 'master' of github.com:frankieroberto/scenic-railways
use a flint conversion function
add test of sdk
Adjust margin size
A test for #90 - getExpression processing
CLONE 2 VIA ECLIPSE
Deleted index page in anticipation of using github pages.
Trial class to see if I can get GIT working
Site updated at 2012-12-05 14:11:07 UTC
Searchform done.
Fixing merge again bah! - All done
added comments, adjusted logging
Start tracking to do items
Remove "hello world" first post (again)
Add some comments and useful info for understanding the challenge.
Já pode inserir colaboradores
bla
working
mute and volume function add.
add mute and volume function.
volume_button code modify.
春キャベツと豚の生姜焼き、をつくった
Site updated at 2012-03-12 06:17:40 UTC
kernel build correction

Change-Id: I5ccd70666262057e8f8ce7446a89678aa30bc781
hidden message tray
Only show caps lock state
Geting working window options
Added some extensions
Perbaikan Artikel
Added unittests to openAllinputs and cleaned up part of the code.
Added assert statement for comparing dicts.
Implemented getTexworksLines
Moved definition of assert functions to dedicated file.
Foolling around with relative paths for generating correct location of root files.
Added verbatim environment.
Make file name completion in paths with spaces under linux.
Change iso_src to ftp.iij.ad.jp, since mirrorservice.org sometimes fails.
Change memory size to 512MB.
Stop installing puppet.
Keep epel installed (Don't remove epel during cleanup).
Install latest rubygems from source instead of using yum.
Install chef-solo instead of chef.
Set timezone to Asia/Tokyo
Change gid/uid of veewee and vagrant, since I would like to use 500 for
another account later.
Install epel using rpm at iij.ad.jp instead of creating repo file to avoid
network failures
Put vagrant public key in /root/.ssh/authorized_keys for "vagrant up" to work
fine.
Merge branch 'master' of github.com:cdavid/drupal_planetary
Added README with installation instructions for Planetary
Merge pull request #3 from holtzermann17/develop

Added README with installation instructions for Planetary
Fix for space eating
fixed URL of daemon
Merge pull request #4 from holtzermann17/hotfix-rendering

Fix for space eating
making sTeX the default mode see ticket http://trac.mathweb.org/planetary/ticket/399
Merge branch 'develop' of github.com:jucovschi/drupal_planetary into develop
Making editor have a stable width
Updating drutexml to send correct preamble
deleting dd
Merge branch 'develop' of git://github.com/cdavid/drupal_planetary
reenabling caching
adding advanced books module
Merge branch 'master' of github.com:jucovschi/drupal_planetary into develop
partial update -- 75%
done with TNTBase interface
done with tntbase interface
almost done with TNTBase UI
done with TNTBase API + UI. Switching to import module
Renaming specialized migration modules
Adding a rough draft of my planetmath profile
This module which I think is by Alex got left out before
VI Improved
Vim etc
Add current user
Site updated at 2012-09-29 06:02:30 UTC
Sending simple configuration to PathAgents
finished several discount tests
use aosp phone
splitting melange into the two projects; introducing x86_64 build
Update deps + test custom method in Spring data JPA repo
Changed visibility of _return_type() method

Changed visibility of _return_type() method from "private" to "protected".
This will allow child classes to utilize the _return_type() method.
Couple fixes for how volume_dirs is utilized.
Merge branch 'master' of github.com:infochimps-labs/ironfan-pantry
hadoop bootstrap script kills all services, not just namenode
Updating nfs cookbook for CentOS
More fixes on zabbix chef_gem
removing stuff from pig that tries to install sun jasva
merging
removing references to sun java from piggybank
added log4j properties template for consistent logging
added log4j properties template for consistent logging
added ulimit setting for master and agent processes
Merge branch 'ulimit'
Merge branch 'master' of github.com:infochimps-labs/ironfan-pantry
Making zabbix restart correctly on ubuntu
Sensible defaults for user and group, added a create statement for the daemon_user's home directory
Making nodejs depend on build-essential cookbook (instead of ubuntu-specific package)
Cleaning up mongodb daemon_user invocation, attributes
Merge pull request #8 from infochimps-labs/infomart

jruby bump
allowed multiple, single masters
allowed multiple, single masters
data_search instead of search
- fed more tweet info to thermal printer
Added options for soft scoring
- output files changes. Now scores are printed as *.hard_scores.txt and *.soft_scores.txt

TODO:
 * write script to get number of sequences for each ancestor taxon. This will to get the information from the NCBI BD files directly and be read and parse on the fly potentially.
* the best p-values at each stratum needs to be corrected by the number of sequences that are on that stratum.

Signed-off-by: Inti Pedroso <intipedroso@gmail.com>
Minor change

Signed-off-by: Inti Pedroso <intipedroso@gmail.com>
first version script to get sequence count on sequence databases.
fix problem with information of par align output
- paralign output does not provide sequences without hits and does not provide the size of the sequences.
- a new option -seq added to provide the input sequences of the blast search to obtain the size of the sequences and those without hits

Signed-off-by: Inti Pedroso <intipedroso@gmail.com>
Soft-threshold
- added calculation of soft thresholds
- documentation also updated.

Signed-off-by: Inti Pedroso <intipedroso@gmail.com>
Merge branch 'feature/Soft_scoring' into dev
added routing to calculate BLOSUM62 score of a amino acid sequence against itself

Signed-off-by: Inti Pedroso <intipedroso@gmail.com>
self score sequences not on db
- using a input file with sequences the program now calculates the score of self-alignment and adds those results to the query specie phylostratum. In this way we make sure that all sequences are at least scored on the query specie phylostratum.

Signed-off-by: Inti Pedroso <intipedroso@gmail.com>
Merge branch 'feature/issue_with_orphans_not_on_db' into dev
Minor changes
Merge branch 'feature/get_number_of_seq_by_taxon' of github.com:inti/Compara-Phylostratigraphy into dev
sort out output files names

Signed-off-by: Inti Pedroso <intipedroso@gmail.com>
Minor changes
- corrected error that was calculating sefl-score when -seq option was not provided

Signed-off-by: Inti Pedroso <intipedroso@gmail.com>
added option to run bootstrap

Signed-off-by: Inti Pedroso <intipedroso@gmail.com>
sub-routine to get a random samples won number from 0 to $max_int with replace and without replacement.

Signed-off-by: Inti Pedroso <intipedroso@gmail.com>
tidy up of calculation of score matrixes
- this will help in calculating bootstrap values

Signed-off-by: Inti Pedroso <intipedroso@gmail.com>
Merge branch 'dev' into feature/bootstrap
Major changes
- added function to calculate quantile values. This function replicates the R function and it was obtained from here http://mailman.jach.hawaii.edu/pipermail/perldl/attachments/20100223/8dcde5e8/attachment.obj
- minor correction to function to get random set of numbers

Signed-off-by: Inti Pedroso <intipedroso@gmail.com>
added calculation of bootstrap values

Signed-off-by: Inti Pedroso <intipedroso@gmail.com>
added documentation and a example

Signed-off-by: Inti Pedroso <intipedroso@gmail.com>
Fix some bug and fixes some lazyload issue
Add logic for 'category' filtering and add view for the content_type top filters
Finally remove Application.js monster view. Finish globbal separation of UI elements in own view; although there's still improvement to bring
Allow cluster to contain the chkconfig stuff
Preparing release 0.0.11
Back to development: 0.0.12
Added stuff that no one will ever read to Readme
add post
smartypants
add link
spin.min is actually spin
Fix Type names. Removed "Minecraft" from types, since the package is already namespaced. Added a new test for seeing if pointers referenced within structures work. Then work to getting it to work or workaround.

Signed-off-by: Jacob Santos <jacobsantos@jacobsantos.com>
These should have been broken into separate commits, but whatever:
* Removed "Minecraft" from types.
* Added Message type to build a list of types for reading and processing.
* Added Metadata Item to store specialized Metadata processing. Uses Message type.
* Begin refactoring Metadata type. Many commits coming in case of revert needed.

Signed-off-by: Jacob Santos <jacobsantos@jacobsantos.com>
Remove assign since Set() method on MetadataItem does this task now.

Signed-off-by: Jacob Santos <jacobsantos@jacobsantos.com>
Refactor Metadata type using Message.

Much cleaner and hopefully fixing bugs will be easier. Hasn't been tested, prototype code for now.

Signed-off-by: Jacob Santos <jacobsantos@jacobsantos.com>
* Correct new type for Get() method of Metadata Type.
* We only accept Typer interface now. Remove the BS. If you want to set, convert and then set.

Signed-off-by: Jacob Santos <jacobsantos@jacobsantos.com>
Have to make Typer container in Message public and exported for some devilery. Also, fix bug in loop, must be int.

Signed-off-by: Jacob Santos <jacobsantos@jacobsantos.com>
Remove unsupported types.

Signed-off-by: Jacob Santos <jacobsantos@jacobsantos.com>
Add better bytesBuffer implementation. Maybe. Needs testing, but this code should function with less problems.

Signed-off-by: Jacob Santos <jacobsantos@jacobsantos.com>
Shortcut for MetadataItem type. We already have all of the information. We simply need to add the bytes.
* Includes adding a named return parameter for err.

Signed-off-by: Jacob Santos <jacobsantos@jacobsantos.com>
Add shortcut for Message type. This will involve a lot of code that makes it not worth allowing for Message, but whatever. Allowing it might be useful and the library should do the complicated shit, not the user. Well, as much as possible.

Also switches the manual variables for creating a custom MetadataItem.

Signed-off-by: Jacob Santos <jacobsantos@jacobsantos.com>
Sigh, much cleaner code:
* Moves append code for raw data to its own method. The helper method Set() deals with different types. Append() is a new method that only accepts MetadataItem.
* Moves optimizations to one method.
* Helper Set() implements and accepts Message type, for use with Slot and Int3 types.
* Remove unused methods.

Signed-off-by: Jacob Santos <jacobsantos@jacobsantos.com>
LOL, not OR, bitwise OR
* Refactor Message after finding that Set does in fact store original value.
* Fix many type conversion errors. Luckily, now that I know what the problem is, I should be able to prevent making this same mistake.

Everything appears to be working, the tests pass. Doesn't mean everything does work, just appears to work. Going to go back to working on Packets.

Signed-off-by: Jacob Santos <jacobsantos@jacobsantos.com>
Use revcomp.java-3.java as the Java program to run
added tests for city queries
removed xml responses
Added another paragraph to stormer kitchens page
added superfish feature
Model 수정
move directory and files
22 05 2012
코멘트가 없는 테이블을 선택할 경우 발생하는 assertion fail...오류 수정.
Created a README file

Using the markdown language I created a readme file that works with
github
Add jsfiddle link to readme.
example for https://github.com/alexruiz/fest-assert-2.x/issues/104
Removed permissions for SNP and ProbeSet for anonymous so they are hidden
Added plugin that links from trait annotations to plotting plugin
Added 'link back to plot' plugin for Gene, Probe and Measurement, updated wording, put back Overview
Added a link to my resume stored in Dropbox; minor textual edits.
Adjusted the design so that it looks better 320px wide.
Adding viewport meta for appropriate rendering on mobile and media query to fix width and center text on large screens.
Uhhh... start over.
Remove Compass H5bp.
Move JS lib files.
Enable line comments for compiled CSS.
Remove normalize.css
Remove _mobile and _print Sass files.
Update jQuery.
Remove Microsoft CDN Moderniz.
Update Modernizr.
english translation and refactoring
title + description changes
SurfaceFlinger: Let HWC handle an alpha blending
                when either C2D or DYN is set

Before we only use GPU to blend an alpha value.
However C2D can also handle the alpha blending,
when the composition type is set to either C2D or DYN,
use HWC to handle this.
And set the alpha value of C2D to HWC_BLENDING_PREMULT,
so later C2D can set alpha blending parameter.

Change-Id: I53be1d4219fbf2467a6391276d59213858a50058
Framework: Lock screen weather (Part 2 of 2)

This commit adds the framework side support for displaying the
current weather forecast on the lock screen.

Special thanks to Devatwork for his help with the update code,
Blunden for his help with the weather images and the AOKP team
for the original Yahoo! Weather parsing code.

Patch set 2  - Whitespace cleanup
Patch set 3  - Default show location, timestamp and metric to on
Patch set 4  - Adds AOKP copyright to util classes
Patch set 5  - Fixes derp introduced by Ps4
Patch set 6  - Fixes (incl music control widget size)
Patch set 7  - Minor tweak to the music control widget size
Patch set 8  - Better 'error' message on startup
Patch set 9  - Even better start up message and Cid image
Patch set 10 - German translation

Change-Id: Ib12951f163d4fe04cbfa2e4ae9fc59058b71f47e
Merge "SurfaceFlinger: Let HWC handle an alpha blending                 when either C2D or DYN is set" into ics
surfaceflinger: call perform function with custom events to HAL

- SF will call perform with event and value to inform HALS about
  custom events(external display, orientation change etc.,)
- remove actionsafe related functions.

CRs-Fixed: 341947
(cherry picked from commit ca1e7b9ee353bc4d2fdc2234d8860e84bbff74f1)

Change-Id: Icfe5f2f8ce56561c6959e206771b2850a3597e70
Merge "Framework: Lock screen weather (Part 2 of 2)" into ics
Keyguard: Turn lock-before-unlock into a user-configurable setting

Showing the unsecured lock screen (Slider/widget screen) before the
security screen is now a secure Setting (still defaulting to off)

Change-Id: I0a11f82ffe074d289129b2b972ffc0135eea81ed
Merge branch 'ics' of git://github.com/CyanogenMod/android_frameworks_base into ics
renamed shared to refinery in views and members_helper
use Page#content_for
renamed more paths from shared to refinery
添加“for 循环为何可恨？”
Reset percentWidth when setting new width instead of the percentHeight.
Fix the handling of Windows file separators

Use the quoteReplacement method to return  literal character
reperesentation of the file separator for any operating system.
Added missing import

Added the import for the java regex Matcher object.
Merge pull request #89 from joemccall86/master

Fix for issue #77
Took out a stray comment
Added framework for overriding user_login_block theme. Changed colour of navigation bar
update
add XNA sample
bumped minor version to 0.2.3
Renabled selecting active boot partition from cconfig
#15: visual decoration for drawn-under nav panel
Modules added: total_control user_dashboard
Add an example of an unscoped list.
Add TP3 (empty).  clean up TP2
Made template path more generic
Generated asset.
Update geometry to 320x240 as used by libretro.
Provide proper values for travis image
Lisää pääsykoetehtäviä (AMK)
Merge branch 'master' of github.com:linjaaho/oppikirjamaraton-maa1

Conflicts:
	sisalto/05-loppuosa/03-paasykoe-tehtavia.tex
增加manytabs预览图。
v2
v2.1
changed the version info
finalized v2.1.0
Started to fix bugs
Prepared for release 6.2.4.1

Updated the changelog and version number. This is a bugfix release to allow
building on Mac OS 10.8 with Python.org 3.3.
fixed a bug in menu inheritance whereby if an ancestor hadn't been explicitly set to <INHERIT>, such as if the page had been created before any menu had been made, then any children wouldn't search higher in the hierarchy.
made css image paths realtive to css file.
Removed unused bootstrap scripts
Fixed bootstrap CSS link
Removed non-existing javascript files
Added list of all blog posts
Configured post link style
Added navigation links to navbar
Added script to mark the nav link for the current page as active
Add page header to page template
Moved post list generation into include for future use in tags
Added list of tags
Removed separator in navbar
First post about the relaunch
Use customized version of boostrap
Add required Orion Eclipse script.

Move location of Orion Eclipse plugin scripts.
Auto Sync - Sun Oct 28 09:58:51 PDT 2012
Auto Sync - Thu Oct 25 22:51:31 PDT 2012
Auto Sync - Thu Oct 25 23:21:31 PDT 2012
Auto Sync - Thu Oct 25 23:51:31 PDT 2012
Auto Sync - Fri Oct 26 00:21:31 PDT 2012
Auto Sync - Fri Oct 26 00:51:31 PDT 2012
Auto Sync - Fri Oct 26 01:21:31 PDT 2012
error de acceso
update 64bit_issues.xml
d->c
This version will work on all current Moodle 2.x releases, reducing the version required so that only one branch will be present in the github repository.
Adding licensing information that should be included in each Moodle file.
added example file NonRationalPoint.g
increased assertion levels by two to comply with the new GAPDoc testing methods
Added initial working cli script
Bye PermGen
alpha state and some docs
Enable autocompletion options for ruby files
Enable omnicomplete only for filetypes if they don't already have
Updated metadata
Merge branch 'master' of github.com:mcintyre321/SimpleScriptRunner

Conflicts:
	SimpleScriptRunner/Properties/AssemblyInfo.cs
p11e アンケ9個 ソース整理中
p11Φ
twitter fix
updated readme
updated readme
markdown for readme
Some changes to LocaleFilter
Renamed bst.
Tree ancestor.
Distinguish a real common ancestor from node not found.
Added pry, make_aliases, vim-endwise. Updated configs, offlineimap
Artifact updated
Add checkbox option to include password hash
Added tweenmax
Added hover state to play btn
date added to newest posts
Erb and Haml support, natural filename ordering
Revert Old Version
Modified tmem benchmark
[BUGFIX] Fixed InlineHelper Behavior and styling
[FEATURE] Uses Label annotation in Form again
[BUGFIX] get the class through ReflectionService to avoid proxied classnames
[BUGFIX] changed non existing getQueryByType function into createQueryForType
[TASK] Added User administration
Fixing undefined singleton_instance
Port webrtc workaround to aurora for Calendar

--HG--
extra : rebase_source : ea20f0f626d60642633175deb4825ebcdd814a59
fix typo
Merge branch 'master' of github.com:ipa-fmw/cob_robots
add empty light.yaml for cbo3-4 to fulffill tests
Merge branch 'master' of github.com:ipa-fmw/cob_robots
new torso calibration
Merge branch 'master' of github.com:ipa320/cob_robots
stop for base working
Merge remote branch 'origin-ipa320/master' into automerge
shareButtons
Change gunicorn.conf to use command line options instead of config file
Fix fabfile to setup and start gunicorn correctly
removed some random "r" char that caused SyntaxError
Merge pull request #4 from Raz0r/patch-1

removed some random "r" char that caused SyntaxError
Update for rename of end to tuple in lop
Use sequence map in callRule
inicjalne ustawienie srodowiska
HW BDD features updates
# Updated hello world post
commit 19 november
Added more formattedDate tests
Initial working version of sockjs-node.vertx
Initial commit of empty Java 1.7 project.
need to create files to copy over /tasks/init/root
Use context.getRNG instead of world.mainRNG. Fixes #7.
RPC: Dissect AUTH_GLUSTERFS as used in GlusterFS-3.3

Inlcude the upstream patches from the following revisions:
- 42572
- 42573
- 42575

Upstream-bug: https://bugs.wireshark.org/bugzilla/show_bug.cgi?id=7244

Signed-off-by: Niels de Vos <ndevos@redhat.com>
(cherry picked from commit f4b4b53ebfd11632e316719f6ca6ad0bb2b6e6db)
Correct some idention and spaces vs tabs issues

Signed-off-by: Niels de Vos <ndevos@redhat.com>
Enable both GlusterFS V310 and V330 protocols

Signed-off-by: Niels de Vos <ndevos@redhat.com>
Fix some compiler warnings

Signed-off-by: Niels de Vos <ndevos@redhat.com>
Site updated at 2012-09-28 13:30:51 UTC
Initial commit of the actual MongoDBServiceProvider lib
NXP-10221 - Add missing SDK properties
a new post published: true.
corrected and and or
Merge branch 'master' of https://github.com/pankajksharma/Py-DltAssignment
Постраничный вывод на главной странице
1. update apply template rule
2. use xstproc convert man-xml to html
update manpage
update manual page
fixing build.prop issues
Added code to zip and scp file
fixed merge conflict
added email page, test and interface, and also small fix in texttest
Merge pull request #104 from payalpatel11/master

AutoTester 205: ET testcase# 152: Verify campaigns tab. Check display only
Merge pull request #103 from aplotitsa/master

Classes for ZIP and SCP f
Deleted commented out lines for repositories
Merge pull request #106 from aplotitsa/master

Deleted commented out lines for repositories
Merge pull request #105 from anshika-qa/master

AutoTester-170 ,206
Upload Image from center of the Campaigns' page.
Modified Message.cs
Initial commit of grender re-org
Ignore _site
grender re-org continues
Unify templates
Couple years' blog history
Finish post about Tincr and Dev tools
locking b/t pages + improve gmaps import.

gmaps import now grabs markers' locations rather than just the map's center point.
Octopress init
Site updated at 2012-08-01 05:05:25 UTC
basic 2.3 compatibility
read me
Initial commit of authentication libraries. IN-6
Initial commit replacing current authentication scheme with modular authentication. IN-6
Autoload libraries in /lib IN-6
Fixed syntax errors in engines. IN-6
Added tests for authentication_engine. IN-6
If the engine that was used was the ichain engine and there was no user found, the create a user. IN-6
Added attr_accessor for authentication engines. Authenticate method will set this if a user is found. IN-6
Extracted code for retrieving authorization from HTTP Header to lib file. IN-6
Including HttpHeader module. IN-6
Extracted random password creation to model file. IN-6
Now using password generation from model. IN-6
Initial work moving authentication pieces for LDAP into LdapEngine. IN-6
Using the auth_engine's user login instead of proxy user. IN-6
Cleaned up code for HTTP Basic engine. IN-6
Whitespace change. Logging happens before return in iChain engine. IN-6
Added conditionals to application_controller to handle return from LDAP authentication engine. IN-6
Added class method, create_from_ldap_info to extract user creation from an LDAP source from the application controller. IN-6
Setting ldap_user_info on LDAP authentication engine. IN-6
Removed authenticate! method from Suse::Ldap module. This is now part of the LdapEngine.  IN-6
Using @user_login instead of user_login to denote the object's attribute. Fixed syntax error in sending to the log. IN-8
Added ViewDataFromSpecies functionality to view animal existing data after using radio button to check animal from species tab
Deleted Useless test case
Update supervisro
- Updated to V4.0.3.2.0 for Alpha2
- Modified comment
- Created V4.0.3.3.0
- Expenses:
  added return_url to list pass-through parameters
fix extension js files' paths to show page numbers
(#14641) Fix for incorrect limit command arguments for ip6tables provider
Merge pull request #79 from mediatemple/limitfix

(#14641) Fix for incorrect limit command arguments for ip6tables provider
1.1.7 added simple acp theme changer.
Added populating parent object in nested objects.

1. Added populating parent object in nested objects.
2. Refactored tests and internals.
3. Added ability to specify a different Id attribute.
4. Updated ReadMe.
included some data mining. please regard this was all hacking most of the code needs clean up
Merge branch 'master' of github.com:renepickhardt/related-work.net
Adding backbone-relational on the stack.
Adding an inclusion test for backbone-relational
Adding backbone-relational in the stack
Adding an inclusion test for backbone-relational
Merge pull request #66 from pierre-duchesne/master

Adding backbone-relational in the stack
Added delete_account service
add chain rule question
Merge branch 'master' of https://github.com/ricardomayerb/macro-theory-UDP
Explicitly add http:// prefix if no protocol specified.
Fix JSHint warning.
Don't apply transaction history to Ripple lines.
case sensetive usernames
Merge remote-tracking branch 'origin/master'
new reward

the reward function is the actual reward * probability of that task ()check out the documentation..
add specified message
Adding threats to validity, changing when figure, searching for 'QA team' to confirm results about who.
Recursively scan for schemes in the Packages directory, fixes #3

Until now, we were only looking for schemes in the "Color Scheme - Default"
directory. Now we scan the Packages directory for directories containing schemes,
so they will be cycled through, no matter where they're located.
PSST-60: Adding glusterfs::default recipe to all attrs

Debugging node attribute stuff
needs start before commit?
Also adding ability to run from a different remote
address commit
conflict resolved
Named parameters are possible with a dictionary for params
Change default flymake error color from red to yellowish
menu of register changed
json structure changed
haha, un oubli, faites semblant de rien
Listado de cupones disponibles para devolver
2.4: It works a little better (that's good), but I don't know why (that's bad).
Added files for assembly overlaps.

Signed-off-by: Sébastien Boisvert <sebastien.boisvert.3@ulaval.ca>
added job scripts. for overlap analysis

Signed-off-by: Sébastien Boisvert <sebastien.boisvert.3@ulaval.ca>
add validates(phone for users), site add phone
phones, if delete sotrudnik
Change the header name convention for hear names consist of more than one words
removed header, not used
added bibliography
added package for algorithms
added copyright and bilbio
some first writeups about two-sample testing
Merge pull request #4 from karlnapf/master

first work for hypothesis testing
Issue #44: Fix archive widget so that dates render correctly
Merge pull request #45 from mlewis-everley/44-archive-widget-fix

Fix archive widget so that dates render correctly
posprzatane
add example for lib, remove to resty dir
Completed tests for DBWrapper check classes.
delete return error permission if not owner
added notficiation quota information to api
Merge branch 'develop' of github.com:socialize/socialize_python_sdk into develop
cropped QuantDesk/#1122 photos
fixing process types
improved entity obersver
final ack uses packet num 3
Update readme, remove Rakefile
match on 14-digit FCC number
Octopress init
Site updated at 2012-12-23 15:12:40 UTC
update
rocent
Octopress init
Site updated at 2012-12-27 04:31:01 UTC
Site updated at 2012-12-27 04:59:52 UTC
Merge branch 'source'
delete
Merge branch 'source'
update
update
update layout
update layout
update
troubleshoot the sign in notification
Add Ruby on Rails snippets
Unsecure this bitch
Added placeholders for PlayBook and Torch.
dict commit
Merge branch 'master' of github.com:thatperson42/Surrealist_poetry
sinatra base template
don't sysout polynomial
Merge branch 'master' of github.com:themadcreator/rabinfingerprint
updated db, layout changes, interface changes, API progress
removed unneeded configuration
added direct orders documentation
Site updated at 2012-11-10 22:45:45 UTC
Fixed Directory Permissions Issue on new install
-Use 774 instead of 764 (Better group access)
Cambio en la redacción
hide archive link when screen width less than 400px
add icon font
new header for mobile device
replace icons in header with icon font
replace icons with icon font
modify padding of archive page
add database testing infrastructure to pmc
Fixed all references of typo ".travis-yml"

Change is related to travis-ci/travis-ci.github.com#152.
Merge pull request #153 from datag/master

Fixed all references of typo ".travis-yml"
AssetFile -> Assetfile
Add compiling code
No need to use Ruby, I thought it will get bigger
Debugging messages...getting closer?
Merge branch 'master' of github.com:trogdor3222/CS4516---Project-1
Add documentation for JSObserver

Adds documentation for JSObserver and updates documentation for the
observer option in general
Fix tab/spaces in observer.py
Merge branch 'JSObserver'
CNAME file added"
first post