use GETFIGMODEL
Merge branch 'master' of github.com:ModelSEED/Model-SEED-core
Changed Private and FileDB to handle metadata (and reserved metadata) correctly. Initial implementation of find_objects, still need to determine what queries we will allow.
Merge branch 'master' of github.com:ModelSEED/Model-SEED-core
find_objects now working in FileDB with the following queries: ==, >, >=, <, <=.
  - Value is interpreted as either string or number automatically
  - Range of values is supported, as well as multiple queries
  - Can query into nested metadata as well (need to test this)
Added function exportPodWiki

- exportPodWiki exports a selected set of
  POD documents from the ModelSEED::* hierarchy
  to a directory, applying formatting changes.

- This directory is usually the Github wiki
  for the ModelSEED.

- The formatting changes allow links of the
  form L<ModelSEED::Package> to actually
  work correctly.
Small fixes to documentation
Merge branch 'master' of ssh://git@github.com/ModelSEED/Model-SEED-core.git

* 'master' of ssh://git@github.com/ModelSEED/Model-SEED-core.git:
  Small fixes to documentation
  Added function exportPodWiki
  find_objects now working in FileDB with the following queries: ==, >, >=, <, <=.   - Value is interpreted as either string or number automatically   - Range of values is supported, as well as multiple queries   - Can query into nested metadata as well (need to test this)
  Changed Private and FileDB to handle metadata (and reserved metadata) correctly. Initial implementation of find_objects, still need to determine what queries we will allow.
  use GETFIGMODEL
Changes to Configuration internals

- MooseX::Singleton having troubles with save()
  method during object destruction. See issue:
  https://rt.cpan.org/Public/Bug/Display.html?id=77051

- Now wipes configuration file if JSON contained
  within is invalid. Restores to default configuration.
Merge ModelSEED::Store::Private
Fix ModelDriverV2 to use Configuration, Store

- ModelDriverV2 now uses Configuration and Store
  objects instead of Environment and ObjectManager
Changes to Store and Store::Private (internal)

- Store now correctly handles case where no user
  is logged in: username becomes "PUBLIC" and
  there is no user object.

- Store::Private now correctly initalizes inside
  Store, Store::Private now creates composite object
  when no ModelSEED::Database is supplied.
Remove date string from ObjectBuilder

- This causes uneccesary code-churn on
  MS::DB objects. Removing it will generate an identical object
  (and no git "modified" flags) if no properties were actually
  changed.
Small change to Store::Private, added get_object_by_uuid method
Merge branch 'master' of github.com:ModelSEED/Model-SEED-core
Changes to get MS objects working with Store

- MS objects now use ModelSEED::Store not
  MS::ObjectManager

- MS::DB objects no longer have creation time
  in the header. See previous commit:
  7ff08e20ce4cd91e13ae91b0e2860411ef834e41
  for details.

- Changes in BaseObject, ObjectBuilder
  to support switch to ModelSEED::Store.
Changes to Store to support factories

- Changed Factory classes:
  ModelSEED::MS::Factories::PPOFactory
  ModelSEED::MS::Factories::SEEDFactory
  to use ModelSEED::Store

- Added 'create' function to ModelSEED::Store
  that creates a ModelSEED::MS object and returns
  it with the correct parent attribute.
Implementing FBA
Merge branch 'master' of ssh://git@github.com/ModelSEED/Model-SEED-core.git

* 'master' of ssh://git@github.com/ModelSEED/Model-SEED-core.git:
  Small change to Store::Private, added get_object_by_uuid method
  Remove date string from ObjectBuilder
  Changes to Store and Store::Private (internal)
  Fix ModelDriverV2 to use Configuration, Store
  Merge ModelSEED::Store::Private
  Changes to Configuration internals
Adding ms and stores CLI binaries.