labofsahil/github-event-dataset-2012 huggingface dataset:
fix R CMD CHECK warning

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/xcms@68974 bc3139a8-67e5-0310-9ffc-ced21a209358
Add parameter mzdec to diffreport and plotEIC
 mzdec is the number of decimal places of the m/z values in the EIC plot title

Signed-off-by: Carsten Kuhl <ckuhl@schur.ipb-sub.ipb-halle.de>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/xcms@68983 bc3139a8-67e5-0310-9ffc-ced21a209358
Bug Fix to lock mass filter and added documentation

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/xcms@69736 bc3139a8-67e5-0310-9ffc-ced21a209358
Simplify `filepattern` specification.

Using the `ignore.case` argument to `list.files` obviates the need to specify
upper- and lower-case characters in the regex pattern.
Re-indent, remove trailing whitespace, and fix comment syntax.

Reformat according to the Bioconductor coding standards
(http://wiki.fhcrc.org/bioc/Coding_Standards). No attempt to break up 80+
character lines has been made.

Some comments were using a single `#`, whereas the recommended style is `##` for
indented comments.

"writemzdata.R" had DOS-style line endings; these were corrected to Unix-style.
Use S4 generic methods for creating `xcmsRaw` objects.

Loading the raw data is now handled by generic "loadRaw" methods. This allows
data loading via alternate means, such as from a database, without having to
make modifications to the xcms source. New data backends can be used simply by
passing them as the `filename` argument to `xcmsRaw` and defining a `loadRaw`
method on that class.
Indent "AutoLockMass" method export with spaces.
Convert NAMESPACE to unix line-endings
Refactor `xcmsRaw` to use generic `xcmsSource` methods.

`xcmsRaw` no longer has hard-coded loading of raw data; it uses children of the
`xcmsSource` class to provide the raw data it uses. This means that different
backends could be added freely simply by defining new implementations of the
`xcmsSource` method.

Currently, there are classes which handle reading from files to provide the same
level of functionality as the hard-coded version of `xcmsRaw`.
Gramatical corrections and additional descriptions
update
Merge branch 'master' of github.com:herry13/pet
Add specific controller js files to Sprockets config (#79)
Add test and mini refactor
- Fix database
- Create User Controller
- Add db function
add operator class&do it tonight
Catch Exceptions from building the email folder list.
A bit of cleanup, start removing some TODOs
Renamed 'nodeselect' to 'sync_selection'
added backbonejs models and views
[ai] use random bots as ahbot bidders
[ai] use z-coord when teleporting a random bot
[ai] ahbot console spam level reduced
[ai] keep bot strategies on reset
anden import
updatering
don't include <init> and <clinit> in reflection method lookup
h5
Merge branch 'dev'
Added a basic Equipment class and unittest
[#1]Time Response Times for all methods and report on them with test results
[#12]Allow two different hipchat rooms, one for all results, one for errors/important results
[#11]Convert to ng gem(draft)
[#11]Convert to ng gem(done)
Merge pull request #13 from iron-io/feature-ng-benchmarks

Feature ng benchmarks
use latest arrow and modify run.js handle np portnum specified case
fix issue #525 examples fail their unit tests

rm all boilerplate tests
rm all binder tests
use command arg array to handle different run commands
Merge pull request #727 from lzhan/mimorfix

two minor changes: use latest arrow,  modify run.js handle no port num specified case
Merge pull request #729 from isao/issue525

fix issue #525 example unit tests crash or fail
Actualización de datos via Ajax

Cuando haces scroll hasta el final de la página, pide el siguiente
offset de elementos
Adds a violet background to button.xcf
Can display PayPal balance in admin
Adds og: properties to <head> only if agent is Facebook
Add text to QR code service.
Remove sprites for now.
Correctly buttonizing paths with leading spaces in DBG buffers

Just adjusting a regexp.
monkey string
film pages can now have videos added to the image strip
added film frame captions to film strips
added clients type and updated permalink stuff
For past bakes with no orders, do not display adhesion orders, but 0
c-stringify raw strings
manually decode utf8 strings
COMP: Fix compilation warnings and typo

* unused variable
* signed vs unsigned comparison
* old copy paste settings label

Closes #1970

git-svn-id: http://svn.slicer.org/Slicer4/trunk@19985 3bd1e089-480b-0410-8dfb-8563597acbee
COMP: Missing cassert include in vtkMRMLVolumeRenderingMultiVolumeTest

git-svn-id: http://svn.slicer.org/Slicer4/trunk@20114 3bd1e089-480b-0410-8dfb-8563597acbee
COMP: Minimize confusion and improve readability by consistently using ".toLatin1()"

* There were occurrences of:
   .toLatin1().data()
   .toStdString().c_str()
   .toAscii().data()

these ones have been replaced with the shorter and equivalent form ".toLatin1()"

* The function qPrintable() is also used to print a QString within a std stream.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@19662 3bd1e089-480b-0410-8dfb-8563597acbee
STYLE: Clean code within vtkMRMLSceneViewNodeStoreSceneTest

* Use anonymous namespace so that function used and defined locally are
clearly identified.

* Function returning a boolean are not returning a boolean.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@19663 3bd1e089-480b-0410-8dfb-8563597acbee
STYLE: Rename settings panel titles, and Favorite Modules toolbar

Issue #1870

git-svn-id: http://svn.slicer.org/Slicer4/trunk@20118 3bd1e089-480b-0410-8dfb-8563597acbee
ticket #1466 - jDatetime gave bad results when parsing ISO 9601 dates with a timezone. original fix by LionelT
ExprSimple.fan
Cleanup
Fix organization spec
Integrated IAtomMatcher into the node and arc construction

The DEFAULT_ATOM_MATCHER provides a SymbolMatcher which mirrors the
behaviour of the previous UIT implementation.
Added XML comments to classes under Types folder.
Forgot one file from previous commit.
Added pdf() function that returns the PdfBase object used.

Necessary for a new MinimizerExpr class to know the pdf of each of its
        minimizers.
Added new MinimizerExpr class to deal with simultaneous fits.

It allows to simultaneously minimize a sum of minimizers.
add fixes to PCA kNN method
Created per-bin nored plotter
Incorporate Matt Hauck's SSLSocket nonblock read/write cleanups.
Same-encoding transcode should not transcode.

This could be further improved to share the byte[] backing the
incoming ByteList, but the code isn't quite structured that way
right now.
Cache the jffi type in the ruby-ffi type instead of rebuilding each time.
Answers template and rendering
Adding answers view
Question text fixed and overview titles now use correct font face
start
Merge branch 'master' of github.com:justdark/ds
Work on the isentropic pulse convergence test
Weno IFV is working at 2nd order, going to try coding with Sasha's A2C formula
WENO-WHAM is being built. Right now it's over-writing weno-riemann, we'll put it back soon.
Added RK4 time integration, WHAM-type WENO is still unstable
add stone tile placement on empty tiles
[scenarii] Change speed and robot orientation
[scenarii] Disabled keyboard control, added middleware
pass base_uri to UI class
deleting custom comment app, adding README
adding README
SWITCHYARD-650 Forge support for adding switchyard to openshift apps
bump to 0.4.0.Final
bump version to 0.5.0-SNAPSHOT
SWITCHYARD-722: switchyard plugin unit test fails when run repeatedly without clean
validation correstion
debian/rules: Include buildflags.mk for DEB_BUILD_MAINT_OPTIONS

Otherwise that variable has no effect.
Bump Debian version
fix example6: missing arg to defaultCertificateVerifier::verify
Merge pull request #16 from mabrand/master-fix-example

Fixed example6: missing arg to defaultCertificateVerifier::verify().
Bindings: Added some yardoc
basic views and functions
Implement elem? : S [a] a -> S boolean
Damn errors driving me nuts a bit.
Contiuning tomorrow...
Switch to ActionbarSherlock
Other fixes
Small Update

Resume change, wording change on index, and pdfs added for history.
* ftpclass.cc: don't try to upload if ALLO fails.
estrutura do projeto.
Atualizacao do Boxfile
Made og:url and link rel canonical dynamic
smacker audio: sign-extend the initial 16-bit predicted value

Fixes Bug #265

Signed-off-by: Justin Ruggles <justin.ruggles@gmail.com>
(cherry picked from commit 12cbbbb4abda2de0ea123282ccf7ebee61517f7d)

Signed-off-by: Anton Khirnov <anton@khirnov.net>
x86: h264_qpel_10bit: port to cpuflags
x86: PALIGNR: port to cpuflags
flacdec: reverse lpc coeff order, simplify filter

Reversing the lpc coefficient order simplifies indexing in
the filter.

Signed-off-by: Mans Rullgard <mans@mansr.com>
Print full compiler identification, not only version number

This provides a more precise identification of the compiler used.

Signed-off-by: Mans Rullgard <mans@mansr.com>
Minor changes. Beaver added
Second commit with 'toString' methods changes
Changes in toString methods of StaticScope, IRStaticScope; IRStaticScope is tweaked for easier determination by ir reaading code;
Changes in toString methods of IRScope; Type of IRScope descendants is determined by enum and may be easier recreated by ir reader;
Changes to lexer, grammar; Parser and lexer are build; Changes to factories
Options for reading added
IRFacade changed to deal with parser and lexer; minor changes
bug non squared image fixed
Simple flash activation: auto mode.

Other modes are available:
 - torch,
 - red-eye
Updating french locale for music
Updating french locale for dialer app
Updating french locale for sms app
Updating french locale for browser app
Updating french locale for system app
Updating french locale for settings app
Updating french locale for video app
Updating french locale for contacts app
Updating french locale for email app
Updating french locale for costcontrol app
Change too long rename bluetooth label
fix: Typo in french locale of music
Merge branch 'locale-fr' into locale-fr+public-5

Conflicts:
	apps/music/locales/music.fr.properties
Add schemata quick5, stenotype.
Adding a nuget-install tag
Adding a few early lines of documentation

Probably need to switch to a more "generated" form, suitable for html
Bumping version
Changing default to Sakefile.shade

Or if that's missing, will use the only .shade file in current directory
that doesn't start with _ as a fallback default
Removing explicit filename on build bootstrapper
Directory delete throws errors sometimes? No repro?
Don't need to provide workingdir as current dir
Avoiding the use of "version" as a parameter - too easy to collide
Adding extra parameter to build tag
Using packageVersion attribute
updated version
Adding default behavior as library's Sakefile.shade

`sake init` target will also generate files in the current directory
Remove 1.8 warning on loading yard from rubygems
Make diff code 1.8 compatible
Fixed bugs in attribute._getAttrCfg and state.removeAll, found while
bumping up unit test coverage for attribute-extras and
attribute-core. Fixes #2531891. Fixes #2531892

Added standalone state unit tests also.
Build for _getAttrCfg and removeAll fixes. Fixes #2531891. Fixes #2531892
Merge remote-tracking branch 'upstream/master'
Added state unit tests to unit and coverage
Fixed bugs on scrollview pagination offsets
Build scrollview-paginator
New manual test
Merge branch 'master' into scrollview
Added path to test valueFn:string
Added basic unit tests for anim-shape-transform.
Merge remote-tracking branch 'upstream/master'
Merge remote-tracking branch 'sdesai/master'
Fixed state unit test suite name, for reporting
Merge branch 'master' of yuisource.corp.yahoo.com:yui3
reset() now allows the caller to override the event's src property. [Fixes #2531888]
Build model-list.
Merge remote-tracking branch 'upstream/master'
Loader changes for anim-transform to anim-shape-transform change. Add anim-shape-transform tests to unit and coverage.
Merge branch 'master' of yuisource.corp.yahoo.com:yui3
Merge branch 'master' of yuisource.corp.yahoo.com:yui3
submodules off
submodules off
add stackResult.py
change header style
script for sort question
fix bugs in sort
fix bugs in sort
Merge branch 'dev' of https://github.com/lvkun/algs4 into dev

Conflicts:
	script/sort.py
fix indent error in sort
add Deque & DequeTest
add checkstyle
test case and fix bugs in deque
remove style warning
code clean up
Add RandomizedQueue
Implement RandomizedQueue
remove final in Deque
fix loitering
Use header origin from request to build local callback for dataset retrieval
* model-view-projection updating
* circle rasterization
Merge branch 'master' of https://github.com/macicek/SGL

Conflicts:
	sgl.cpp
and final fix
Renamed file to match module name.
Updated the ruby-debug-ide gem.
Added features and fixed source code for converting roman numerals to decimal numbers.
Added a new feature to convert decimal numbers to roman numerals and back to decimal numbers.
Added the tree_merge kata with a basic feature.
Bugfix: duplicating unmodified array element, so the array element itself is not modified.
Added some more examples for converting decimals into roman numerals.
Removed the commented "pending" line.
Fixed the roman to decimal feature description.
Fixed a step definition.
fixed weird bean appearing bug
Bug fixes
Merge branch 'master' of github.com:marykw/RBOR
Parse analogs
pair.rbにバグをいれてしまったので戻す
don't assume 'internet' for addresses
VimWiki updates, default color scheme.
Remove doubleParallelProjection.
Add test_task_plans_on_between() to WorkPlanTest

test/unit/work_plan_test.rb
- Add test_task_plans_on_between().
Updated .gitignore to ignore conf files
update VERSION for v1.1.1

Signed-off-by: Michael Roth <mdroth@linux.vnet.ibm.com>
Provide lchmod only if it's available
fs.chmod that returns promise
Use chmod instead of lchmod.

It's about rights on a directory, by algorithm logic it won't be symlink
Set up code and linked all actions… still not working
common-sh.rc: Added aliases for *vimtex (setup NERDTree to ignore unneeded files)
Added mail configurations to development and production
Added staging environment
refactored domain models, introduced SpjCodebookModel level
add registration are
replaced SS with SL (project renamed SLip)
convert urls to allura style

git-svn-id: http://svn.code.sf.net/p/pyx/code/trunk/pyx@3318 a4f5e268-e194-4f32-bce1-d30804cbbcc5
add a note about the allura upgrade

git-svn-id: http://svn.code.sf.net/p/pyx/code/trunk/pyx@3319 a4f5e268-e194-4f32-bce1-d30804cbbcc5
improved String#methods performance by caching RegExp objects
scroll Event
жэ
fixed deprecation warnings
new non-image header logo
replacing 'PTO' with 'Vacation'
improvements to mobile
Merge branch 'feature/non-image-logo' into develop
update obj defaults snippet
initial project version
removed images not ready
fix segmentation fault in Array#last
Merge pull request #393 from akuroda/array_last_fix

fix segmentation fault in Array#last
make mrb_hash_keys() non static function
Merge branch 'master' of github.com:mruby/mruby
``__END__'' must start at the beginning of the line.
Merge pull request #44 from unak/__end__

``__END__'' must start at the beginning of the line.
remove return at the bottom of void function
siema
Merge branch 'master' of github.com:mymlyn/test
change chibi-scheme.scm chibi.scm
Fixed tree scrolling out of view
Changed link tracking to work in medium trust
fixes "Call to undefined method mysqli_adapter::select_db()" bug in previous commit.
Added Hsp gaps to Blast job reports.

* Added migration for gaps
* Added sequences to test blast db to generate blastx and tblastn hits.
* Updated specs
* Updated gems
Updated Quorum executable files.
Switch to ncgr/blastxmlparser branch hsp_gaps.
Upgraded to blastxmlparser v1.1.0

* Bug Fix
* https://github.com/pjotrp/blastxmlparser/pull/1#issuecomment-7593069
Refactored lib/generators/templates/blast.rb

* Refactored Quorum::SearchTools::Blast
* Added blast report empty spec
Updated gemspec.
Removed FactoryGirl from specs.
Merge branch 'gaps'

Conflicts:
	Gemfile.lock
Changed travis-ci image branch to master.
Consistency checker defaults to using the 'most frequently used' implementation when on Windows to avoid memory (un)mapping problems
added timeout to Promise awaits; more scaladoc for VT.scala
tests: fix session.save_path in session storage test
Merge pull request #710 from Vrtak-CZ/session_save_path

tests: fix session.save_path in session storage test
Database: added tests for multi primary key
Database: fixed BC in getPrimary
Database: fixed insert into table with multi-column pk
Database: fixed state of cached entities where deleting
Database: SqlBuilder refactoring
Http\Session: fixed IE9 bug "twice sent cookie" [Closes #832][Closes #834]
Session: fixed "undefined index 'C'"
SessionSection: removed final from class
Http\Session: session is not regenerated after 30 minutes; only new session is regenerated
Configurator: constants DEVELOPMENT, PRODUCTION are deprecated
DI\ContainerBuilder: fixed processing of services with falsy, numeric (/-?\d+/) or short name
DI\ContainerBuilder: checks if created classes are instantiable
Config\Compiler: added support for anonymous services with integer names
Latte: added support for {input $control}, {label $control} and n:input=$control, where $control is object
Latte: macro {formComponent} accepts object
removed dependency on Debugger::tryError()
removed set_error_handler from MemcachedStorage & SendmailMailer
Debugger: EOL after die()

It looks better in console.
Debugger: die() replaced with echo & exit
used <meta charset="utf-8"> instead of http-equiv
[maven-release-plugin] prepare release netty-3.4.3.Final
Adding some client-requested functionality, including donations tab to events and updated dashboard log for edited contacts
added user search filter to project page
Merge branch 'master' of git@github.com:newicon/Nii.git

Conflicts:
	protected/app/modules/dev/assets/ape/config.js
Change 'get' method name to '_'
begin of add product view
modfide service
Moved LazyFixer.
Moved more test classes.
vl/compositor: add per vertex color suport

Used in subtitles, for example.

Signed-off-by: Christian König <deathsimple@vodafone.de>
vl/compositor: add support for per layer dst areas

Signed-off-by: Christian König <deathsimple@vodafone.de>
vl/csc: simplify matrix handling

A csc matrix is only 4x3 not 4x4, also define a VDPAU compatible type for it.

Signed-off-by: Christian König <deathsimple@vodafone.de>
st/vdpau: avoid an unnessasary copy

Delay the actual mixer rendering until we really
know which surface is the real destination.

Signed-off-by: Christian König <deathsimple@vodafone.de>
st/vdpau: implement BitmapSurfaceCreate/Destroy

Signed-off-by: Christian König <deathsimple@vodafone.de>
st/vdpau: implement BitmapSurfacePutBitsNative

Signed-off-by: Christian König <deathsimple@vodafone.de>
st/vdpau: implement BitmapSurfaceGetParameters

Signed-off-by: Christian König <deathsimple@vodafone.de>
st/vdpau: implement OutputSurfaceRenderBitmapSurface

Signed-off-by: Christian König <deathsimple@vodafone.de>
st/vdpau: implement BitmapSurfaceQueryCapabilities

Signed-off-by: Christian König <deathsimple@vodafone.de>
st/vdpau: add support for per vertex colors

Signed-off-by: Christian König <deathsimple@vodafone.de>
st/vdpau: fix default swizzle for Output/Bitmap samplers

Signed-off-by: Christian König <deathsimple@vodafone.de>
st/vdpau: implement OutputSurfaceQueryPutBitsIndexedCapabilities

Signed-off-by: Christian König <deathsimple@vodafone.de>
st/vdpau: implement OutputSurfacePutBitsNative

Signed-off-by: Christian König <deathsimple@vodafone.de>
st/vdpau: implement OutputSurfaceGetBitsNative

Signed-off-by: Christian König <deathsimple@vodafone.de>
st/vdpau: implement OutputSurfaceQueryGetPutBitsNativeCapabilities

Signed-off-by: Christian König <deathsimple@vodafone.de>
st/vdpau: implement VideoSurfaceGetBitsYCbCr

Signed-off-by: Christian König <deathsimple@vodafone.de>
st/vdpau: implement OutputSurfacePutBitsYCbCr

v2: the csc_matrix is optional

Signed-off-by: Christian König <deathsimple@vodafone.de>
st/vdpau: implement OutputSurfaceQueryPutBitsYCbCrCapabilities

Signed-off-by: Christian König <deathsimple@vodafone.de>
vl/compositor: fix shader in/out numbering

Michel pointed out that my assumption of a global
index namespace is incorrect and breaks r300g.

Signed-off-by: Christian König <deathsimple@vodafone.de>
i915: Fix piglit fbo-nodepth-test on i830.

This is a direct port of fc4fba52cf7e9616c70dd76b4d6bdba6582e157b from
i915, and fixes GPU hangs when running piglit.

Bugzilla: https://bugs.freedesktop.org/show_bug.cgi?id=41372
Reviewed-by: Eric Anholt <eric@anholt.net>
NOTE: This is a candidate for release branches.
Sass is gone, we don't need HAML_* any more
Removed warnings

Closes issue #409

Signed-off-by: Norman Clarke <norman@njclarke.com>
Relaeased 1.0.2
1. Created SaveClose
2. Created PreparedQuery & SqlClose
3. Created FileUtility
4. Created StringConstant
5. Created OsUtility
configuration params added to API
DOC: add info on docstrings in test functions/methods.  Also fix a typo.

Reviewed by @charris in combination with PR-358.
Optimize matrix calculation.
Updated changes from last class
api docs: adding link to build log to footer
パス関連の調整
[refactor][s]: rename lib to src.
2012-11-15  Patrick Eriksson  <patrick.eriksson@chalmers.se>

            * arts-2-1-372

            * src/ppath.cc (do_gridcell_3d_byltest2): Start on alternative
            version of the function. 



git-svn-id: https://www.sat.ltu.se/svn/rt/arts/trunk@8003 aaf1aab0-4228-0410-ad68-8dceda47f409
2012-11-15  Patrick Eriksson  <patrick.eriksson@chalmers.se>

            * arts-2-1-373

            * src/ppath.cc (do_gridcell_3d_byltest2): Completed. Now the
            active version. 



git-svn-id: https://www.sat.ltu.se/svn/rt/arts/trunk@8005 aaf1aab0-4228-0410-ad68-8dceda47f409
all that over a path issue; ScalaEval is still broken under Eclipsea
got everything working again, I think
Added method to find the crosses
markdownに対応
Merge pull request #1 from crazymaster/master

READMEをmarkdown記法に変更
trim functions created
Merge branch 'utils'
create player command added
getId method added
command included
command plugged
Merge branch 'createPlayer'
sentence classes added
sentences added
Merge branch 'talk_command'
method renamed
reminder
the method must be able to return null
sql dump added
script to recreate the DB added
Merge branch 'DB'
optimization of vertex/edges removing
Eliminate some one-arg asserts.

The only thing more fun than debugging non-deterministic
scaladoc crashes unrelated to one's change is doing so with
all one-argument asserts.
Account for existence of scala's ClassfileAnnotation.

Apparently this thing is not real well tested, as the
scaladoc code was written as if it does not exist.
one more macro test sdisabled that lipped through the net before.
disabling scaladoc tests. Don't know how to fix them to make them work under SIP 18.
Merge commit 'refs/pull/395/head'
Revert "Update cog to version 2.3"

This reverts commit 7e4900e9b5a20cf675ae012cf5f5eee7bd7b936c.
Add jython class garbage to ignore
Update cog to 2.2
Updated PayPal SDKs in line with Core update
Make populate create balanced rings by default
variable declaration and access through long names, RT #75632
Don't check revocation lists when validating x509 certificates
against the Windows stores.
  - Fixes #107
Change default setting for mirror local groups. (picked from master branch)
 - Closes #119
Clean-up/overhaul pGina.InstallUtil.exe (Picked 3 commits from master branch)
  - No longer calls pGina.CredentialProvider.Registration.exe, instead
    calls the needed APIs directly.
  - No longer calls pGina.Service.ServiceHost.exe to install/uninstall/start/stop
    the service.  Instead, calls out to the .NET runtime install utility
    for install/uninstall and uses the System.ServiceProcess.ServiceController
    for start/stop.
  - This probably obsoletes pGina.CredentialProvider.Registration.exe, and
    could be removed.
  - (Un)Installer no longer pops up console windows.
  - Various other minor tweaks.
  - Use .NET installutil.exe if available, otherwise, use
    ManagedInstallerClass.InstallHelper.
Add LogonUser pInvoke (Picked 4 commits from master branch.)
 - Use pInvoke for credential validation.
 - Closes #128
 - Add some documentation for the pInvoke
 - Set hToken to zero just to be safe.
Check for empty string in ResolvePluginDependencies (picked from
master branch)
  - Closes #127
  - Also normalize line endings
fix for absolute paths in css url declarations
Merge branch 'absolute-css-url', remote-tracking branch 'origin' into absolute-url
enabled libxpm for gd on windows
Merge branch 'PHP-5.3' into PHP-5.4

* PHP-5.3:
  enabled libxpm for gd on windows
enabled libxpm for gd on windows
Merging PR #116
Update NEWS for #61541
Merge branch 'PHP-5.3' into PHP-5.4
Merge branch 'PHP-5.4'
add note about corrected tiger hash output
autocomplcacheのruby設定をrubyのカテゴリへ移動
Fixes #3452, add UserCountry to Plugins_Tracker config and in order to avoid possible fatal error, moved UNKNOWN_CODE to Tracker_Visit and use 'country_code' instead of LocationProvider constant.


git-svn-id: http://dev.piwik.org/svn/trunk@7237 59fd770c-687e-43c8-a1e3-f5a4ff64c105
Do not warn about using both pkg_* and pkgng during pkg2ng
Simplify and fix remote lookup since a pkgdb_it_rewind() is not possible

References:	#195
Suggested by:	jlaffaye
Track yet another portmaster upgrade.
*7847* Prevent title grid rows in category grids from wrapping (needs better colspan)
*7252* Introduce locale key for reused password error
just a log message
Notes regarding FOP r1356646 (after FOP 1.1),
in which FopFactory.newInstance() was replaced with
FopFactory.newInstance(URI)
Remove unused imports (azerolo)
table handling improvements, contributed by Alberto Zerolo
TableModelRow is redundant following Alberto's contrib
Fix issue with ST_OnOff (see shared=math-2ed.xsd for details)
Deleted as part of Alberto's recent contrib
Preserve mc:AlternateContent in a pptx slide's p:controls
OpcPackage instead of wmlPackage
remove unused import
Reinstate use of TableModelRow (Alberto 11 Dec)
interface CustomXmlPart implemented by CustomXmlDataStoragePart and
JaxbCustomXmlDataStoragePart.  customXmlDataStorageParts collection is
now Map<String, CustomXmlPart> 
Alberto's contrib .. forgot to add.
fixed vertical merging of table cells in xhtml importer
(cherry-picked from 05fdacb)
turn down logging
Avoid NPE
Missing resource is a warning, not an error (eg don't want error
messages if not using moXy)
comment out 2 debug-level log
XSLFOExporterNonXSLT is a Proof of concept of generating XSL FO without
using Xalan/XSLT.  This approach is faster and less memory intensive.
Merge pull request #39 from pnml/upstream

XHTML importer produces incorrect files with vertically merged cells in tables
Escape. Gets you back to writing.
async, public src path code.
PP command fix
Merge branch 'master' of https://povilas0@github.com/povilas0/OS.git

Conflicts:
	program2.txt
Removing old ToC aside.
frame fix (float size revert)
Done.
Do not log twice.
Some additional information about when and where the log event happens.
Log user id.
Merge pull request #32 from progma/iss14-light-feedback

Done.
Done items and what's gonna happen
Tidy up formatter selection
Add first set of filters to listings
Capitalization of GitHub. Also, to/too.
Merge pull request #130 from sillygwailo/gh-pages

Capitalization of GitHub. Also, to/too.
changes on layout.html
Merge branch 'master' of https://github.com/prswb/prswb
fix signing contracts without lines and with lines that have no items assigned
+ fix some specs
Added a small explanation to the stubbing feature
send newsletter to subscribers
Fix for #23
Merge pull request #108 from pyrus/bugfix/23

Fix for #23
re-write english proficiency
added "eject ejectedItems by other ejectedItems" while dragging
added "eject ejectedItems by other ejectedItems", BUT some strange bugs
Merge branch '2dModel_EjectedItems' of https://github.com/qreal/qreal into 2dModel_EjectedItems

Conflicts:
	plugins/robots/robotsInterpreter/details/d2RobotModel/d2ModelWidget.cpp
	plugins/robots/robotsInterpreter/details/d2RobotModel/worldModel.cpp
	plugins/robots/robotsInterpreter/details/d2RobotModel/worldModel.h
bavarde
add bootstrap as default css
suppress pes_local import
product must be in exchange folder
suppress pes_local import
Add a new memory system with direct buses between cores and DDR channels.
Merge branch 'master' into ddrmemory
Update DDRMemory to support the PID-based reserve/unreserve interface.
Distinguish between suspend and abort in the simulation step function.

The original implementation supported only complete abort of the
simulation. A while ago breakpoints ("bp ..." on the interactive
prompt) and program-driven simulation exceptions have been introduced,
but were implemented using the original abort mechanism, which
prevented any form of resumption. A later patch made all aborts
resumable, which was incorrect for anything but breakpoints and
program-driven exceptions. This patch addresses the situation by
providing separate support for aborts and "resumable exceptions". The
latter is used for breakpoints and program-driven exceptions, while
the former is used for simulaiton errors.
Ensure that exclusive families get created on only 1 core.

Until this point an exclusive allocate (allocate/x) would only reserve
an exclusive context on the 1st target core, then propagate a "normal"
allocation request to the remainder of the place. This patch changes
this behavior so that "allocate/x" entails the flag "single", ie
propagate the place ID but allocate on only 1 core.
Make bundle creates to go to only 1 core too, since they are exclusive for now.
Retouches to BREAK Operation

-Remove unnecessary family parameter first_lfid
-Reorganize interface of callee
Change "killed" to "terminated".

The thread and family state names "killed" are confusing.
Change them to "terminated" which is more clear.
Simplify read of bundle creation information from memory.
Simplify the display of the thread table.
Add a test for the I/O subsystem.
Add a compile-time flag to disable trace checks.
Clarify the documentation for configure-time macros.
Sanitize the reporting of cache statistics.
Ensure that bundle creation tests use cache-aligned requests.
Fix pipeline cycles accounting, also measure stalls.
Fix the storage access declaration for the DCA interface.
Merge branch 'master' into ddrmemory
Improve the DDR simulation; fix COMA protocols accordingly.
Update the DDR memory system with the new DDR interface semantics.
Remove code duplication in InclusionValidator and ExclusionValidator.

Orginal code by @jamescook

Closes #1352

[Rafael Mendonça França + James Cook]
Merge pull request #5643 from rafaelfranca/remove-duplication

Remove code duplication in InclusionValidator and ExclusionValidator.
Fix warning: method redefine. Testcase name are duplicated.
Merge pull request #7666 from kennyj/fix_9fa3f102813eeeec440abd75870dfa7b23835665

Fix warning: method redefine. Testcase name are duplicated.
Add code statistics for Javascript and

CoffeeScript files to `rake stats` task

Orignal PR was #2270

Thanks to @nfm
Merge pull request #6566 from arunagw/add-javascripts-to-rake-stats-task

Add code statistics for Javascript and CoffeeScript files
Remove the dependent_restrict_raises option.

It's not really a good idea to have this as a global config option. We
should allow people to specify the behaviour per association.

There will now be two new values:

* :dependent => :restrict_with_exception implements the current
  behaviour of :restrict. :restrict itself is deprecated in favour of
  :restrict_with_exception.
* :dependent => :restrict_with_error implements the new behaviour - it
  adds an error to the owner if there are dependent records present

See #4727 for the original discussion of this.
Clean up dependent option validation.

We don't need the complexity of to_sentence, and it shouldn't be a bang
method.
move dependency logic out of generated methods
Unprivatise all the things

Well, not all of them, but some of them.

I don't think there's much reason for these methods to be private.
DRY up handling of dependent option
We need to check explictly that env['action_dispatch.show_exceptions']
is false.

If it is nil we can't raise the exception
Add moritz/Perl6-MIME-Base64 repository.
Cleaned up some awkward working in the README.
add rule for routing 'dashbaord'
change event name in CRUD operations, add before/after delete as well
default must_login to null, which will load default value from config file, key 'petro.auth.enable'
modify ender_attr_table to support process option, _render_filters to support lookup options from the model
modify CRUD actions to provide various callback features, add many variables to support model detection, , , and
modify codes during testing
form: add editable option, modify uild to accept and handle ; grid: modify process option callback to pass and accept 2 args, rewrite ormat to user parse_format to process column format only once, modify default_action function by adding
update and add more documents, also add tutorial
refresh code during testing
cambios 22 nov
nmix up to example
added some functionality for frenchquarterguide.com; added initial aws functionality.
Metodo GetArtilheiro
Merge branch 'master' of https://github.com/rdrgma/TI2P
Atualizacao metodos artilheiro
added changes for linux
Moved get_random() to Crypto.cc, where it probably belongs.


Signed-off-by: Peter Reiher <reiher@inktank.com>
Add BOM and normalize line endings of all script files.
Create bin/ subdir for stubbs module.

Moved roundup utiltity to bin.

Fixes #80
Ensure relative modules path is translated to absolute.

Also, rename rerun_file_absolute to rerun_path_absolute.

Fixes #81
Fixes #78
Adds the stubbs:migrate command

Fixes #43 by providing a new stubbs command to handle migrating Rerun 0.9 modules to 1.0 format to resolve breaks in backward compatibility (particularly around option processing).
changes groupId ninja to org.ninjaframework. 
Preparation for release to maven central.
Add initial proposal.
Multiline string proposal.
Add section on comments
Rename project to Seltzer, add package.json.
Add basic lexer.
Add a newline in expression test for extra fun.
Add keywords and more operators.
Add more token classes.
Don't forget all the parens.
Add support for column counting.
Clean up terminators.
Add true/false to keywords.
Add some parser skeleton.
Add framework for extensions, beginnings of parser.
Reverse = and :=.
Fix typo in for loop syntax.
Revise the parser and lexer.
Reverse = and := again (I promise this is the last time).
Work on parser more.
Fix unit tests, add parser tests.
Property: Add inheritance test.
Roughing out a user guide TOC for Template.
Merge branch 'template' into smugmug
Y.Property uses Y.EventTarget.
Merge branch 'property' into smugmug
xmlrpc updated
moved the cart to the sidebar
added ajax to the cart
added animation to ajax cart
make cart hide when empty
ajax tests updated
[bug 682730] Add ability to edit a translation w/o making it up to date.

This adds a checkbox to the submit new l10n revision modal. When it is
checked, the new revision keeps the based_on of the previous revistion
being edited instead of updating it to the latest approved and ready for
l10n en-US revision.

This allows edits on translations to be made without marking them as
up to date.
Changed typo in README.
Интересные объявления: переносим проверку региона в конец (вероятнее всего ошибки именно там) чтобы не блокировать остальные проверки
Недвижимость > Дома, дачи, участки. Продажа > Дома, дачи
Правильная разборка возраста для других животных
правильное название сеолинка "деревянные"
A more informative comment for config.asset.debug
Merge pull request #7006 from jaredbeck/issue_7005_explain_asset_debug

A more informative comment for config.asset.debug
Fixes "Cannot visit ..." with validates_uniqueness_of

Fixes issue with overrding ActiveRecord reader methods with a
composed object and using that attribute as the scope of a
validates_uniqueness_of validation.
Fix class_eval without __FILE__ and __LINE__.
Merge pull request #7072 from beerlington/fix_validations_with_scope

Use database value for uniqueness validation scope
Merge pull request #7076 from kennyj/fix_class_eval

Fix class_eval without __FILE__ and __LINE__.
Add support for optional root segments containing slashes

Optional segments with a root scope need to have the leading slash
outside of the parentheses, otherwise the generated url will be empty.
However if the route has non-optional elements then the leading slash
needs to remain inside the parentheses otherwise the generated url
will have two leading slashes, e.g:

Blog::Application.routes.draw do
  get '/(:category)', :to => 'posts#index', :as => :root
  get '/(:category)/author/:name', :to => 'posts#author', :as => :author
end

$ rake routes
  root GET /(:category)(.:format)              posts#index
author GET (/:category)/author/:name(.:format) posts#author

This change adds support for optional segments that contain a slash,
allowing support for urls like /page/2 for the root path, e.g:

Blog::Application.routes.draw do
  get '/(page/:page)', :to => 'posts#index', :as => :root
end

$ rake routes
root GET /(page/:page)(.:format) posts#index

Fixes #7073
AR::Integration must be included after AM::Conversion

Integration's definition of #to_param must override
Conversion's. Otherwise, there is a regression from
3.1 in the behavior of a non-persisted AR::Base instance
which nevertheless has an id.
Merge pull request #7081 from jfirebaugh/to_param_regression_master

AR::Integration must be included after AM::Conversion
Common behavior with adding formats to lookup_context for TemplateRenderer and PartialRenderer
Clean up validate method in Event Occurrence Resource
Use the right argument type.

This fixes 2 compile errors on OSX
Sim Project

Worked on porting modle to simulation
Revert "Update .gitignore"

This reverts commit efda4080edeafc07e77843889edf2c78fd9a352b.
deleting files
removed struct ID
fix blend_read
moving svg images of consensus trees to doc/img
Add vim-session to make sessions easier
Updated Brick to take Parameters. Modified IsolationStudy model slightly.
Merge branch 'master' of github.com:rynobey/env
replace fuzzyfinder by ctrlp
Better formatting for models.BasicSite
Fixed fchown tests on Windows
Fixed poll.slow property on Windows
Adapted UDP.send to accept objects conforming to the buffer interface
Also added UDP.sendlines
Updated TODO
Update Partner.LeadInsert-SpotOn1.html
fix index out-of-range

git-svn-id: https://svn.salilab.org/imp/trunk@15907 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Remove unnecessarily verbose command lines.


git-svn-id: https://svn.salilab.org/imp/trunk@15908 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
updates to 1z5s example

git-svn-id: https://svn.salilab.org/imp/trunk@15910 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
descrese domino heap size

git-svn-id: https://svn.salilab.org/imp/trunk@15911 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
print index of highest scored 

git-svn-id: https://svn.salilab.org/imp/trunk@15912 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
update example files

git-svn-id: https://svn.salilab.org/imp/trunk@15913 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
fixed png output problems
removed aquasaxs
added crysol if existent


git-svn-id: https://svn.salilab.org/imp/trunk@15916 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
fix default value

git-svn-id: https://svn.salilab.org/imp/trunk@15917 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Need to export functions to be able to use them in rmf_avro_dump.


git-svn-id: https://svn.salilab.org/imp/trunk@15918 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
added upper bound of 1000 for sigma



git-svn-id: https://svn.salilab.org/imp/trunk@15919 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
changed covariance sampling strategy slightly, using reasonnable bounds for
sigma and tau



git-svn-id: https://svn.salilab.org/imp/trunk@15920 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
updated scripts and 3sfd example

git-svn-id: https://svn.salilab.org/imp/trunk@15921 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
updated input files

git-svn-id: https://svn.salilab.org/imp/trunk@15922 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
remove files

git-svn-id: https://svn.salilab.org/imp/trunk@15923 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
remove files

git-svn-id: https://svn.salilab.org/imp/trunk@15924 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
updated subunit lists

git-svn-id: https://svn.salilab.org/imp/trunk@15925 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
sync RMF to 6fd1dfcd7f72347067c409c1597b673da0a93a52

git-svn-id: https://svn.salilab.org/imp/trunk@15927 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
on evite de recharger le cartouche
Fixes SI-5441.
Merge pull request #615 from axel22/issue/5441

Clarify docs, see SI-5441
SI-6188 ICodeReader notes exception handlers, Inliner takes them into account
SI-6157 don't inline callee with exception-handler(s) if potentially unsafe
Merge pull request #1059 from magarciaEPFL/ticket-SI-6188

SI-6188
adjust document list
[subdue] use a case for subdue
Merge pull request #304 from portertech/subdue

[subdue] use a case for subdue
Резервлер хостов
Added Gentoo Scripts
add contact in header
Picker clients should use onSelect

Noticed this while addressing root cause of ENYO-706
vendore
vendore
move gh custom group to gh-common.el

Doing so ensures that the group is defined even when loading just
a particular support library instead of support for the complete
API by loading gh.el.
better summary line in gh.el and gh group doc-string

It is more important to tell potential users what the package is about
than that gh.el is the entry point library of the package.  Based on
it's filename that is obvious anyway.
Merge pull request #10 from tarsius/master

better summary line, gh group in gh-common.el
platoon queue should be logging
Most important commit described in Changelog.
Sprites and (currently broken) player movement.
Added Git Ignore.
Merge branch 'master' of github.com:snez/watair

Conflicts:
	.gitignore
	scripts/watair/watair.js
	scripts/worm/wormapp.js
dm cache: support blocksize that is not a power of 2

(IIUC the cache policies do not assume cache_size is a power of 2)
different src directory and .ghci
Tweaked readme section about AMD
Add cutest to gem manifest.

The following should now work:

    git clone git://github.com/soveran/ost.git
    cd ost
    gs init
    dep install
    rake test

Previously it complained about cutest missing.
Fix bug with redis connection handling.

Previously, it was just using the default connection
of `localhost:6379`, regardless if you setup your
app with an `Ost.connect`.

With this change, the redis object is passed properly
to the constructor of the Queue object.

credits: thanks to @conanbatt for spotting this.
Start at support for out-of-tree builds.
Converted all OpenCL level{0,1,2} programs to use automake.
Made MPI builds condition in automake files.
Converted to use pre-defined makefile variables and targets.
Merge branch 'master' of https://github.com/spaffy/shoc
Converted CUDA programs to automake.
First full implementation of automake-based build.
Full first implementation of automake build process.
Added Makefile.in files for new automake build system.
Added automake support for building manual.
Fixed in-tree build problems for MPI contention programs.
Fixed build problem with MPI contention benchmarks.
Updated Makefile.ins with newer automake.
Added some missing autotools support files.
Added tools and docs to installed files.
Added a check for existence of executables.
Merge branch 'master' of https://github.com/spaffy/shoc
Updated configure and build documentation.
Updated SHOC version number.
Final set of changes for automake build support.
Add: experimental dropbox handler for final hand in. No libs or supporting code committed.
Remove: faulty commit of dropbox experiment
Add: #134 loading message dialog when entering media selector
Merge branch 'hotfixes' into development
Add: #135 .mailmap file
Fix: Added missing javadoc and got rid of some old excess junk
Add: missing javadoc for the class and testAddRouteAndLaunchSettings method
Merge branch '65-ShowResultsForARoute' into development
Merge branch 'hotfixes' into development
Fix: #135 Corrected .mailmap
Merge branch 'hotfixes' into development
Add: #65 Units for the results displayed
Change: filename on readme
add qunit for project
add some unit for util.core.lang
bin增加对单元测试的支持，初始化生成单元测试文件/util.core.array单元测试加入/util.core.string部分单元测试加入
util.core.date unit
util.core.date unit
util.core.date unit完成；增加jsCoverage部分代码
重定义初始化脚本，用commander来规格化参数
初始化模块脚本重构完成，并对原来代码目录结构进行响应调整
添加jscoverage支持
暂时没找到jsCoverage配合seajs下的qunit方法，先去掉
拖拽增加position为fixed的支持以及drop时revert，预留sort模块
拖拽模块增加解除拖拽监听方法
拖拽支持position为static方式，同时修复在父节点具有position时候的bug；加入seajs plugin：map以支持远程调试
drag模块修复容器范围形式下的margin导致的误差
drag支持node是function形式，sort部分基础功能加入（connect模式和disable模式未完成）
拖拽增加拖拽前的切面以方便动态阻止拖拽；sort增加功能，非connect模式下基本完成
sort connect基础功能
sort当container中元素为0时候的处理
sort模块完成connect功能
将drag的部分AOP转成event事件
There is no more promo gem to depend on
[api] Correct errors deletion of permalink in products_controller_spec.rb
Update 'shipped_at' after a shipment has shipped

With improvements from Ryan Bigg:
  - Moved sending shipping email out to own method so it can be stubbed easily
Returning during in winning condition check immediately instead of at the end of the function.
Added (setq-default c-basic-offset 4) to my ~/.emacs and reindented all .c files.
null and string literals now exist, so add tests
Print bad number values (Inf,NaN) "correctly".
Bugfix for expanding objects.
Make the '+' operator merge objects.
Make a main program that doesn't spam debugging info.
When comparing two objects for equality, we don't need to recurse
into e.g. array elements if the two objects are the same array.
Make jv_invalid() first-class values capable of holding an error.
Plug a memory leak in jv_object_merge
jv_string_fmt (create printf-formatted JSON strings)
Sensible error messages when a silly addition is performed.

Fix a test to no longer perform an invalid addition.
String concatenation.
Subtraction - as expected for numbers, ruby-style set diff for arrays.
Multiplication and division operators.

It is an error to use these on anything but numbers. Maybe later
implementing python/ruby-style ("a" * 100) might be handy.
String -> number conversions with "tonumber".
Add week01 lecture notes.
doing something wrong
fixing regex like a boss
Add Play
New guifont settings for new workplace
Fixing up when target_self is used
evaluate Pauli matrices product
fixes paulialgebra whitespaces
pauli algebra fix product
pauli algebra doc spelling fix
Merge pull request #1250 from alxspopov/paulialgebra_patch

Paulialgebra fix
Removing styleparser and UI components
IN, MAX追加
Merge branch 'master' of https://github.com/syupein/oct.git
added readme file that begins to explain the folder structure.
add favorites
add comment
rating
temp
temp
loc cells
favorites
Optimizing cython code. Fixed a bug in bedGraph peak calling.
Add minimum chars option to start completion
Merge pull request #2 from yosisa/yaicomplete-minimum-chars

Add minimum chars option to start completion
Removed pdfbox-1.7-src
Complete sHTML test
Fix code formatting
Add sAuthorization test
Add sGrammar unit tests
Add sNumber unit tests
Add sResponse code coverage test
Add code coverage ignore comments
Better handling of callbacks
Remove old comment
Fix for Issue #106
消し忘れ部分の削除
Twitter認証後のユーザ情報登録処理を追加
models.rbを分離し、./lib/models/＜＜foo＞＞.rbに設置
Updating TOC to 40300
Weekly build 4.3.0.44-Beta
Update changelog for 4.3.0.44-Beta
Merge commit '4.3.0.44-Beta'
Fixes for functions renamed in MoP
Need to handle case where sometimes icon is nil
No more ranged weapon slot in MoP
MoP renumbered Vigilance
Missed one GetNumRaidMembers()
Warrior vigilance is now a short-lived situational effect
Training no longer exists; spells are autolearned
Merge branch 'master' of git://github.com/hughescr/Cork
Remove an unnecessary select
LAWL TAINT!
No more crusader aura
Pally auras are no more
Seals are now only a "stance"
adding sqlite-3.7.7.1
adding mysql-5.5.15
adding xulrunner-1.9.2.25
adding Net-XMPP-1.02