JQuery tree view element new class .

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9712 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
1)Added  a label field in Tree so that should be shown as a label not the name. 
2)Created an Linkable tree with a String url as a 3rd argument in the constructor.  

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9719 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
* In search of jQuery bug, made code of RepeatingPanel a bit more readable.
* Made Litter Plugin store values filled in during genotyping, so they don't get lost when user adds or removes a Geno column.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9721 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Working on authentication and session handling for (xQTL) R API.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9722 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
* Added simple, but effective login/logout menus to the 'Find' or 'Download' API.
* Resolved other bugs/issues in Find API although paths remain tricky: easiest way is to map with a trailing slash ('api/find/') so links will always point to a sublocation of this path instead of overriding 'api/find' to 'api/myrequest'.
* Authenticator service no longer invalidates sessions on logout but sets the login credentials in the session to null. This is more elegant and allows for a logout message.
* Find API tested with authentication and downloading via R API, and it works!! :-)

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9723 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
* Added jQuery multiselect plugin
* Added possibility to turn you SelectMultipleInput into a jQuery multiselect
* Made 'gene name' box in Add Animal plugin a jQuery multiselect; works like a charm!
* TODO: same for 'gene state'

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9726 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
JQuery Splitter introduced. 

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9728 42de9c89-b41c-0410-9fa9-f33e7b6bda7a


git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9730 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
* Fixed selection of only one gene (DivPanel's setValuesFromRequest() messed up value of MultipleSelect by changing it from a List<String> to a String)
* Fixed adjustment of number of gene state boxes when selection changes

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9734 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Added an authentication GUI service for all browser-accessed MolgenisServices except the regular web GUI. Handles authentication in combination with a simple menu structure which guides and informs the user about his/her authentication status. If you want to add login/logout and all security related checks in your MolgenisService, be sure to use handleAuthentication(MolgenisRequest req, MolgenisResponse res) as explained in the Javadoc.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9735 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Started to port and tune up the MolgenisUploadService, a.k.a. 'add' API. There seems to be a part of code missing though: in step 2 there is no CSV import form.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9736 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Tune up of Excel importer: removed unused variables in generator, and fixed a bug where sheets that would be ignored still showed up as importable sheets.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9738 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Implemented a draft of the new 'QTL Finder' tool.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9739 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
CsvReader is a TupleReader

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9746 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
CsvReaderListener is a TupleReaderListener

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9747 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
Addition of DatabaseReader as variant of TupleReader so you can treat a database just as another csv file.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9748 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
exposed batch size. TODO: bring in central constants class.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9749 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
exposed batch size. TODO: bring in central constants class.

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9750 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
bugfix: links in the footer

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9759 42de9c89-b41c-0410-9fa9-f33e7b6bda7a
bugfix: links in the footer

git-svn-id: http://www.molgenis.org/svn/molgenis/trunk@9760 42de9c89-b41c-0410-9fa9-f33e7b6bda7a