DOC: Modify ScalarImageToTextureFeaturesFilter comments.

Author: dzenanz@gmail.com
Updating docs hyperlinks

Change-Id: I8277fee9675725f183dd8412faf77be60061fb88
COMP: fix comparison between signed and unsigned with cast

Change-Id: I556477f585f5bb62ecfaf5b728ce09912a8246cd
Merge topic 'EditDoxygen_ScalarImageToTextureFeaturesFilter_1328607445'

de52631 DOC: Modify ScalarImageToTextureFeaturesFilter comments.
ENH: Simplify local Git hook chaining

Add ".hooks-config.bash" to tell the main hooks to chain to our hooks.
Remove the hard-coded "git config" hook chaining.  The new approach is
better because the chaining configuration is versioned with the hooks
that it chains.

Change-Id: I4a3add10395d1113611394d40d2efe9b5210dd4b
BUG: Fix ITK prepare-commit-msg hook to not erase branch name

Prepend the ITK commit message instructions to the "On branch" line
instead of replacing it.  Also support the "Not currently on any branch"
case during rebase.

While at it, remove the "Mantis" reference because ITK no longer uses
Mantis for issue tracking.

Change-Id: Iabc1d4df4b6420156c21b50e2d21292917acc496
Merge topic 'itk-local-hooks'

55db0fd BUG: Fix ITK prepare-commit-msg hook to not erase branch name
9b6be0e ENH: Simplify local Git hook chaining
Merge topic 'AddDebugInfoToSimpleImageRegTest'

8f87a72 BUG: Add debug info to SimpleImageRegistrationTest
Merge topic 'FixSignedUnsignedWarningVotingBinary'

85fb579 COMP: fix comparison between signed and unsigned with cast
KWSys Nightly Date Stamp
COMP: global Clone() architecture compatible with java

A Clone() method was recently introduced for the Transform classes,
but this implementation is unfortunately incompatible with java,
because the implementation in each transform returns a different
type than in its superclasses.

Several other implementations of Clone() methods are used in the toolkit, so
there is definitely a need for that.

This change provide a global implementation of the Clone() method for
all the subclasses of LightObject. As in the current implementation
dedicated to transforms, it returns the actual type of the cloned
object. Because the method is available in LightObject and it
subclasses, the current java infrastructure can be used to reimplement the
Clone() method in all the subclasses of LightObject in a java
compatible way.

Change-Id: I92a558fe7ad8e13e219802b92ca68f96d101972e
PERF: Switched order of if-statement and for-loop in DetermineRegionOfSupport

And also rewrote the function a little bit for readability.

Switching the order of the if-statement and the for-loop showed
performance enhancements on a win7, VS2008 setup. On Linux Ubuntu
with gcc 4.4.3 no performance change was noticed: apparently gcc
is quite smart.

https://itk.icts.uiowa.edu/jira/browse/ITK-2889

Tested within the elastix software to give identical results.
All ITK tests still green:
http://www.cdash.org/CDash/viewTest.php?buildid=1988027

Change-Id: If638e0ee5036833b9495248f5a642fa1f80792d7
BUG: remove SwigPyIterator/PySwigIterator

It seems to have been remove in newer swig versions.

Change-Id: Ib406524e1153d514d9e34c5f625593593fc4dc80
BUG: SimpleImageRegistrationTest - remove versions 2 & 3

These were added to try and help debugging dashboard failures.
But it was a bad idea. They're not helping, and are filling
up the dashboard with red.

Change-Id: I26124dca0356cc071f567fef115d78c81cbdc702
Merge topic 'FixPySwigIterator'

8442c7f BUG: remove SwigPyIterator/PySwigIterator
Merge topic 'AddDebugInfoToSimpleImageRegTest2'

f9723e6 BUG: SimpleImageRegistrationTest - remove versions 2 & 3
BUG: itkSimpleImageRegistrationTest - more debug changes

Add output of number of threads used to check if different
results may be due to threading inconsistencies.
Add Test2 that tries single-threaded, but skips
reference-image check since that fails even on original
dev machine.

Change-Id: Iad675817a051bccadc73eb8a3f5ae3af96eaca65
Merge topic 'ModifySimpleImageRegTestDebugInfo'

50563af BUG: itkSimpleImageRegistrationTest - more debug changes
DOC: Modify IntensityWindowingImageFilter comments.

Author: matt.mccormick@kitware.com
IntensityWindowingImageFilter see also RescaleIntensityImageFilter.

Change-Id: I0948c96cc54b562802b15d49b1de22395955680f
KWSys Nightly Date Stamp
BUG: itkSimpleImageRegistrationTest - still more debug changes

Add itkSimpleImageRegistrationTest3 and in it, change smoothing
sigma for Level 2 of registration to see how the results then
compare to passing builds.

The failing tests diverge only slightly from baseline in levels 0 and 1,
but then more significantly in level 2. Smoothing sigmas per level
in the original test are [2, 1, 0].

Change-Id: Ifda6db9fb1c07a6233268de4d65356518f12f889