Update py-networkx to 1.6.
Based on PR 46506 by Wen Heping.
* let to register egg-info.
* marked as incompatible with python 2.5, as new features in 1.3.
  but not marked as compatible with 3.x, one file will not be compiled well
  both 3.1 and 3.2.

Lease Log:

Networkx-1.6

Release date: 20 November 2011

Highlights

New functions for finding articulation points, generating random bipartite
graphs, constructing adjacency matrix representations, forming graph products,
computing assortativity coefficients, measuring subgraph centrality and
communicability, finding k-clique communities, and writing JSON format output.

New examples for drawing with D3 Javascript library, and ordering matrices with
the Cuthill-McKee algorithm.

More memory efficient implementation of current-flow betweenness and new
approximation algorithms for current-flow betweenness and shortest-path
betweenness.

Simplified handling of "weight" attributes for algorithms that use
weights/costs/values. See Version 1.6 notes and API changes.

Updated all code to work with the PyPy Python implementation http://pypy.org
which produces faster performance on many algorithms.

For full details of the tickets closed for this release (added features and bug
fixes) see: https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.6

API Changes

See Version 1.6 notes and API changes:
	http://networkx.lanl.gov/reference/api_1.6.html

Networkx-1.5

Release date: 4 June 2011

For full details of the tickets closed for this release see: https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.5

Highlights

New features

	* Algorithms for generating and analyzing bipartite graphs
	* Maximal independent set algorithm
	* Erd?s-Gallai graphical degree sequence test
	* Negative edge cycle test
	* More memory efficient Dijkstra path length with cutoff parameter
	* Weighted clustering coefficient
	* Read and write version 1.2 of GEXF reader format
	* Neighbor degree correlation that handle subsets of nodes
	* In-place node relabeling
	* Many `weighted' graph algorithms now take optional parameter to use
	  specified edge attribute (default=`weight') (ticket 509)
	* Test for distance regular graphs
	* Fast directed Erd?s-Renyi graph generator
	* Fast expected degree graph generator
	* Navigable small world generator
	* Waxman model generator
	* Geographical threshold graph generator
	* Karate Club, Florentine Families, and Davis' Women's Club graphs

API Changes
See Version 1.5 notes and API changes
	http://networkx.lanl.gov/reference/api_1.5.html

Bug fixes
	* Fix edge handling for multigraphs in networkx/graphviz interface
	  (ticket 507)
	* Update networkx/pydot interface for new versions of pydot
	  (ticket 506), (ticket 535)
	* Fix negative cycle handling in Bellman-Ford (ticket 502)
	* Write more attributes with GraphML and GML formats (ticket 480)
	* Handle white space better in read_edgelist (ticket 513)
	* Better parsing of Pajek format files (ticket 524) (ticket 542)
	* Isolates functions work with directed graphs (ticket 526)
	* Faster conversion to numpy matrices (ticket 529)
	* Add graph[`name'] and use properties to access Graph.name (ticket 544)
	* Topological sort confused None and 0 (ticket 546)
	* GEXF writer mishandled weight=0 (ticket 550)
	* Speedup in SciPy version of PageRank (ticket 554)
	* Numpy PageRank node order incorrect + speedups (ticket 555)

Networkx-1.4

Release date: 23 January 2011

New features
	* k-shell,k-crust,k-corona
	* read GraphML files from yEd
	* read/write GEXF format files
	* find cycles in a directed graph
	* DFS and BFS algorithms
	* chordal graph functions
	* Prim's algorithm for minimum spanning tree
	* r-ary tree generator
	* rich club coefficient
	* NumPy matrix version of Floyd's algorithm for all-pairs shortest path
	* read GIS shapefiles
	* functions to get and set node and edge attributes
	* and more, see https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.4

API Changes
	* gnp_random_graph() now takes a directed=True|False keyword instead of
	  create_using
	* gnm_random_graph() now takes a directed=True|False keyword instead of
	  create_using

Bug fixes
	* see https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.4

Networkx-1.3

Release date: 28 August 2010

See: https://networkx.lanl.gov/trac/timeline

New features
	* Works with Python versions 2.6, 2.7, 3.1, and 3.2 (but not 2.4 and 2.5).
	* Minimum cost flow algorithms
	* Bellman-Ford shortest paths
	* GraphML reader and writer
	* More exception/error types
	* Updated many tests to unittest style. Run with:
	  "import networkx; networkx.test()" (requires nose testing package)
	* and more, see https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.3

API Changes
	* minimum_spanning_tree() now returns a NetworkX Graph (a tree or forest)

Bug fixes
	* see https://networkx.lanl.gov/trac/query?status=closed&group=milestone&milestone=networkx-1.3
Updated math/py-networkx to 1.6
remove buildlink3.mk, this package have no contents to buildlink.
Update py-gmpy to 1.15.
Based on PR 46507 by Wen Heping.
* let to register egg-info.
* all files in distfile are not DOS style EOL oter than Windows related files,
  so remove extract option for ZIP.

GMPY 1.15 is a bug fix release. The following bugs were fixed:
* Reference counting leak in divmod(x,0).
* Fatal crash in remove(x,1).
* Discontinue use of custom memory allocator. (Fixes compatibility with Sage.)
* Allow up to base-62 integer conversion.
Updated math/py-gmpy to 1.15
Update p5-Net-Server to 2.002, for full IPv6 support.
PR 46515 by Francois Tigeot.

2.002  May 31 2012
        - Make HTTP output header parsing more consistent - and catch more errors
        - Add exec_cgi and exec_trusted_perl methods to HTTP
        - Add bugfix for ipv=>"*" combined with UNIX sockets. (Mark Martinec)
        - Fix the SSL_test.t to use exit rather than quit so the parent departs

2.001  May 30 2012
        - Bug fix wrong usage of File::Temp::tempfile.
        - Fix HTTP_COOKIES to be HTTP_COOKIE
        - Handle multiple header values better in HTTP
        - Add Log::Log4perl logging courtesy of TONVOON@cpan

2.000  May 30 2012
        - Sorry for the amazingly long delay.  This release represents change to much of the code base.  Future patch submissions should be more promptly handled

        - Bring Net::Server::Proto::SSL back.  It is now fully functional under all scenarios, including IPv4 and IPv6
        - Change Proto interface to allow passing more information.  This represents an internal API change.
        - Updates to the HUP mechanisms to make sure we rebind all types of ports correctly.
        - Add IPv6 integration via ::1 style addresses as well as the ipv configuration parameter (Mark Martinec)
        - Added graceful shutdown (Tatsuhiko Miyagawa)
        - Added hot deploy via TTIN and TTOU (Tatsuhiko Miyagawa)
        - Internal code retidying
        - Finish out support for connecting to ports by service name
        - Don't loose track of fork and prefork children on a hup - make sure to actively wait them off
        - Correct accept to take a classname, and optionally be called in array context
        - Cleanup numerous configuration issues.
        - Added sig_passthrough option to Fork, PreFork, and PreForkSimple servers allowing for arbitrary signals to propagate to children
        - Add syswrite/sysread support to SSLEAY (Sergey Zasenko).
        - Add PSGI module.
        - Many small accumulated bugfixes.
Updated net/p5-Net-Server to 2.002
Update pear-Net_LDAP2 to 2.0.12.
per maintainer update request by PR 46517.

ChangeLog:

2.0.12
Changelog:

* inmproved performance with large search results
* Fixed some minor issues with Net_LDAP2_Filter and Net_LDAP2->dnExists()
* Added NOT filter to Net_LDAP2_Filter::create() so negating is more easily now

2.0.11
Changelog:

* (doc issue) Fix for #17861: Missing komma in example
* Fix for #18202: Adding attributes to a Fresh Entry saving and laterly updating
  fails

2.0.10
Changelog:

* Added schema handling methods to make schema checks more easily accessible
* Bugfix for #17245. The check in the code was not working properly. Schema
  checking is considered the users responsibility.
  If now an attribute is requested that is not set at the entry, an empty string
  is returned.
* Bugfix for #17770. Some Net_LDAP2 files were included with relative path
  ("Util.php"), not absolute ("Net/LDAP2/Util.php").
* Bugfix for #17314. LDIF support for attributes with modifiers ("attr1;binary").
Updated net/pear-Net_LDAP2 to 2.0.12
Import BSD::arc4random from wip. From DESCR:

This module provides a Perl API for the BSDs' arc4random(3) suite
of functions and adds a few high-level functions, such as the new
arc4random_uniform(3). The Perl functions are ithreads-safe (only
if threads::shared is required). Scalars can be tied to this pak-
kage, yielding uniformly distributed random numbers with an arbi-
trary upper bound on read access, contributing to the RC4 entropy
pool on write access. An exported global $RANDOM variable returns
15-bit unsigned random numbers, from [0; 32767], similar to mksh.
Furthermore, Perl's internal PRNG is seeded with entropy obtained
from the arc4random generator once on module load time.
+ p5-BSD-arc4random
Added security/p5-BSD-arc4random version 1.50 [bsiegert 2012-06-02]