Fixed typo.
Cobertura code coverage report generation with gcovr added.
SOme small fixes.
White space fixes.
This is release version 5.3.0.

Squashed commit of the following:

commit 898329fc2815068adbf5b939d057f9b1fead5854
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Apr 25 09:55:50 2012 +0200

    Bumped version number to 5.3.0

commit 7e4617a89adc8d3b450c1f1e3bfd6357e82a1108
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Apr 24 12:17:44 2012 +0200

    fixed warnings and optimised treemodel for meshes a little bit

commit 1495e376738c6ad1d6b9033577370c25921a79e9
Merge: 1377212 f5785ce
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Apr 24 11:22:44 2012 +0200

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit f5785cedc5acce373bfb42157d19178b18279be2
Merge: ebb2de2 983cb25
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Apr 24 12:06:55 2012 +0200

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

    Conflicts:
    	Qt/Gui/mainwindow.cpp

commit ebb2de2a3dcd35afc40fef25bafe2f9142c4ec52
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Apr 24 11:45:54 2012 +0200

    class GMSHAdaptiveMeshDensity:
    - added method getSteinerPoints()
    - added method getQuadTreeGeometry() in debug mode - inserts the QuadTree object into the GEOObjects instance

    class GMSHPolygonTree
    - added method writeAdditionalPointData()

    class Polygon:
    - substituted method getIntersectionPointPolygonLine() by method getNextIntersectionPointPolygonLine()

    class QuadTree:
    - removed some commented code (method getQuadTree())
    - added method getMaxDepth()
    - added a getter method for depth of QuadTree node

    class MeshGrid:
    - added method createMeshGridGeometry() in debug mode

    class CFEMesh:
    - added getter method for attribute _mesh_grid that is an instance of class MeshGrid

    files MathLib/MathTools.{h.cpp}
    - inlined the sqrDist() function

commit 13772126635febfee03dd19ada3b1b5bd8b0ed40
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Apr 24 11:20:57 2012 +0200

    optimised meshsource a bit (meshes load faster now)

commit 983cb2595a772e3a455a82d069a23dadd3ca1bfa
Merge: 72e2912 451c841
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Apr 23 18:14:05 2012 +0200

    Merged Dima's changes.

    Merge commit 'refs/merge-requests/1' of git://vismac02.intranet.ufz.de/ogs5/sources into merge-requests/1

    * git://vismac02.intranet.ufz.de/ogs5/sources:
      Comment on possible SEGV.
      Emit warning when creating surface from open polyline.
      Correct function names in dbg output.

    Conflicts:
    	FileIO/OGSIOVer4.cpp

commit 72e2912d8cea3b72bbd65a5d2e880fe5030f05ac
Merge: c1d018d 7f85f7a
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Apr 23 17:47:00 2012 +0200

    Merge remote-tracking branch 'upstream/master'

    * upstream/master:
      git-svn-id: https://svn.ufz.de/svn/ogs/trunk/sources@10682 3895a583-e809-0410-9bb6-aa9463026377
      a few fixes. some number adjustments will follow.
      retry.
      switch to direct curve derivative, rather than iterative.
      small changes. allow dpcdsw=0 for richards. correct ouput schemes for secondary vars with two time slots.
      git-svn-id: https://svn.ufz.de/svn/ogs/trunk/sources@10664 3895a583-e809-0410-9bb6-aa9463026377
      thermal expansion was off! also fix to MFP outputs. Clarity for screen outputs with RSM.
      fix to PP. Possible fix to PI.
      fixes pcs without time control
      Fixes momentum (past error) and mass tran for multiple components.
      Include the FEMEnums header instead of forward declaring an enum.
      switched error methods enums to .num.
      quick bugs.
      version 5.2.09

    Conflicts:
    	FEM/rf_num_new.h
    	FileIO/MeshIO/LegacyVtkInterface.cpp

commit 612abcbe9c6452b51dbbda5c41646105c641ebb3
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Apr 23 13:05:00 2012 +0200

    moved MshLayerMapper into MSH dir

commit c1d018db2d960ee1e590deff7119071892c25a8c
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Apr 23 10:21:51 2012 +0200

    added missing files

commit 9fa363bb9b66013411b284fa995204429df35ab0
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Fri Apr 20 16:49:08 2012 +0200

    included file converter into OGS-Tools menu

commit 94d49c03881503b7722f67ddc8f562826401e1d7
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Fri Apr 20 12:33:48 2012 +0200

    fixed index error in fem condition visualistion

commit ed99be8234971d02228b5840c115655c7212a01a
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Thu Apr 19 18:09:44 2012 +0200

    fixed call sequence in FEMConditionSetupDialog

commit 754bfdc64410b0a56d8ce9dd10b6c616603d6ff4
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Thu Apr 19 17:37:42 2012 +0200

    corrected direction of surface normals for prism elements in msh layer extrusion

commit b721c022956ce3a8bb9e7beec8810b09836d1ff8
Merge: efac021 cd79a64
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Apr 18 17:44:07 2012 +0200

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit efac0211fed5c7553df1965d2c9651a1455a520e
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Apr 18 17:43:47 2012 +0200

    FEMConditions can now be edited from GUI

commit 530fa8d2adccd61aca1f8c38826ff81eddf18f30
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Apr 18 12:48:13 2012 +0200

    added functionality and dialog for setting up arbitrary linear conditions

commit cd79a64caa904310bf3a0b3cccdfe673e4752b2c
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Apr 17 16:37:52 2012 +0200

    another change due to test point in polygon functionality

commit f49c4c2f50d3739bd4552066a093e594c9c674cb
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Apr 17 16:26:25 2012 +0200

    due to the modification of the test criterion for the point in polygon test it was necessary to modify the TestPointInPolygon program

commit 94efdac7ec75e9fe3349b76bf70ecc2bbd778a61
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Apr 17 16:11:46 2012 +0200

    removed old code from GMSHInterface

commit 8bbbddd98cbf15998e8d2def8786c0105b7d7d96
Merge: 0521b47 f6a1c2e
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Apr 17 15:55:54 2012 +0200

    Merge branch 'master' into GMSHInterface

    Conflicts:
    	FileIO/XmlIO/XmlGmlInterface.cpp
    	UTL/MSHGEOTOOLS/mapGeoToDEM.cpp

commit f6a1c2ee85ac25c10189f16a023801c6591c9be0
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Apr 17 15:33:21 2012 +0200

    fixed a small compiling bug

commit f32766c69ce1d224643bd4f5c1b344a6562fff94
Merge: 9a4e019 d8cf171
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Apr 17 15:15:32 2012 +0200

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit 0521b47c00718646b0d387d5e2878829125f6af3
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Apr 17 15:09:10 2012 +0200

    - correction of GMSHPolygonTree::insertPolyline
    - added documentation to class GEOObjects
    - added documentation to class Polygon
    - added method getAllIntersectionPointsPolygonLine() to class Polygon
    - removed some debug output from method Polyline::insertPoint()

commit d8cf171633f32114236f3f2cc0a5490bd7cd876b
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Apr 17 11:22:14 2012 +0200

    fixed casting error in linux

commit 1e4d40681fa4e0f1c00571807cc60c2ba236661e
Merge: 4064f83 8572862
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Apr 17 11:12:28 2012 +0200

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit 4064f83e1df70b35e001dde8a5dd33aa99e948b5
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Apr 17 11:12:07 2012 +0200

    direct conditions are now integrated into file converter

commit 857286272fa34274696ab08013f06573c4bd1a9c
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Mar 30 13:41:25 2012 +0200

    README code indention.

commit f383fda08a9dfa960a0c5ed88d8a3577e76b6fae
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Apr 16 17:59:31 2012 +0200

    direct source terms from cnd-files are now pretty seamslessly integrated, direct st's from ascii files still works (lots of changes while reading) but requires a lot of extra code and should be removed asap

commit 451c841de0ace2b602c2d650e6588c3df079a64e
Author: Dmitri Naumov <dmitri.naumov@ufz.de>
Date:   Mon Apr 16 11:44:33 2012 +0200

    Comment on possible SEGV.

    Signed-off-by: Dmitri Naumov <dmitri.naumov@ufz.de>

commit b15002811fc4768c143dcec12626962b45bf614d
Author: Dmitri Naumov <dmitri.naumov@ufz.de>
Date:   Mon Apr 16 11:43:53 2012 +0200

    Emit warning when creating surface from open polyline.

    Signed-off-by: Dmitri Naumov <dmitri.naumov@ufz.de>

commit 22f33cd29b6acbd9670098869825c4b6ad3c2d68
Author: Dmitri Naumov <dmitri.naumov@ufz.de>
Date:   Mon Apr 16 11:43:32 2012 +0200

    Correct function names in dbg output.

    Signed-off-by: Dmitri Naumov <dmitri.naumov@ufz.de>

commit 65eb0e02f739124a15515ec512bb0152d5624d59
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Apr 16 12:31:28 2012 +0200

    changed structure of distribution-storage in FEMCondition

commit 6fda771d82ef866b1bf6ef0503b52c0a5bbcaedf
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Fri Apr 13 14:59:51 2012 +0200

    added cnd2bc conversion to OGSFileConverter

commit 3fee6d046ba77391afc3f5702358e24070236f11
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Fri Apr 13 14:52:03 2012 +0200

    backup of daily work - still errors within the code

commit eb74a5afe4760db54fe0a59617c83c3347cf6a9e
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Fri Apr 13 11:50:54 2012 +0200

    fixed error management in XmlGmlInterface - writer

commit 9a7f91ccb536dc2546c325eec86f38ac38baf3c2
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Fri Apr 13 11:35:48 2012 +0200

    added ASCII-Conditions to XML-Conditions Conversion to ConversionTool; added/extended error management in GeoIO

commit 9b28b754bac7ff68c8f9c1d166d7fefbf89e4f7a
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Wed Apr 11 16:34:57 2012 +0200

    backup of work

commit c09619c33971b3da6acf4be6d110dcf6eac87d9f
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Apr 4 17:26:35 2012 +0200

    started implementation of OGSFileConverter (incl. GUI) for conversion of xml-format to legacy formats and back. geometry conversions are implemented in both directions, condition conversions are still missing.

commit 9a4e019856c72cce1d0eab1d857a02bdb1ef614e
Merge: a8671b1 b6c984e
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Wed Apr 4 12:30:13 2012 +0200

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

    Conflicts:
    	FileIO/MeshIO/OGSMeshIO.cpp

commit 1420f6b0f31039502b9a737ea99e85674197f594
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Wed Apr 4 12:26:00 2012 +0200

    rewrote GMSHInterface - still not complete (inserting stations is missing) - backup

commit b6c984e24976c7ad4e6b30469ffd05d25a39c9a7
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Apr 3 12:59:37 2012 +0200

    re-implemented generation of mapped multi-layer meshes and removed old method; implemented method to get surface-mesh from a multi-layer-mesh; changed input and output of distribution information in XmlCndInterface (part of ongoing changes for universal handling of fem-conditions)

commit 3c1170979e360820cf0a85955a4e5cd3ebe8c028
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Mar 28 16:53:45 2012 +0200

    removed changes specific to the rappbode-demo

commit b2671cdd375dc16df8b3dea5ab620c1bce454042
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Mar 28 11:28:10 2012 +0200

    more adaptions for rappbode-simulation-demo

commit fea8c8904d33364f63abe484010faa7710deca24
Merge: 31fb422 4a96f39
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Mar 28 08:31:53 2012 +0200

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit 31fb4227a47f7f1f241a50fe25172f4fdadc9a3b
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Mar 28 08:31:38 2012 +0200

    fixed some performance issues (pvs-studio), special visualisation changes for bode-boatpath

commit 4a96f39d7589cf396b0485110d3b207d4b862f57
Merge: 444f604 2624e59
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Mar 26 11:33:34 2012 +0200

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

    * 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources:
      removed last remnants of old mapping code, fixed initialisation issue in FEM-Cond-Setup

commit 444f604aea5ad92467beca8dc077478d5e290ab3
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Mar 26 11:33:21 2012 +0200

    Fixed building of utils on Linux.

commit 2624e59cd05f3b3efb5d189eb63ed2f0d69dca27
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Mar 26 10:27:37 2012 +0200

    removed last remnants of old mapping code, fixed initialisation issue in FEM-Cond-Setup

commit eb6e3dccc0744a08131a000edcd9a36c0777fd25
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Mar 21 09:26:56 2012 +0100

    integrated new interpolation scheme into MshLayerMapper

commit efd9aa53dba0c6a66a6cf3a941083a2dd8216cff
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Mar 20 14:00:35 2012 +0100

    GL_COMBINE is not available on Windows, GL_MODULATE gives the same results.

commit 3715583bcefd3bc462f9b9376062a118b0a2ec53
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Mar 20 12:26:13 2012 +0100

    One more missing include.

commit 9aee41d450810bde2fed9bc64b4d1c90a59ff490
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Mar 20 12:07:14 2012 +0100

    Added missing include.

commit 760340711a8ec416577d7ee0cce361ba575283ff
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Mar 20 11:20:02 2012 +0100

    OpenSG-exported textured objects are now correctly lit.

    Set EnvMode to GL_COMBINE in vtkOsgConverter's texture chunk.

commit 1089d95ca25c41e9e65bb1ea66d0c1a318a78f92
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Mar 19 11:11:39 2012 +0100

    Added a comment how to apply default colored lut to a grayscale texture.

commit cff2ff75b91f5bef7bcc209717751a619fe317aa
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Mar 14 15:16:03 2012 +0100

    Cloning the lut is not needed in the ParaView OpenSG Exporter.

commit 0b3e51128518ea69a8cd3fd5e073cc2681bd0cba
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Fri Mar 16 11:41:24 2012 +0100

    fixed an issue with TIFF palette selection; added method for assigning borehole profiles to station objects

commit 5e2be90424a7ee2a98153cdce6251b685839784f
Merge: 1169ad1 4b1207b
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Mar 14 10:35:20 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit 1169ad1d5dd6b6c8ecbd36a99ea2e49867434e5e
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Mar 14 10:35:04 2012 +0100

    updated mapGeoToDEM-Tool to also map station data

commit 4b1207b43392e63c6e7ea69008c63e331fb00497
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Mar 13 12:09:57 2012 +0100

    Fixed overriding of compiler flags on not debug builds.

commit c3c9b57e28bec625e5da33a2c2278d2e11055c68
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Mar 12 16:54:17 2012 +0100

    Add lut now remembers its directory.

commit 26ba0869bd9f537e91b52ff1d81cc771c73ffd3f
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Mar 12 16:46:29 2012 +0100

    Fixed lut bug in OpenSG converter.

commit 5042591c6a581a8c18b8841aa98e86c242ede51e
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Fri Mar 9 12:43:27 2012 +0100

    save work - version of GMSHInterface does not work!

commit 3cff111140a618c832a0daa16ce94c5d2dff4680
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Thu Mar 8 18:13:22 2012 +0100

    fixed issue with precision in mesh-output; added GridAdapter Copy-Constructor; added extendable removeMeshNodes tool to remove nodes and adjacent elements according to given keywords

commit d456c0f844d057a78fe77a373935a1de330cf2d6
Merge: 83c8eb2 a8671b1
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Mar 8 12:30:51 2012 +0100

    Merge branch 'master' into GMSHInterface

commit a8671b18ca1dea76c0d0ce92e87b4c7f76dc9f3a
Merge: 038b128 54ec3a4
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Mar 8 12:30:26 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit 038b128fc47af610d3c92715be97f68d43345025
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Mar 8 12:29:02 2012 +0100

    changed the output precision for writing mesh node coordinates
    inserted some debug code in equation_class.cpp

commit 54ec3a4746621468714b71d25a27e70461754a26
Merge: f67be01 dd0f8f9
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Mar 6 18:20:11 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit f67be017cb5dfb12f17b22b16272801407cef0db
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Mar 6 18:19:08 2012 +0100

    fixed array initialisation error for mesh-construction from double array (i.e. netcdf)

commit 09cdd146156fa8614da399dc2dbca90852dcaa3a
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Mar 6 15:20:57 2012 +0100

    fixed index error in coordinate-output for mesh elements

commit 20124e4d67818f828329476d4900a3e476cc4db5
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Mar 6 15:11:41 2012 +0100

    fixed index error for strat-index in borehole-source-object

commit 83c8eb211c5ac1e60d139907da14ab50aa7a5604
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Mon Mar 5 16:07:52 2012 +0100

    some improvements in GMSHInterface - not yet finished - under very heavy construction!

commit dd0f8f9223c6932d3d820438f4de5e99f77e28e3
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Mar 5 12:09:03 2012 +0100

    Added a directory for every file type which is loaded to QSettings.

commit 9042ca6f2e2a7cf167b4eba0fe39eae39a7f7cb8
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Mar 5 11:57:25 2012 +0100

    Refactord pipeline item remove code.

    VtkAlgorithmProperties has a new member _removable which should be
    set to false in a derived class which should be not removable from
    the pipeline view.

commit 4053333b095205d17cde76e902b51b869ab0b748
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Mar 5 11:28:48 2012 +0100

    OpenSG Export works so far.

    Cell data is converted to point data. To correctly export meshes comment
    out line 104-115 in vtkOsgConverter.

commit 634300e426439ea1b2fba76810d43b0c10a6688b
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Mar 2 17:14:25 2012 +0100

    WIP: getting OpenSG export to work properly.

commit c744aec853bdc14b63d1550b905e4bf9287c0489
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Mar 2 17:13:45 2012 +0100

    Moved VtkAlgorithmProperties to base class VtkVisPipelineItem.

    Fixed getting the right VtkAlgorithmProperties in
    VisPipelineView::contextMenuEvent().

commit 3f2fc6ecb9780282107825fdd74adf5b1a010c56
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Mar 1 16:09:25 2012 +0100

    Fixed a bug where entering zero into the z-scale field hides the data permanently.

commit b1de459fd44988c2ebb7192037e5eece5911ecf3
Merge: 31238be 85cbb30
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Mar 1 14:04:14 2012 +0100

    Merge remote-tracking branch 'upstream/master'

    * upstream/master:
      updated version to 5.2.08
      merged OGS-GEM-MT changes into trunk
      Recovery GetElementFaceTri..Quad
      bug fix for benchmark H2/LabGasInjec

    Conflicts:
    	FileIO/MeshIO/LegacyVtkInterface.cpp

commit 22d2f7ef9af77d5cdd9cde8dac9f49e97ffff729
Merge: 2c455fa 31238be
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Thu Mar 1 12:49:09 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit 2c455fabac630b0359a613f076983798bc85b416
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Thu Mar 1 12:48:45 2012 +0100

    fixed issue with layer mapping due to to transition to VtkRaster

commit 31238be45cd410ad16bfcc34d45741f8bbe0e4d0
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Mar 1 12:39:48 2012 +0100

    Added warning when lut can not be applied.

commit cb897f5e872f585d893eee6c7b77b905d23975c6
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Mar 1 12:33:57 2012 +0100

    Fixed setting lut on tubes.

commit 09fe6aa96ed78eea71922ec7877b7f10741b68d6
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Mar 1 12:10:38 2012 +0100

    Revert images should not be interpolated.

commit eb5079092069c935e55e672117d47f2598cc2b64
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Mar 1 11:38:41 2012 +0100

    Removed OGSRaster.

    Refactored VtkBGImageSource which is used for exporting raster data
    to OpenSG to be used similar to VtkTextureOnSurfaceFilter.

commit c9db2e3e289476472ebbc8c756362a999ce5cc1b
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Mar 1 10:20:26 2012 +0100

    - fixed a compile error within UTL programms
    - fixed some warnings

commit 7eafc3b3b2722409d9a22efb83d7bc2d574542a3
Merge: 56a2948 c9372d4
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Mar 1 09:52:29 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit 56a29485b5ab55730fed9be5faf9b2d327ae9cf9
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Mar 1 09:51:04 2012 +0100

    commented some debug messages in class OctTree
    added MeshGrid algorithm to the testMeshSearchAlgorithms program

commit c9372d47a444c741bb552997eba6c0238d04cfcf
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Feb 29 16:16:42 2012 +0100

    Finished Surfer-Import, removed old OGSRaster-class everywhere except in OpenSG-Raster Export and replaced with VtkRaster

commit 00114568b69db6744e4000d0471e554d3ab79fc5
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Feb 29 15:37:01 2012 +0100

    added import for Surfer-ASCII raster files

commit a564cb0b0dbad136202ea30d0ef52d1dff23cde5
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Feb 29 12:57:15 2012 +0100

    added optional station_value attribute to station objects

commit 7d26180b78bafae0cbba9d3c662507c3a4e0ca79
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Feb 29 11:38:18 2012 +0100

    removed color-attribute from stations (not needed)

commit e20ac6a636d8a56a8817a81cb9fa41361f3e57e1
Merge: 353b36e dcf274e
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Feb 29 11:29:20 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit 353b36e90b73d0c783ac75ca4330ae2f17d19e09
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Feb 29 11:05:14 2012 +0100

    more work on creating, saving and loading of DIRECT terms

commit abefb68b8666104f11ffd64a95a408c69edc50ee
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Feb 28 15:16:18 2012 +0100

    changed output precision for gml files in rotateMesh programm
    some changes in class CNode in order to make it possible to use it with class template OctTree
    changes in the testMeshSearchAlgorithm programm

commit 8654b1b9737db7d535b38e3a3550a2655ae3e386
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Feb 28 13:12:32 2012 +0100

    - added test programm for mesh search algorithms
    - changes due to changes in the interface of the XML classes

commit dcf274ee6e018f0b889b291cc1aff451f950c25a
Merge: 50f3233 e6ea6a3
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Feb 28 12:17:33 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

    Conflicts:
    	UTL/FileConverter/generateMatPropsFromMatID.cpp

commit 50f3233ed1080a1672ac9edd46b5885159a1300e
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Feb 28 12:12:25 2012 +0100

    - implemented class OctTree for faster search - will be tested soon
    - added access operators to CNode (access to coordinates)
    - modifications in utility programms GMSH2OGS.cpp, generateMatPropsFromMatID.cpp, mainModifyMeshProperties.cpp and rotateMesh.cpp due to changes in class FileIO::OGSMeshIO

commit e6ea6a3041e595e4172969c83dcde643a78a04d5
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Feb 27 16:41:02 2012 +0100

    Fix for subverison cmake script.

commit bf0bd61ca5cb31542b4c78f6414b90230f4fc9aa
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Feb 27 14:51:50 2012 +0100

    Fixed FindMsysGit^.

commit dfaa87841493a96a42a152c45d95229da8b44678
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Feb 27 12:43:54 2012 +0100

    Some CMake improvements: msysgit unix tools will be used on Windows.

commit 9cbfe842f71d1d35b3b973c6f81d499259a58caf
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Feb 27 09:51:41 2012 +0100

    Fixed CMake include order.

commit 5ccee0ec9720a236715fefced48e6fe821344127
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Feb 27 12:10:40 2012 +0100

    finished conversion of xml-classes into new hierarchy, adapted tests + tools

commit 8f0577eeedb9781dc552483fc361cc2e6b904323
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Feb 27 11:23:06 2012 +0100

    derived all xml-classes from Writer-class

commit 563a4212b6cac1c460ebf93d56fc250a9c00ffb5
Merge: e961cab 4728f1b
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Feb 27 09:17:25 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit e961cab2f3946ed62e94859a2b78cbcd2cade1f5
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Feb 27 09:17:18 2012 +0100

    integration of direct st generator into gui (not yet finished)

commit 4728f1bd3b7a3700f66882861592f03d8ce1b11c
Merge: d1813d5 ac93e47
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Feb 27 09:15:01 2012 +0100

    Merge branch 'fileio_baseclass'

    * fileio_baseclass:
      Moved write method to protected.
      WIP: Reader.
      Refactored OGSMeshIO to use the new Writer base class.
      Added output parameter to QtTestrunner.
      Removed wrong method.
      Added Writer base class.

commit ac93e47021e8a5ad0976818c45bb2c34b878c475
Merge: 62d0313 d1813d5
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Feb 27 09:13:56 2012 +0100

    Merge branch 'master' into fileio_baseclass

    * master: (48 commits)
      Threshold filter gets the right range.
      Added missing include.
      Mapper automatically uses the range from its associated lookup table.
      Fixed threshold filter color lookup.
      Fixed threshold filter lookup table coloring.
      Added -o switch for additional CMake options.
      fixed a bug in rotateMesh program (deleted an object twice)
      fixed a normalisation thingy
      changed distance computation in quadtree fixed a compile error in OGSError
      - Changed reading gli files, the function returns now a std::vector<std::string>. In this vector of strings possible error messages are catched and can be desplayed later on. - Changed test if point is already in quadtree.
      just some cosmetic changes...
      Reovery MarkInterface_mHM_Hydro_3D() for marking nodes on the top surface
      Fixed empty VtkAlgorithmProperties in point set item.
      added an "epsilon" to the search of mesh nodes within surfaces
      Correct the getElementFaces...
      some fixes for surface integration via GUI
      added an optional parameter to rotateMesh program
      Fixed css link on doxygen.
      Removed debug output.
      modified rotation programm
      ...

commit 62d0313968f97f72e2228778d03628cc5576304e
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Feb 27 09:13:30 2012 +0100

    Moved write method to protected.

commit d1813d5a56af4e2fccd8a95dd3040735d10bfae4
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Feb 24 11:44:14 2012 +0100

    Threshold filter gets the right range.

commit 96116a1c753412f82241088ed7311a5b3a26b886
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Feb 24 09:00:17 2012 +0100

    Added missing include.

commit 3b6c606acc322821349d7285c9511f15529ca161
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 23 17:59:34 2012 +0100

    Mapper automatically uses the range from its associated lookup table.

    Simplification of lookup table code. Fixed VtkCompositeImageToCylindersFilter
    table range property.

commit 01a5b01759568f1d69fd4f1966da8736f1fbb021
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 23 16:50:11 2012 +0100

    Fixed threshold filter color lookup.

    TODO: Get contour filter to work with color lookup.

commit 46ba4f9beb8d28074c00f88f449c773b7270ffe5
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 22 14:38:09 2012 +0100

    Fixed threshold filter lookup table coloring.

    Fixed order of initialization steps in VtkVisPointSetItem.
    Extracted method getScalarArrayNames() from VtkVisTabWidget to
    VtkVisPipelineItem.

commit 6fdf6e2f57ceb230418f51cb5299fff18056d338
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 22 14:36:22 2012 +0100

    Added -o switch for additional CMake options.

commit 8ee83bc47538d9e4af58fdbd060a19eb12b21094
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Wed Feb 22 15:24:47 2012 +0100

    fixed a bug in rotateMesh program (deleted an object twice)

commit 2821effa909e75be126de2fe47e54fcc14fd682e
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Feb 22 09:42:38 2012 +0100

    fixed a normalisation thingy

commit 12b72da924db3f785fdf9900c3faa4b321a44261
Merge: e9c22d5 ddd8d3e
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Feb 21 14:12:01 2012 +0100

    resolved conflict

commit ddd8d3e74380b6dcb747f182f1c936171d30e9c6
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Feb 21 13:57:00 2012 +0100

    changed distance computation in quadtree
    fixed a compile error in OGSError

commit d3a98155b49c86c6b293c0f9d02ccc4b1a726772
Merge: 490999f b1ae64c
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Feb 21 13:20:46 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit 490999f4558f19accc59b76b00eaab1a468c6350
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Feb 21 13:18:03 2012 +0100

    - Changed reading gli files, the function returns now a std::vector<std::string>. In this vector of strings possible error messages are catched and can be desplayed later on.
    - Changed test if point is already in quadtree.

commit e9c22d54900b8f7cb473f46e0b47235383b91627
Merge: 52493ed b55ee92
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Feb 21 12:14:12 2012 +0100

    Merge remote branch 'svn/master'

commit 52493edf0750d520190677f13fab83590e732253
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Feb 21 12:13:07 2012 +0100

    just some cosmetic changes...

commit b1ae64cb83fa95f2482852835378d64a8103490e
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Feb 20 12:38:07 2012 +0100

    Fixed empty VtkAlgorithmProperties in point set item.

    Signed-off-by: Lars Bilke <lars.bilke@ufz.de>

commit e27eb60168b84f59cedb9b6df3c4288348368f63
Merge: a63e01f c0c4b77
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Feb 20 12:20:33 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit a63e01f0a51a4cce364440d8903655dea3e39bb0
Merge: 3f5e071 5b7edb6
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Feb 20 12:16:49 2012 +0100

    merged

commit c0c4b7775bf9b6a1a4e084fc29ff79419ee8e473
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Mon Feb 20 11:58:09 2012 +0100

    added an "epsilon" to the search of mesh nodes within surfaces

commit 3f5e071a698aec09da73506447fa4c956e4e5875
Merge: bceced0 20bb3e1
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Feb 20 10:09:26 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit bceced04225588064698167f71bd06c0f69470c2
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Feb 20 10:09:05 2012 +0100

    some fixes for surface integration via GUI

commit 20bb3e1f8411cb9067b5575571685d9ead7dcac0
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Mon Feb 20 09:08:41 2012 +0100

    added an optional parameter to rotateMesh program

commit 589087cd343d38234a67c5905f13b138d178fa7f
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Feb 17 11:48:06 2012 +0100

    Fixed css link on doxygen.

commit b7eceeaad9b1b39f5eee3742b829cc259fabe751
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Feb 17 10:23:01 2012 +0100

    Removed debug output.

commit 0940bdf4ed24015be3779c4e75c4b3d4518c1365
Merge: 6613ccd f7103f1
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Fri Feb 17 13:37:27 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

    Conflicts:
    	UTL/MSHGEOTOOLS/CMakeLists.txt

commit 6613ccd022b7a31059251a457c91398da7ee2173
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Fri Feb 17 13:18:41 2012 +0100

    modified rotation programm

commit f7103f1ed56e2728b99ced82b353fd36703cdcd3
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Feb 17 09:55:10 2012 +0100

    Refactored geotiff library inclusion.

commit c38f395249a17c1f6eb0df0d6c4f4753c42dc1ef
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Fri Feb 17 08:39:52 2012 +0100

    fixed compilation error and removed some warnings

commit bf687438c60074bccc68ae4cc200c4cbabb8d106
Merge: a75f51f 64e0f8b
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Thu Feb 16 18:09:24 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit a75f51f710f24ce4488fdee9d74dad63767eff6d
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Thu Feb 16 18:09:07 2012 +0100

    fixed yet another colour-lookup-table bug; implemented first attempt for surface integration of direct source terms (based on WW code, not tested yet)

commit 64e0f8b2f252bbcdb5209e848b0eb43436d4fa63
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 16 16:31:37 2012 +0100

    Fixed crashes which occurred when wildly clicking in a tree view happened.

commit c9f56a5f15001e681947178bab4addcc59cdc9e1
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 16 14:52:35 2012 +0100

    Fixed ConvertGliToVtk compile error on older boost version.

commit 58d5e805bcc7059d011a236e598fbc7fb79b889e
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 16 14:24:30 2012 +0100

    Remember directory for lookup table.

commit 286a6a229dbb90ae1ff839e92c68499a83d8d920
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Feb 16 15:48:20 2012 +0100

    removed some warnings

commit 5eb90f77724a8c498f00d557d17b0c2c690bd616
Merge: 40ec71e 354a0d6
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Feb 16 15:27:30 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit 40ec71ec99eba7c5baad3bf5c5f5c6225ff6eae7
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Feb 16 15:26:33 2012 +0100

    improved search mesh nodes in (geometric) surfaces

commit 354a0d6a4693c7747fa77b04bf3b2e03e070732f
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 16 10:28:07 2012 +0100

    Fixed coloring of assigned textures in VtkTextureOnSurfaceFilter.
    .# Please enter the commit message for your changes. Lines starting

commit 1fcc6bf496930d56cddc7794b50f112d3db8354f
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 16 10:27:29 2012 +0100

    One more fix for correctly creating lookup tables in VtkVisPointSetItem.

commit db2eb96ff72d2e12303e80c7f5b5f0ef62148f25
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 15 16:37:19 2012 +0100

    Fixed a bug in FindMKL.cmake on *nix 32-bit.

commit 8af412911be9338561d39b0b25500c3c74964bcc
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Feb 15 17:37:05 2012 +0100

    fixed an issue where colourlookuptables wouldn't work correctly if the offset was far from 0

commit 9d6acd2cbd0471ad0a918e26f42d40dff408f2b4
Merge: 8310dda 62da5e0
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Feb 15 12:21:01 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit 8310dda681322979b296588651497b03e65df5cc
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Feb 15 12:20:43 2012 +0100

    adjusted colour table scaling

commit 62da5e0810b84210aad4c92e284024d47e39b32c
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 15 11:09:11 2012 +0100

    Fixed UTL build on Mac.

commit f39f15a96f19a22d2fd7a524e48dab114efdaea2
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 15 11:09:00 2012 +0100

    Missing file.

commit 1aca305cb6e62c62cc3bf329893ccd3dc12b29b9
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 15 09:51:45 2012 +0100

    Split VtkAlgorithmProperties into header and source file.

commit a30fe0cd68c150f0fe96c5ae33d1972241696fb5
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Feb 14 17:26:05 2012 +0100

    Removed _activeAttribute from VtkVisPointSetItem.

    The active attribute is stored in VtkVisPointSetItem::_vtkProps.

commit 18a36f0187d8fecc8ffbd1f58254f6c5534a4c1a
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Feb 14 17:13:00 2012 +0100

    Fixed color lookup table functionality.

commit a52ae05242c40e7d24583d44aa33f3fb07be1545
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 15 11:42:57 2012 +0100

    Fixed building of UTL.

commit bae9625408a6a311f54a3a667520ef32800e1f86
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Feb 13 17:48:44 2012 +0100

    fixed another small thing concerning borehole depth initialisation

commit 75f8b113ddd90d44cbe5ece1a2b1fe2ade1e67fa
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Feb 13 17:22:54 2012 +0100

    WIP: Reader.

commit ecb255fd2c1073219d3ccf17370ba7e9169e4e70
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Feb 13 16:34:21 2012 +0100

    Refactored OGSMeshIO to use the new Writer base class.

commit 8c51dce8868b030be2ed3fe774e653655f43f856
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Feb 13 16:33:00 2012 +0100

    Added output parameter to QtTestrunner.

    When this parameter is given the output of a failed test is
    written to tests/results/.

commit 079d4c4dfaaba79d4cafe8bf8f4248cb902c6dcd
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Feb 13 16:25:14 2012 +0100

    Removed wrong method.

commit a9323b6ec1ebf20ceda611909a6418f586268598
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Feb 13 16:23:55 2012 +0100

    Added Writer base class.

commit 503f5230093701a7b6911fbc20e78f02f838b011
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Feb 13 12:49:11 2012 +0100

    fixed bug were vtk visualisation (lines to tubes) would produce false results if borehole had soil layers with thickness 0

commit 1fbe37e72758d77f1891ef558d37a8a6d723f3ee
Merge: 4612a75 cf48800
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Feb 13 10:40:41 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit cf48800a11f3583030a0dac777e0272d323fd8c4
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Feb 10 15:40:55 2012 +0100

    Fixed some small bug in vtk output.

commit e58e14908d9aac29f3bce7236de4c531bfc2bff9
Merge: 9939d3b 2829668
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Feb 10 09:48:19 2012 +0100

    Merge branch 'vtk_tensors_output'

    * vtk_tensors_output:
      Some formatting.
      Fixed non VTK build.
      Added Option OGS_DONT_USE_VTK.
      Implemented eigenvector vtk output of tensors with vtkMath class.
      Removed Eigenvectors functions.
      Added Eigenvector calculation from vtk.
      Bumped minimum cmake version to 2.8.3.

commit 28296684675f6275d2c720a7da263e2174bb2c83
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Feb 10 09:46:41 2012 +0100

    Some formatting.

commit 49b080140f73a1bfe9265625bb9ffb89343a4516
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 9 18:10:44 2012 +0100

    Fixed non VTK build.

commit 2f8fdaf66725260a425d9694f00d0faf31e8a90a
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 9 18:05:51 2012 +0100

    Added Option OGS_DONT_USE_VTK.

commit 82c3241ea73a9dcf807544036f427053d5c95f13
Merge: 94f865d 9939d3b
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 9 17:16:00 2012 +0100

    Merge branch 'master' into vtk_tensors_output

    * master:
      Reversed order in EQ_ASSERTS.

commit 9939d3b7ecdef4885341f7c1f617be0330ce6fd6
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 9 17:10:39 2012 +0100

    Reversed order in EQ_ASSERTS.

commit 94f865d16d147df4be1d78736df67940a5008f18
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 9 17:07:28 2012 +0100

    Implemented eigenvector vtk output of tensors with vtkMath class.

    The eigenvectors are normalized and then multiplied by their eigenvalues.

    In *.out file the output array names must be in that order:

    *_XX
    *_XY
    *_YY
    *_ZZ
    *_XZ
    *_YZ

commit 4f37bb1426099b6ea4f627015ec32321c3760652
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 9 17:06:09 2012 +0100

    Removed Eigenvectors functions.

commit 4612a75af5666acad9e646adc69cebdfccdf63b1
Merge: 44f7008 852573b
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Feb 8 18:05:24 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit 44f7008794ed5e60df142d66d4ad2ed545a812a4
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Feb 8 14:34:59 2012 +0100

    added tool to map elevation of points in gml-files according to DEM

commit f904321eecd01f63a8be0d60d55ef4d27cca591a
Merge: 32e8975 852573b
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Wed Feb 8 13:45:31 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit 32e897574dab665da37ec540f76cd18b83f4600b
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Wed Feb 8 13:43:48 2012 +0100

    - rotateMesh - added functionality
    - first try to improve geometry-mesh-search

commit b74bdd71724b717c42598e51cea43de9e6286670
Merge: 4317f8d 852573b
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 8 12:06:08 2012 +0100

    Merge branch 'master' into vtk_tensors_output

    * master: (119 commits)
      QtDataView must be built before VtkVis.
      Reintroduced getter methods on VtkGeoImageSource.
      Fixed two warnings.
      resolved various issues with netCDF import; NetCDF data can be imported as raster (and texture) now; ImageAlgorithms can be created from data arrays now; textures now use VTKRaster class; textures are currently using a default colour table - this should be prevented
      Fixed image to lines filter.
      Added backface culling option under Visualization Settings.
      - introduced a new nodes search algorithm (class MeshGrid) - TetGen export does not work as desired :-(
      fixed image translation by half a pixel
      image origin and spacing are now managed via image import; raster to mesh is working again; applying color table to images is working again; bar-chart filter ist still NOT working correctly; issue with floating value to material id conversion in raster-to-mesh-conversion
      images are now read directly via vtk, automatically scaled and noData values are transparent (for asc, tif, png, bmp and jpg); image-based filters do not yet work again
      Georeferenced image positioning fixed.
      Fixed path.
      removed QImage and tried to replace functionality entirely by VTK ... not working atm
      Fixed some doxygen warnings.
      Fixed typo.
      Added benchmark coverage script.
      Added benchmark_coverage target.
      Added parameter passing to testrunner.
      Refactored CMake include directories to use absolute paths.
      Exclude tests directory on coverage.
      ...

commit 852573b95e60a2d52eaf34a61c285f8fa70a546d
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 8 11:53:34 2012 +0100

    QtDataView must be built before VtkVis.

    This fixes a compile error on *nix.

commit 79c2f6b5dd58f2261ec6772df3746dd37a1fab74
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 8 11:10:26 2012 +0100

    Reintroduced getter methods on VtkGeoImageSource.

commit ffeb4276ebf350da09ea2cff831d06f053369edc
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 8 11:10:09 2012 +0100

    Fixed two warnings.

commit fe52e67350fde31c4d4e5b8ce4a1bd1d6b9be0c0
Merge: 5241fbb 7c893e7
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Feb 7 17:55:51 2012 +0100

    resolved merge conflict

commit 5241fbb3374b8aab7cd1f2a468193e9b257c99c9
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Feb 7 17:51:47 2012 +0100

    resolved various issues with netCDF import; NetCDF data can be imported as raster (and texture) now; ImageAlgorithms can be created from data arrays now; textures now use VTKRaster class; textures are currently using a default colour table - this should be prevented

commit 7c893e7e6c28759974aad57a88cf03a3e58fcb3a
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Feb 7 17:30:45 2012 +0100

    Fixed image to lines filter.

    TODO: Image to bar chart filter (colors missing).

commit 36a92129abf81a47e1b6e9fc6f024dbbf8247f39
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Feb 7 16:08:57 2012 +0100

    Added backface culling option under Visualization Settings.

commit e53b5e5287ec1bb067547c2b10b68679457e3ffb
Merge: eea0bcb bdc5ba4
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Feb 7 12:25:28 2012 +0100

    Merge branch 'master' into TetGenOutput

    Conflicts:
    	CMakeLists.txt

commit bdc5ba43c8700893efc0436e9eb2c4db3459e52b
Merge: 7a07d21 7525ef0
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Feb 7 12:19:35 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit 7a07d212d51c492b5b954d34b055c9b96d2aa4e8
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Feb 7 12:17:37 2012 +0100

    - introduced a new nodes search algorithm (class MeshGrid)
    - TetGen export does not work as desired :-(

commit 7525ef0c52ee769f92a23c61e08a13f8f10dceb6
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Feb 7 09:50:26 2012 +0100

    fixed image translation by half a pixel

commit 68e2f8c2ab0cf181f14d31b980afba2c2d20166f
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Feb 6 17:25:38 2012 +0100

    image origin and spacing are now managed via image import; raster to mesh is working again; applying color table to images is working again; bar-chart filter ist still NOT working correctly; issue with floating value to material id conversion in raster-to-mesh-conversion

commit 66c62b381cafe7dc5d7fc8dfc54596278757f420
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Feb 6 14:36:16 2012 +0100

    images are now read directly via vtk, automatically scaled and noData values are transparent (for asc, tif, png, bmp and jpg); image-based filters do not yet work again

commit dee84eb876cece67b67283869f70c8254c0b47fb
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Feb 3 14:21:57 2012 +0100

    Georeferenced image positioning fixed.

commit 6ee0693e37f8f6e217f86c225d8f1fb7ec45e2c6
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Feb 3 10:16:46 2012 +0100

    Fixed path.

commit ed3103b64c193123e10c94eda6d4eae97744adea
Merge: 0fc50ab b20210d
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Thu Feb 2 17:52:00 2012 +0100

    Merge branch 'master' of vismac02.intranet.ufz.de:+ff-devs/ogs5/ff-sources

commit 0fc50abbf2a8b2220d06191efb81366a209634e3
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Thu Feb 2 17:51:43 2012 +0100

    removed QImage and tried to replace functionality entirely by VTK ... not working atm

commit b20210d2b8a0e640f2e5dfc2e5b0f87b743e925c
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 2 17:37:05 2012 +0100

    Fixed some doxygen warnings.

commit 8aea6867f4928bfac0dfb749ebc019548ab844ab
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 2 16:22:55 2012 +0100

    Fixed typo.

commit 18815a618fd3814850bdedefa82bbde8ce4fe881
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 2 14:03:55 2012 +0100

    Added benchmark coverage script.

commit 8217b59b9554dc3deefa01090c974a6c4e487105
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 2 13:55:19 2012 +0100

    Added benchmark_coverage target.

commit 6b18a1d6ad5d880e850ed76e629ee9adb93dc498
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Feb 2 13:53:37 2012 +0100

    Added parameter passing to testrunner.

commit 928fb7c12e02e83a70b5ae7b7e8445d4699f2282
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 1 17:02:46 2012 +0100

    Refactored CMake include directories to use absolute paths.

    On one hand this makes the CMake files better readable and on the
    hand this will fix the presentation of code coverage reports on
    Jenkins.

commit ba6f049521598da9154e11a61a7962b27512b418
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 1 16:01:09 2012 +0100

    Exclude tests directory on coverage.

commit e16d6f39ff20ad8938962d37ece805b8449bb74e
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 1 15:49:13 2012 +0100

    One more fix.

commit 14c4c86b3b7375e3f4b348a6ada6f4374b9340ac
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 1 15:40:51 2012 +0100

    Fixed Jenkins build.

commit 4ac18ea6bacae1053beb9c917633f7757b51a1f9
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 1 12:34:18 2012 +0100

    Added coverage build script.

commit 036d257ca8d9e008cf1c56405460883a238c5d07
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 1 12:33:26 2012 +0100

    White space fixes.

commit 918b016a22ce47f265a8f787d3c3f7ac3205120a
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 1 12:31:14 2012 +0100

    Code coverage on Jenkins.

commit f9e91a6f38138af760548a111f12dcf3981ded4c
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 1 12:30:57 2012 +0100

    SOme small fixes.

commit a4fa6aedb49f995208710122c95f71d6578a2fd4
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 1 12:29:36 2012 +0100

    VRPN extension is only build when option is set.

commit b3d57f0186ce059cddbd7cd63aeea3c5ea5e08c7
Merge: fdb2140 e2c1ce2
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Feb 1 10:49:09 2012 +0100

    Merge remote-tracking branch 'upstream/master'

    * upstream/master:
      HS Fix
      PTC update
      Fix bugs in van Genuchten permeability model for two-phase flow. From now on, index 43 stands for wetting phase and 44 for gas phase
      Squashed commit.
      PTC_FLOW, updated

commit fdb214047a3c5eda5545d594b2d565014865f0c4
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 31 17:29:33 2012 +0100

    Cobertura code coverage report generation with gcovr added.

commit b7a372789917c58426c9c2e769c82187c71cef64
Merge: 3330389 96a51e3
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 31 16:08:57 2012 +0100

    Merge commit '96a51e34b5ebe66ab23778541a69fd56eeaada06'

    * commit '96a51e34b5ebe66ab23778541a69fd56eeaada06':
      Squashed 'cmake/' changes from 85fb0c6..b27f806

commit 96a51e34b5ebe66ab23778541a69fd56eeaada06
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 31 16:08:57 2012 +0100

    Squashed 'cmake/' changes from 85fb0c6..b27f806

    b27f806 Fixed typo.

    git-subtree-dir: cmake
    git-subtree-split: b27f8064a6348de3be4c397fedbfddcce321fced

commit 333038961f2f287b03c5d6d05301e12567e4da97
Merge: 59146e0 48b2c75
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 31 12:28:40 2012 +0100

    Merge commit '48b2c75b69a4bce3c991a2adf861eb865712033d'

    * commit '48b2c75b69a4bce3c991a2adf861eb865712033d':
      Squashed 'cmake/' changes from d77e35c..85fb0c6

commit 48b2c75b69a4bce3c991a2adf861eb865712033d
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 31 12:28:40 2012 +0100

    Squashed 'cmake/' changes from d77e35c..85fb0c6

    85fb0c6 Some renaming.

    git-subtree-dir: cmake
    git-subtree-split: 85fb0c61ad9afbeea96315257f4388a05bda223d

commit 59146e00508b405513433f67b366af0740b03db3
Merge: 8d8eef6 f51df6c
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 31 12:19:37 2012 +0100

    Merge commit 'f51df6c8368c3d8032e9592c720e38337c44b0cc'

    * commit 'f51df6c8368c3d8032e9592c720e38337c44b0cc':
      Squashed 'cmake/' changes from 2c1a353..d77e35c

    Conflicts:
    	cmake/CodeCoverage.cmake

commit f51df6c8368c3d8032e9592c720e38337c44b0cc
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 31 12:19:12 2012 +0100

    Squashed 'cmake/' changes from 2c1a353..d77e35c

    d77e35c Merge commit 'ace8b6e945c61df3f11dadcc3665dfa5a928db47'
    ace8b6e Code coverage with lcov module.
    f068b6d This is version 5.2.07 by LB / TF / KR.
    6507fac Squashed commit of the following:

    git-subtree-dir: cmake
    git-subtree-split: d77e35cf601f065b838de0bedd1e66d0280f05f9

commit 8d8eef679283c9596aa158e54cbd26cd7f61f565
Merge: f34517e 088aa7f
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 31 12:03:22 2012 +0100

    Merge commit '088aa7f4b2e891b41f3e6aefc6fe496417a21fc7'

    * commit '088aa7f4b2e891b41f3e6aefc6fe496417a21fc7':
      Squashed 'cmake/' changes from 6773a13..2c1a353

    Conflicts:
    	cmake/FindMSVCRedist.cmake

commit 088aa7f4b2e891b41f3e6aefc6fe496417a21fc7
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 31 12:01:29 2012 +0100

    Squashed 'cmake/' changes from 6773a13..2c1a353

    2c1a353 Moved some CMake modules to cmake/.
    e63887f Moved some CMake modules to cmake/.
    6c55978 Updated README for pushing.
    903e318 Added missing cmake module.

    git-subtree-dir: cmake
    git-subtree-split: 2c1a3532c55313f1a220609e168dc64300ddd290

commit f34517e1157a8b3bde47bd2c4466c9ec19ae1946
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 31 12:00:22 2012 +0100

    Some renaming.

commit 468a316efbb4ab04d0cb12a65c78795b5463eb69
Merge: 0b96faf fc9d5ab
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 31 11:56:13 2012 +0100

    Merge branch 'gcov'

    * gcov:
      Code coverage with lcov working.
      Code coverage with lcov module.

commit fc9d5ab6b51bdce71338b5875adbddb5a23ed4b0
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 31 11:54:01 2012 +0100

    Code coverage with lcov working.

    Enable it with OGS_COVERAGE=ON and then make the gtests target.

commit 87caa3677157d57c4856f3c1578bcfee620e8d48
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 31 11:53:48 2012 +0100

    Code coverage with lcov module.

commit 2d628996057a92b7df42f00e5d6935daca0becbf
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Jan 30 18:46:51 2012 +0100

    added missing file

commit 0bd22a28dd9589882bf0d0a3e359234cc7a7e8e7
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Jan 30 18:46:14 2012 +0100

    ogs now uses xml-color-lookup-tables (same as paraview), colour tables can now be applied to images

commit eea0bcb47f9e2818d405e7074f20128b2173b0bc
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Mon Jan 30 15:18:22 2012 +0100

    added a programm that rotates 2D meshes into the x-z-plane

commit 0b96faffadc59eebe485e03a408e50b22c634c00
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Jan 27 11:35:24 2012 +0100

    Fixed include (including cpp's is not allowed).

commit 092295b83cf240a23d5e9325323566974f5d76d2
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Jan 27 11:34:12 2012 +0100

    Marked CTAGS and BBEdit CMake vars as advanced,

commit 5ad7ba014f8386a9492fc43bb9a35e5f31e35899
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Mon Jan 30 08:45:05 2012 +0100

    added test dir in CMakeLists.txt

commit 9911f4b5c1294c2e855c0a39d681e9904557190b
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 23 17:59:16 2012 +0100

    Jenkins commit url test.

commit ebfc6dae3393b5e1f3de0aa83ee3d4d7cd32b5eb
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 23 17:38:22 2012 +0100

    CMake dependency not needed here.

commit 5490e352d3a5c7c0ddbbd99237fb6089c55e157d
Merge: 8c1c0b9 4c167b7
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 23 17:07:19 2012 +0100

    Merge branch 'ff'

    * ff: (95 commits)
      Forgot file.
      Forgot that gdiff depends on Qt
      Refactored GEO tests.
      Moved gdiff to tests/.
      Refactored QtTestrunner to use googletest instead of QTest.
      Fixed creating first reference file.
      Added some QCOMPARE example usages.
      Added Qt definitions as stated in http://developer.qt.nokia.com/quarterly/view/using_cmake_to_build_qt_projects
      added testGMSHFromGeo
      Fixed false interpretation of test diffs and added possibility to update reference files.
      Added code completion file generation with ctags.
      fixed index error in FEMConditionSetupDialog
      removed test funcionality
      fixed an index error in meshfromraster
      fixed a bug in mesh writing
      fixed error in TestRasterFromMesh
      Fixed one folder mistake and simplified test make targets.
      Fixed gdiff building on Windows.
      All test targets are now organized in a Testing folder in Visual Studio.
      made interface of OGSMeshIO::write() more general
      ...

commit 4c167b7511f3afcdd41f346a566de4d55a2beb6b
Merge: 2f6e020 8c1c0b9
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 23 17:03:35 2012 +0100

    Merge branch 'master' into ff

    * master:
      Fixed Windows packaging on Visual Studio 2010 Win XP x32.
      back
      git-svn-id: https://svn.ufz.de/svn/ogs/trunk/sources@10001 3895a583-e809-0410-9bb6-aa9463026377
      PTC has updated w.r.t. EOS
      Squashed commit.
      Squashed commit.

commit 2f6e0207a7e16c0db5cb7f28dd8e9fada9b7a439
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 23 13:45:28 2012 +0100

    Forgot file.

commit ed00775a2bf5d9c584a7a8331075f3af5299c080
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 23 12:42:52 2012 +0100

    Forgot that gdiff depends on Qt

commit 97b9ca7b5e1139590da28c15890069fb242a3036
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 23 12:38:21 2012 +0100

    Refactored GEO tests.

    Moved input file to testdata repository. Made TestPointInTriangle googletest
    although it needs some test assertions.

commit f2ca760a39118dcae882522b22e6052c332cf980
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 23 11:55:56 2012 +0100

    Moved gdiff to tests/.

commit 484140750dff86c62fb2d22152b0775b11f923d5
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Jan 20 17:44:17 2012 +0100

    Refactored QtTestrunner to use googletest instead of QTest.

    This is because when using QTest ther must be one executable per
    test to function properly. This would make it more complex to
    write tests.

commit 984c77a7e0b96cb68ec2efa98035d7df037793b6
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Jan 20 14:49:48 2012 +0100

    Fixed creating first reference file.

commit f25cff6538fe4bed976607b64a399879c3eda8fa
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Jan 20 14:26:10 2012 +0100

    Added some QCOMPARE example usages.

commit 67d202c646637de0f6558ffc6c0618f1df081c58
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Jan 20 14:24:38 2012 +0100

    Added Qt definitions as stated in http://developer.qt.nokia.com/quarterly/view/using_cmake_to_build_qt_projects

commit b9e731246447af1eb99be283fe5ac36170b2ca2e
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Fri Jan 20 14:18:20 2012 +0100

    added testGMSHFromGeo

commit 95f5a95584dcaa94563a5b2e969c3b5283ec1c1f
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Jan 19 15:07:03 2012 +0100

    Fixed false interpretation of test diffs and added possibility to update reference files.

    To update a reference file run QtTestrunner with a test function name,
    e.g. bin/QtTestrunner testMeshFromRaster

commit bc0c6274367e7f7248318c188c3e05f667c919ed
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Jan 19 12:24:10 2012 +0100

    Added code completion file generation with ctags.

    See http://ctags.sourceforge.net/ctags.html or
    http://www.cellcortex.com/2011/02/vim-ctags-for-qt-development-on-osx.html
    for details.

commit e731caea5cf676ebbc3f34aa5ef20c22abf638e5
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Thu Jan 19 12:33:53 2012 +0100

    fixed index error in FEMConditionSetupDialog

commit f9a5f7f47f4cb06dc7f7fae76c10a283896f3fc1
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Thu Jan 19 11:55:30 2012 +0100

    removed test funcionality

commit ce89b6605752476de0a4a3b13549f672398824ea
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Thu Jan 19 11:54:28 2012 +0100

    fixed an index error in meshfromraster

commit ed4e7ad6d81f6059ef710434dbf059431686ada8
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Jan 19 11:55:55 2012 +0100

    fixed a bug in mesh writing

commit 81b5adc0e9e0dd60e78c6713b4a5de4f5e55e1c6
Merge: b424d17 dd65b87
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Jan 19 11:46:30 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit dd65b87edd705248835877ec424be879cf75f445
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Thu Jan 19 10:16:56 2012 +0100

    fixed error in TestRasterFromMesh

commit b424d17f5b22f399e5d61179191ad5959abd8701
Merge: 4e388ac 9b51868
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Jan 19 08:29:09 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit 9b51868b9ab4bac97d8c9acec5256f4e64dc3b9c
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 18 17:41:26 2012 +0100

    Fixed one folder mistake and simplified test make targets.

commit 9767d945583921880d7bb4f19b7e18ffcad80c48
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 18 17:24:19 2012 +0100

    Fixed gdiff building on Windows.

commit e907c68cdad7ff97343a624785e35d7bc4b84fcf
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 18 17:18:50 2012 +0100

    All test targets are now organized in a Testing folder in Visual Studio.

commit 4e388ac2f5833f4c7d8da728f66b72888b0d2e0e
Merge: 163db50 7cfbe6f
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Wed Jan 18 16:30:29 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit 163db503cb0f75aceaf0c5cee31c5ba4889df17d
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Wed Jan 18 16:29:51 2012 +0100

    made interface of OGSMeshIO::write() more general

commit b972e4dedba107f6d1a24e614a019a4148cd3bfd
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 18 16:27:04 2012 +0100

    Introduced new make targets gtest and qtest and renamed CTests for them.

commit e54b96b4257bfba3c3f931de286467a31a992ccb
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 18 16:26:45 2012 +0100

    Added correct return code.

commit 7cfbe6fd0fa5039065ae1d41dde593954e386a21
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 18 15:28:15 2012 +0100

    Nun aber!

commit 6ab90350a84a982f4357e1e62d8f64f407ca92ae
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Jan 18 15:28:18 2012 +0100

    fixed a few warnings

commit 24bcf66d4f7ea57a69d9b8366dd76072de216cae
Merge: ea7ca6c f4b52e1
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Jan 18 15:05:58 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit ea7ca6cb8b67ff5178e5425568cd89cd65b84bb6
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Jan 18 15:05:21 2012 +0100

    FEM Conditions can now be set on all points of a given polyline or surface

commit f4b52e13eea9a8327b9f0c6fdba0c259648261c7
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 18 15:03:41 2012 +0100

    Benchmark script considers new Qt tests.

commit e199a73395860ec805750d08aebcd2bb5a00863d
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 18 15:03:24 2012 +0100

    Fixed CMake variable.

commit 006425970ff5f3c2ccf6e2e05869ada9f6ae46f0
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 18 14:48:30 2012 +0100

    Fixed diff output url path.

commit be169ca368715dd6d13e2002a80679917efc27db
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 18 14:34:20 2012 +0100

    Added link to the diff output on failed tests.

commit e12b875b600c2976e10de5bb37d1cedcd3fa1636
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 18 12:19:18 2012 +0100

    WIP: Just testing a link in the test output.

commit 2bc88687ae80db1c53473034a2da98e77c112b60
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 18 11:54:52 2012 +0100

    Changed QtTestrunner to a non-gui app because of Jenkins testing.

    A Jenkins Linux slave does not have a X server running.

commit 1e7aa4402f404cd09c2eea9c21444c7bc278adb4
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 18 11:36:10 2012 +0100

    Fixes a linker error on dev2.

commit 1aa7a6db960673d8a98ace09b58966791f53bbe8
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 18 10:57:16 2012 +0100

    Enabled testing in build script.

commit 893ecba9287fa1789049e63313da6ced7b0658fe
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 18 10:28:35 2012 +0100

    QtTestrunner is now also a ctest with QtTests.

    If run through ctest it outputs to build/testsQtTestrunner.xml.

commit 83ba5e9772e4c3cda85e648966ac5f1fa218bee7
Merge: 17f8a97 3c2d3c5
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 17 15:16:10 2012 +0100

    Merge commit 'e8de161' into ff

    * commit 'e8de161':
      Finished first working version of Qt / Vtk testing.
      Moved test data to its own repository testdata.
      Forgot this.
      First implementation of the QTest based Qt/Vtk testing.
      Added a mesh write method which works with stringstreams.
      Removed time from build time stamp because this enforces a rebuilt.
      Fixed CMake build path.
      Renamed TestMeshFromRaster.

    * commit '3c2d3c5e6c3bf37b44c2168e784413e9d2c9e562':
      Finished first working version of Qt / Vtk testing.
      Moved test data to its own repository testdata.
      Forgot this.
      First implementation of the QTest based Qt/Vtk testing.
      Added a mesh write method which works with stringstreams.
      Removed time from build time stamp because this enforces a rebuilt.
      Fixed CMake build path.
      Renamed TestMeshFromRaster.

commit 3c2d3c5e6c3bf37b44c2168e784413e9d2c9e562
Merge: 883c1df 17f8a97
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 17 15:06:06 2012 +0100

    Merge branch 'ff' into HEAD

    * ff:
      Removed old and unused LIB_DIR CMake variable.
      Removed unnecessary OGS_USE_NETCDF CMake variable.
      fixed a few inlude-issues
      Bumping required VTK version to 5.8
      Added ncvalues.h from vtknetcdf source to DataView to fix compilation on *nix.
      renamed local variables for NetCDFDialog, included initialisation list and removed warnings
      fixed path-error under linux
      fixed bug concerning colour-table assignment; fixed bug concerning source term conversion
      NetCDFDialog: enter name of nc-object
      NetCDF Import Interface

    * commit '17f8a977ad03b11a19da7bd2593dab1df0828086':
      Removed old and unused LIB_DIR CMake variable.
      Removed unnecessary OGS_USE_NETCDF CMake variable.
      fixed a few inlude-issues
      fixed a bug creating Steiner points in GMSHInterface
      Bumping required VTK version to 5.8
      Added ncvalues.h from vtknetcdf source to DataView to fix compilation on *nix.
      renamed local variables for NetCDFDialog, included initialisation list and removed warnings
      fixed path-error under linux
      fixed bug concerning colour-table assignment; fixed bug concerning source term conversion
      NetCDFDialog: enter name of nc-object
      NetCDF Import Interface

commit 883c1dfe6b2267c9c385784c9a57bb1a43557ae8
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 17 15:01:51 2012 +0100

    Finished first working version of Qt / Vtk testing.

    These tests depend on the existence of the new testdata repository.
    See tests/Qt/Vtk/TestMeshFromRaster.h for an example test.

commit 1a9f55cf534a72b04a0cc003047eaf4fa403b04b
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 17 14:10:07 2012 +0100

    Moved test data to its own repository testdata.

    Url: http://vismac02.intranet.ufz.de:8080/ogs5/testdata

commit 17f8a977ad03b11a19da7bd2593dab1df0828086
Merge: 5df482c d00085f
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Jan 17 11:07:23 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit d00085f151d8f622666c667c3d7cd8711745b416
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 17 09:54:32 2012 +0100

    Removed old and unused LIB_DIR CMake variable.

commit 9bfd3a8bea6c24eb1906a7c58e96178166b7e03e
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 17 09:53:43 2012 +0100

    Removed unnecessary OGS_USE_NETCDF CMake variable.

commit e1d006c7706b6f5c9f9cad421755afbaa64ee6fe
Merge: 983342e 24ce539
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Jan 17 09:29:19 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit 983342e170be75d5fca6571af216b4d743ba233c
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Tue Jan 17 09:29:00 2012 +0100

    fixed a few inlude-issues

commit 5df482c00ce4c345fe12381c6ad1a05cb4c1387f
Merge: 9f62d33 24ce539
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Jan 17 09:11:25 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit 9f62d33f05ddcca6ea215bd99fa36c71a8834dbf
Merge: 5fc38bd d98c980
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Jan 17 08:06:28 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit 5fc38bd240e8dc98a3e99b3f3e4d1182ef1553bc
Merge: ba59846 810e680
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Jan 17 07:58:41 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit ba59846d2ef460d7c2a238e6a225383f04e437cb
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Tue Jan 17 07:57:59 2012 +0100

    fixed a bug creating Steiner points in GMSHInterface

commit 24ce539346a5ada6352d2ed9e8bf8b712c6bce2b
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 17 07:37:16 2012 +0100

    Bumping required VTK version to 5.8

commit d98c980b8d65442353c24c9ed80d1c184d50e68d
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 17 07:00:59 2012 +0100

    Added ncvalues.h from vtknetcdf source to DataView to fix compilation on *nix.

    This is a temporary bugfix for a VTK bug. The header is not installed by VTK
    but is needed from the vtknetcdf_cxx library. On Windows this is not the
    case because VTK is not installed but only built.

    See http://www.vtk.org/pipermail/vtkusers/2012-January/120994.html for
    more details.

commit 937f6a43cb8125db801662fe2ee7f4b306dedfb0
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 16 17:26:06 2012 +0100

    Forgot this.

commit 7a1573990d1f217d837f87815d5d252e2ea8f3b4
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 16 17:24:34 2012 +0100

    First implementation of the QTest based Qt/Vtk testing.

commit 17a580277948166ffc8cfd0b3cd8a6fa3f87cabb
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 16 17:23:23 2012 +0100

    Added a mesh write method which works with stringstreams.

commit c4af45d10dcb9d509ad2da00ee0c0295638ca217
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 16 17:22:27 2012 +0100

    Removed time from build time stamp because this enforces a rebuilt.

commit 7b1f1dd8d6f329c32e9dde4634c4ead6842d843e
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 16 17:22:05 2012 +0100

    Fixed CMake build path.

commit 198d475c1b8ff827d534169836e97892c9429757
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 16 17:21:33 2012 +0100

    Renamed TestMeshFromRaster.

commit 810e680c23c7c812413f1fe4168e131ac12482d3
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Jan 16 16:10:58 2012 +0100

    renamed local variables for NetCDFDialog, included initialisation list and removed warnings

commit d0312aaea849b7f0e005c0f5a161274c86e7222f
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Jan 16 15:53:26 2012 +0100

    fixed path-error under linux

commit c4bc8ccecb43de347889de8990586b2ba92184ea
Merge: 094a00a 0949419
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Jan 16 15:28:02 2012 +0100

    Merge remote branch 'caro/ff' into ff

commit 094a00a01562ef2549c05a59829d6f4fe2325809
Merge: 18313ed e034505
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Jan 16 15:25:58 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit 18313ed9f4237684650199aa0ae94bf7b54774a7
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Jan 16 15:08:43 2012 +0100

    fixed bug concerning colour-table assignment; fixed bug concerning source term conversion

commit e03450592ce5e6a65b4629188977eb44445d0128
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 16 11:41:31 2012 +0100

    Removed UTL/Vtk from CMake.

commit 86c0ba241a09be91bb4ef8bb816f53ed0486d9a8
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 16 11:03:22 2012 +0100

    Fixed build script and moved testMeshFromRaster to tests/.

commit 3d1914177ab324ab9548a9d98231edb7799517c3
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Jan 16 10:16:57 2012 +0100

    fixed cmake issues under MSVS

commit 4a517e9c1b2cfdef7135d0ac327d410c33b5bc06
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 16 10:05:21 2012 +0100

    Added Visual Studio folder grouping.

    Visual C++ Express users must explicitly turn this feauture OFF with
    CMAKE_USE_FOLDERS=OFF.

commit cb6c2767589f5ab59e224a089331c16044d40e3e
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Jan 13 15:28:20 2012 +0100

    Added googletest source code and removed external library dependency.

commit a1e5864aaaf846a27c0d4936deaa0d11210a94bb
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 11 11:40:06 2012 +0100

    Bumped minimum cmake version to 2.8.3.

commit 58086349d86add39ab1e1b8f404061bb9efeeb10
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Fri Jan 13 15:54:51 2012 +0100

    added documentation for testMeshFromRaster

commit f62a437c33c19b2a60f6e8c6579876b07a2ac5dd
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Fri Jan 13 12:08:59 2012 +0100

    fixed cmake file

commit 3f453cd67e9e0339247308e99522813a306120fc
Merge: 4b7f0bb 128406e
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Fri Jan 13 11:53:38 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit 4b7f0bbb576c8aa1c5f9f3c70f097fa126ebd5cc
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Fri Jan 13 11:53:16 2012 +0100

    added test for raster-to-mesh conversion; some efficiancy-changes in condition-source

commit 128406e1ad82d6d653eb8326d994f2251a181822
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Jan 12 09:52:58 2012 +0100

    fixed a small bug, which prevents compilation with linux

commit d869386a6b51d287d645f029390f40c7be6d8000
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Jan 11 18:13:23 2012 +0100

    added missing dialog files

commit 681308ecbd6ccd750910e15fcaa1dff3c29a7828
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Jan 11 18:12:32 2012 +0100

    all (simple) femconditions can now be converted to the old fem objects, fem conditions can now be saved to file via a special dialog that allows to select various options

commit 4317f8d2e35a6bc6239c92627b0d7e3af3b61d65
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 11 17:45:36 2012 +0100

    Added Eigenvector calculation from vtk.

commit 09494199598fc56d3e93e20971f4f1e50b79be1f
Author: Carolin Helbig <carolin.helbig@ufz.de>
Date:   Wed Jan 11 17:11:19 2012 +0100

    NetCDFDialog: enter name of nc-object

commit 70e141e06ceec179772e87003c2f22d76f91ec5e
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 11 11:40:06 2012 +0100

    Bumped minimum cmake version to 2.8.3.

commit f0ba97174b020eb47757d2cb7b6292a1628d63a0
Author: Carolin Helbig <carolin.helbig@ufz.de>
Date:   Wed Jan 11 15:31:52 2012 +0100

    NetCDF Import Interface

commit bf3d26b3670dc02f3ae0bca4aeb490a91b4d13ed
Merge: 0cfdd15 683bf2c
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Jan 11 12:41:18 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit 0cfdd1526099461c5960da300cfb2ad66fcbb180
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Jan 11 12:41:01 2012 +0100

    added CBoundaryCondition(BoundaryCondition*)-Constructor, fixed bug with incorrect names for surfaces from old geometry-files

commit 683bf2cbb0d14cf8df8fa31cbb37598e59bd0ea5
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 10 10:14:44 2012 +0100

    Fixed Windows packaging on Visual Studio 2010 Win XP x32.

commit 83d09e4ea6dffba06b2bd071895db5869f76703e
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Mon Jan 9 13:02:48 2012 +0100

    Typo.

commit 3410f4dfe822c9ab56477365a6435b7009d35ff2
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Jan 9 17:31:20 2012 +0100

    removed debug-output

commit 2de554b6cc645dd211bced36a9a58047a9220f9d
Merge: 974dd04 20983a0
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Jan 9 17:26:57 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit 974dd0422313ded313c5ee773825c4b7037d1c70
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Mon Jan 9 17:26:25 2012 +0100

    restructured VtkConditionSource such that only geometry-points that are actually needed are port of the object ... this also resolves the issue with incorrecct visualisation of DIRECT conditions and non-surface points

commit 550b471042113ab67deebca0e48b6b827f69cba7
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Fri Jan 6 14:14:43 2012 +0100

    back before trying something new

commit 20983a04a117ed5e495078a68bbdb8829b603b02
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Fri Jan 6 14:02:22 2012 +0100

    Corrected cmake message when profiling.

commit d75a441195b8ec8e9f97a378533bb52417664aea
Merge: 84b4d74 5e98368
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Fri Jan 6 13:44:43 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit 84b4d74ee58350743c101f09f23c3f5ce854373d
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Fri Jan 6 13:44:00 2012 +0100

    fixed a serious bug in vtk output

commit 838d57d8841d36b8445c1a02af562eaa61bcc5a6
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Fri Jan 6 12:29:01 2012 +0100

    refined direct-st generation (only surface nodes are used now)

commit 5e98368ab52601a9ec1c05654cea43647875c9e3
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Jan 5 11:18:41 2012 +0100

    Updated gprof2dot to rev cbf7da383d79.

commit 24ed192f6ffc7d02d588f7f497bf16a52b1330f1
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Thu Jan 5 10:48:21 2012 +0100

    Forgot gprof call when configured with OGS_PROFILE=ON and running CTest.

commit b11a8c92a626bb35cd2b391586c0738ee986a34f
Merge: 13d4b9c 71e7531
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Fri Jan 6 07:50:46 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit 13d4b9cd1d7011b6ebe914f7227c12eb42abbb2a
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Jan 5 16:20:28 2012 +0100

    fixed some typos

commit 71e753199f07cd52e3f0023ef1420c9ad3bf6632
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Thu Jan 5 15:34:40 2012 +0100

    Fixed a few memory leaks

commit f51c852138c824e7f8efd92ed7b79036a88f5918
Merge: 6a909a7 1ea2ff5
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Jan 5 15:16:55 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit 6a909a72148d16f05829e9ecc845b1c5fae1e677
Merge: e0dc6e7 f86f8ac
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Jan 5 15:07:17 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit e0dc6e722affb92e6e2be106c9e08ccf4c2a6aa9
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Thu Jan 5 15:06:04 2012 +0100

    some changes to transform an old GeoSys4 Surface type 4 into a surface that can be described by GEOLIB::Surface class

commit 1ea2ff5454d41a5f79e23764c44b22cd9d612515
Merge: ef3a63f f86f8ac
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Thu Jan 5 14:13:05 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit ef3a63f484849f7576caab5d9bd69e12fef7b37b
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Thu Jan 5 14:12:36 2012 +0100

    added first test to create direct source terms from raster files

commit f86f8ac1027cda53ab76621748c4e9409f8a21bd
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 4 15:05:51 2012 +0100

    Once again testing hooks.

commit f4d6cad5b59d1f60220d6cdc9e59d431a02e9e9b
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 4 15:00:41 2012 +0100

    One more whitespace fix. I am just testing the gitorious post-receive hooks.

commit 85dbbbc46444a54bfef39fd21ce7c27e79973c7f
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 4 14:35:32 2012 +0100

    More whitespace fixes.

commit 410d595cc6fbca8fbff26e768f079d2ec2b47711
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 4 14:21:26 2012 +0100

    Some whitespace fixes.

commit 82defb95e803f28f31511f7409465e90b9116e52
Merge: 6510d2a 7b9a29d
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Jan 4 10:31:25 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit 6510d2afa438ea62c8637b2982a68c9b09f4a8c1
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Jan 4 10:31:14 2012 +0100

    some small changes

commit 7b9a29df25ea188d5b0a9cfff8611bc2618d3c56
Merge: 303c939 93d5173
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 4 09:58:27 2012 +0100

    Merge branch 'remove_wget_deps' into ff

    * remove_wget_deps:
      Revert md5.
      Fixed Typo.
      Fixed md5 for shapelib makefile.
      Fixed paths and added output which file is downloaded.
      Added mkdir bin.
      Removed wget dependency for setup scripts on Windows.
      Added bash function to download a file with cmake.

commit 93d517323b12606dcdbb2eb385fe8851e2b99fc7
Merge: 32edc97 303c939
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 4 09:57:41 2012 +0100

    Merge branch 'ff' into remove_wget_deps

    * ff:

commit 32edc97b97ab1dc5a902b92aba37c6604b21c952
Merge: 7c896b8 0fd3063
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 4 09:56:55 2012 +0100

    Merge branch 'master' into remove_wget_deps

    * master:
      Removed old SetupLibs.bat script (and also test the subversion sync again).
      Squashed commit of the following:
      Squashed commit of the following:

commit 7c896b8be1f6a125d549a5080f1eb82166dd0615
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 4 09:27:42 2012 +0100

    Revert md5.

commit 27b578cf40dd2792d9b9e5a4c35c6116798f9224
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 4 09:23:48 2012 +0100

    Fixed Typo.

commit d00d6e695541e9398981a8be8ade7a53add576af
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Wed Jan 4 09:21:42 2012 +0100

    Fixed md5 for shapelib makefile.

commit 303c9398234bdb8017b278e9a0aad64f9b460ae7
Merge: 6fc2296 0fd3063
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 3 15:11:58 2012 +0100

    Merge branch 'master' into ff

    * master:
      Removed old SetupLibs.bat script (and also test the subversion sync again).
      Squashed commit of the following:
      Squashed commit of the following:

commit d82599b0a0fc1a2e69252da9492b30d7888155e0
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 3 15:10:16 2012 +0100

    Fixed paths and added output which file is downloaded.

commit 37155c4d4af7fd375ac9b8260b1beeb667d3c79d
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 3 14:44:03 2012 +0100

    Added mkdir bin.

commit 4581d932f831d99bf844a4c7e4c2820932745624
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 3 14:36:30 2012 +0100

    Removed wget dependency for setup scripts on Windows.

commit b000e0ea91949b37ca9e625c23f051321aec3a1b
Author: Lars Bilke <lars.bilke@ufz.de>
Date:   Tue Jan 3 14:15:03 2012 +0100

    Added bash function to download a file with cmake.

commit 6c3894471012e03079e8ff87fd42179c927db60b
Merge: 4c2e288 6fc2296
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Mon Jan 2 08:21:00 2012 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit 4c2e288b5dc380d4720e182557caa3bf0072132c
Author: Thomas Fischer <thomas.fischer@ufz.de>
Date:   Mon Jan 2 08:20:33 2012 +0100

    fixed warnings in FEM/vtk.cpp

commit 6fc2296e4d9d3ba9c53d975d283fa95a5a4428c2
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Dec 21 15:56:58 2011 +0100

    optimized GridAdapter to CFEMesh conversion (and vice versa) a bit

commit 18b42f4dfa78421266be239b424e11e592252f76
Merge: 70b218c be08f78
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Dec 21 15:35:20 2011 +0100

    Merge branch 'ff' of vismac02.intranet.ufz.de:ogs5/sources into ff

commit 70b218cea3192205114bb8031a022289a6985d74
Author: Karsten Rink <karsten.rink@ufz.de>
Date:   Wed Dec 21 15:34:55 2011 +0100

    changed VtkMeshConverter to work with GridAdapter instead of CFEMeshes; changed MshModel to a more GridAdapter-centered approach; fixed bug in MshLayerMapper
Added script for disabling compiler flags.
Merge commit 'ae30e077258182c21ae4049b4810fc7faa57255d'

* commit 'ae30e077258182c21ae4049b4810fc7faa57255d':
  Squashed 'cmake/' changes from b27f806..baf6698

Conflicts:
	cmake/CodeCoverage.cmake
Added FindNetCDF.cmake from https://github.com/jedbrown/cmake-modules
Added FindQVTK.cmake
Fixed FindQVTK on Windows.
Added CMake variables value list script.
Typo.
    Merge commit '718c486de0b35dccb23a56ae1073c115c5689a2f' into merge_subtree

    * commit '718c486de0b35dccb23a56ae1073c115c5689a2f':
      Typo.
      Added CMake variables value list script.
      Fixed FindQVTK on Windows.
      Added FindQVTK.cmake
      Added FindNetCDF.cmake from https://github.com/jedbrown/cmake-modules
      Added script for disabling compiler flags.
      This is release version 5.3.0.
      White space fixes.
      SOme small fixes.
      Cobertura code coverage report generation with gcovr added.
      Fixed typo.

    Conflicts:
    	scripts/cmake/cmake/CodeCoverage.cmake
Merge commit '718c486de0b35dccb23a56ae1073c115c5689a2f'

* commit '718c486de0b35dccb23a56ae1073c115c5689a2f':
  Typo.
  Added CMake variables value list script.
  Fixed FindQVTK on Windows.
  Added FindQVTK.cmake
  Added FindNetCDF.cmake from https://github.com/jedbrown/cmake-modules
  Added script for disabling compiler flags.
  This is release version 5.3.0.
  White space fixes.
  SOme small fixes.
  Cobertura code coverage report generation with gcovr added.
  Fixed typo.
With OGS_CMAKE_DEBUG=ON all cmake variable values are printed.