BUG:  Uncomment switch.

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1502 fd2da0a4-d968-48df-9cb5-d8c496287cbf
ENH: Update path of where testing data can be found.

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1503 fd2da0a4-d968-48df-9cb5-d8c496287cbf
BUG:  In case image dimension isn't specified.

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1504 fd2da0a4-d968-48df-9cb5-d8c496287cbf
BUG:  In case image dimension isn't specified.

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1505 fd2da0a4-d968-48df-9cb5-d8c496287cbf
BUG:  In case image dimension isn't specified.

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1506 fd2da0a4-d968-48df-9cb5-d8c496287cbf
ENH: A simple program to ANTS for SyN registration

This is the simplest exemplar program for demonstrating
the anstRegistrationHelper.

"simpleSynRegistration" is added to ants that includes a simple function
that does SyN registration with hard coded parameters. Also, some tests
are designed to compare the results of this program and the main
antsRegistration program. Those tests are passed successfully.

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1507 fd2da0a4-d968-48df-9cb5-d8c496287cbf
ENH: Clean up compiler warnings.

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1508 fd2da0a4-d968-48df-9cb5-d8c496287cbf
ENH: vector add subtract etc as basic ops in image math

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1509 fd2da0a4-d968-48df-9cb5-d8c496287cbf
BUG: removed image direction rotation

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1510 fd2da0a4-d968-48df-9cb5-d8c496287cbf
COMP: Comment out unused function

The -  DirectionCorrect<TensorImageType, ImageType>(img_mov, img_ref);
function is no longer used, so comment out the code completely.

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1511 fd2da0a4-d968-48df-9cb5-d8c496287cbf
ENH: Add .gitignore for code development

The .gitignore file allows ignoring unwanted source
repository files.

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1512 fd2da0a4-d968-48df-9cb5-d8c496287cbf
COMP: Improve build perf with cmake 2.8.9

CMake 2.8.9 treats git repositories more intelligently
and the update steps take much less time.

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1513 fd2da0a4-d968-48df-9cb5-d8c496287cbf
ENH: Fix ITKv4 Composite Transform read/write.

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1514 fd2da0a4-d968-48df-9cb5-d8c496287cbf
ENH: better initialization for cca

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1515 fd2da0a4-d968-48df-9cb5-d8c496287cbf
ENH: L1 for cca

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1516 fd2da0a4-d968-48df-9cb5-d8c496287cbf
ENH: L1 for cca + initialization function

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1517 fd2da0a4-d968-48df-9cb5-d8c496287cbf
BUG: Missing declaration of InitializeSCCA

It was necessary to add the declaration so
that compilation could complete.

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1518 fd2da0a4-d968-48df-9cb5-d8c496287cbf
Updates related to composite transform

The composite transforms were not being properly evaluated.
This is a first pass of code review to make composite transforms
work as well as the separate transforms.

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1519 fd2da0a4-d968-48df-9cb5-d8c496287cbf
BUG: Logic for composing transforms

The composite transform compostion was not
being done correctly.  It resulted in unnecessary
nesting of the first composite transform.

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1520 fd2da0a4-d968-48df-9cb5-d8c496287cbf
ENH:  Adding fixed/moving initialization using image alignment or center of mass alignment.

git-svn-id: https://advants.svn.sourceforge.net/svnroot/advants/trunk@1521 fd2da0a4-d968-48df-9cb5-d8c496287cbf