fix example code fragment in RigidBody documentation

git-svn-id: https://svn.salilab.org/imp/trunk@15441 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
don't forget to pass paths you get from libraries to imppy.sh

git-svn-id: https://svn.salilab.org/imp/trunk@15443 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
add missing headers

git-svn-id: https://svn.salilab.org/imp/trunk@15445 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
handle case where there is no unknown container

git-svn-id: https://svn.salilab.org/imp/trunk@15446 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
make everyone's life easier by just making dependencies go into the normal build hierarchy

We are going to need to install them anyway, so this way the regular install script can do its work. This will fail with dependencies that have data and are not relocatable, but when we need those, we can figure them out

git-svn-id: https://svn.salilab.org/imp/trunk@15447 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
oops, fix last commit as I sent the wrong version

git-svn-id: https://svn.salilab.org/imp/trunk@15448 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
it is pretty much arbitrary for this CMakeLists.txt anyway

git-svn-id: https://svn.salilab.org/imp/trunk@15450 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
move dependencies into subfolder

git-svn-id: https://svn.salilab.org/imp/trunk@15451 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
skip code that is not ours when checking standards

git-svn-id: https://svn.salilab.org/imp/trunk@15452 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
forgot a file that uses example dep

git-svn-id: https://svn.salilab.org/imp/trunk@15453 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Add protoc from scons wiki to replace our code as it is a bit creaky

git-svn-id: https://svn.salilab.org/imp/trunk@15454 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
add (hidden) method to output whole object show to error streams

git-svn-id: https://svn.salilab.org/imp/trunk@15455 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
show all particle attributes when you can't constructor a decorator for the particle

git-svn-id: https://svn.salilab.org/imp/trunk@15456 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
fix logic error in rmf particle creation

git-svn-id: https://svn.salilab.org/imp/trunk@15457 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
remove gcc_like characterization as we really only handle compilers like mpicxx that actually are, underneath gcc and it was causing confusion.

git-svn-id: https://svn.salilab.org/imp/trunk@15459 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
don't require modules that use example to link against the dummy dependency explicitly

except for when doing static linking, but we having turned on static building of the example dependency, so that will just get skipped

git-svn-id: https://svn.salilab.org/imp/trunk@15462 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
patch lazy commit

git-svn-id: https://svn.salilab.org/imp/trunk@15463 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
add locks to rmf and add a rmf_pdb that doesn't require IMP

git-svn-id: https://svn.salilab.org/imp/trunk@15464 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
forgot to update header file

git-svn-id: https://svn.salilab.org/imp/trunk@15466 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
forgot to update sconscripts

git-svn-id: https://svn.salilab.org/imp/trunk@15467 e91f8c7b-0e32-4433-a9ac-4502d39a4eab