labofsahil/github-event-dataset-2012 huggingface dataset:
add empirical allele observation bias adjustment table

By specifying --observation-bias users may provide a table which
describes the empirical mapping bias against alleles given the number of
bases subtracted or added between the allele and the reference.  This is
intended to improve genotype likelihood (GL) estimates and downstream
imputation and processing of these likelihoods.
version 0.9.8
set default input filters (-C 2 -F 0.2)

In testing, these input filters on the minimum support for a given
allele have been found to provide a very good balance between
sensitivity and specificity, reducing the need for users to place
complex filters on their VCF output.

We use them by default in our work in the 1000 Genomes project
low-coverage (4-6x) data.

However, They may not be ideal in polyploid or pooled systems or
low-frequency somatic variant detection, so users working in such
contexts should set them to a level appropriate for their needs.
Implemented JSON API for trucks controller
Correnti link a file php transitori.
Fixed 2 bugs in invert
Added invert_action
Fixed the conflict in README
revise chapter

update
Fixes for Mac CUDA
Still missing packaging of jruby-complete.jar into Purugin.jar, but this CL change allows a simple Purugin.jar to be dropped into plugins directory and not need a special launch script anymore
CMS-606 Implement support for Range-facets
Why is this failing on Teamcity?
Fixed setting total value in accounts/search REST response.
two fixes by Enrico Scholz
add SO_RCVBUFFORCE and SO_SNDBUFFORCE
change x64 start code so that return in main works even if the kernel lacks x32 support
dummy RepublicCommentary_Quandt.xml
Fix coding style (spaces -> tab)
trying to fix display of utf-8 comments and strings
remove the weird symbols from the README
remove more weird symbols
capitalize Bloscpack when not a command or a file
first steps to rstify the README
fix links
another link
rstify titles
try to convert fixed font stuff
fix a missing title
fixup all the fixed font stuff
make the changelog as a list of lists
fix the list
fixup the header description
update the readme to reflect changes in debug output
rename README
fixup the RST
bump copyright year
pep8 fixes
* data update (completion of missing streets in Reinickendorf,
  Wittenau, Luebars, Blankenfelde; also resolved some fragezeichen
  in Buch, Karow and Malchow)
more work withgg04
working on new gmix
ca-tests: removed ValueLookupTest as it is now part of Qi4j core and my fix made it upstream

Everything works ok with Qi4j 2.0-develop now!
Add pronunciation function to ABWord. It calls android's
tts(TextToSpeech) to provide pronunciation  of word.
Change the WordItem model. List<String> paraphases to 
List<HashMap<String,String>> paraphases,HashMap<String,String> has to
keys: "pos" & "acc"
sentences to sents; also String to HashMap<String,String> keys: "orig"
& "trans"
Auto sort dicts to make the first one is the one used last time
xml resource changed
.classpath
Only disable non rentals in search
update css
use data-confirm option as :confirm was deprecated in rails 3.2.6
Merge pull request #1920 from nashby/data-confirm

use data-confirm option as :confirm was deprecated in rails 3.2.6
use data-confirm option as :confirm was deprecated in rails 3.2.6

SimpleForm templates
Merge pull request #1921 from nashby/data-confirm

use data-confirm option as :confirm was deprecated in rails 3.2.6
add actual code documentation
Update Java/src/eclipsePackage/test1.java
Minor wording/setting changes.
SOC-2814 | Spaces Administration - Fix bug multi-popup show tree.
SOC-2814 | Spaces Administration - Format code spacemanagement.js
Merge branch 'feature/admin-space-creation' of github.com:exodev/social into feature/admin-space-creation
SOC-2814 | Spaces Administration - Space creation=> integrate Commons-Setting(Cont)
Convert headers to lowercase
Merge pull request #315 from tokenrove/correct-header-case

Convert headers to lowercase
Cleanup Group Events Along With Seed Cleanup for No Longer Used Group Events
whitespace
Formatting
Fix up presentation of datasets
Comments
New styles
Capture server information when requesting wps capabilities
Display server info on module catalog page
Better presentation
Nicer presentation
Change id to class, var names
whitespace
Add server name to each process description
* lang_php/analyze/foundation/typing_php.ml: estet
With features
fixed py makestring
Fixed a possible import error with WTForms
renaming app from erlkafka_app to erlkafka
Changes feeds file parsing

lib/parser.py is more organized with a proper class Source that has 2
attributes: url and codelines. The method Source.code() returns the code in
one string with proper triming.
corrects bug on lib/parser.py

Corrects a bug on the parsing the last character of most urls
Updates summary filters

Rorders URLs and hads the needed summary filters.
Changes source to PEP 8 convention

Changes  source code to be consistent with PEP8
Use temporary SSI for fetching query seqs

Still indexing-in-place for reference sequences.
Use RDP annotation of type strain.
Use new is_valid column to determine if tax_id is classified
sync: flex/yacc support and other tweaks
Copying local repository over to github.
Add 'MANIFEST' to .gitignore, excluding generated MANIFESTs.
updates upload directory and dependency
Update tinymce to 3.5.6
add fadeOut fadeIn effect then route changes
Support unicode input. Fixed category deletion
Implemented filtering on items

 (category filtering does not work yet)
Rm useless package
fixed typo and added curl
Requestmail
Removed security from leavesdetail
Added `-e` option - Added `diagnostic` script

- The `-e` `--elementary` options allows users to see how much
  of Japanese input is made up of Kanji learned in Japanese Elementary
  Schools.
- The bash script `diagnostic` runs nanq three times with the
  `-k` `-e` and `-d` options for a quick overview of the input.
  This could be used to compare multiple files for Kanji difficulty.
Added `-q` option

- `-q` `--fromq` filters out all but the Kanji from a given level from
  the input. Only one copy of each Kanji is outputted. This allows one
  to see specifically what Kanji from what Level existed in the input.
Fixed error in `howMuchIsElementaryKanji` function

- Level 5 was not included in the levels to be checked.
  This is now fixed.
SMMU v3.10 (FraggleScript "beta" release").
SMMU v3.21 (Christmas 1999 release)
Initial revision
fix linux build
removed smmu.wad from repository
remove d_net.c
remove files which are not supposed to be here
lag simulation code
client movement prediction
packet stats
client speedup code
remove multiplayer quit flash
check wads in netgames
add W_Signature
udp stats console cmd
fix ticdup
add prediction/ticdup to menu
lightup crosshair prediction
improve multiplayer chatroom interface
default to full prediction
[ADD]
Acertos login css
Print Addresses with 0x%x
Updated Log::getCurrentEntry & advanceToNextEntry

Now the currentEntry is held in a global variable _currentEntry and
getCurrentEntry merely returns a reference to this variable.
sem_wait() replaced with sem_timedwait()

sem_wait() causes problems if the thread was checkpointed while
performing a sem_wait (because we do a sem_init() during resart-resume).
Commit from LuCI Translation Portal by user jow.: 850 of 850 messages translated (0 fuzzy).

git-svn-id: http://svn.luci.subsignal.org/luci/trunk@9344 ab181a69-ba2e-0410-a84d-ff88ab4c47bc
backport features categories and add some new ones like the affinity slider
Update release job refactoring

In preparation to 'upload release --rebase' feature

Change-Id: I1e4b799ff31cb348cdb040c032ca3a82f1a4232f
Add package/job fingerprints to release manifest

Change-Id: I8cf7a7472877fddd7f216eab8294df99e28939a4
Shared releases support

Use 'bosh upload release --rebase' to let director manage release
changes. Rebasing effectively makes director discard provided
jobs/packages versions and bump the latest known version of uploaded
release.

Please use this option with great care, while it provides some basic
release collaboration features, it also requires some workflow changes
and once you start rebasing there is no easy way to get back to old
workflow.

Change-Id: I89072b293a7423f4a824612cbd5d8f5551fddd40
Match fingeprints along with sha1 checksums

Change-Id: I0a37747838cbdb8061c731ab1cd260b5f4064b08
only delete stemcells on failure when it is being uploaded

Change-Id: I1731b8c9cc3f398e8d5c0a48e3960ba45479f187
refactor out helper methods from aws & openstack InstanceManager

Change-Id: Ic3057038cbf0d2f4be861d748a45bb5fec9f0f09
Merge "Update release job refactoring"
Merge "Add package/job fingerprints to release manifest"
Merge "only delete stemcells on failure when it is being uploaded"
Detect blobstore secrets for OpenStack Swift

* Detect OpenStack Swift blobstore secrets in private.yml
* Added unit tests for has_blobstore_secret?

Change-Id: I37177b55b280714890c50ed7c682020a21702dc0
Merge "refactor out helper methods from aws & openstack InstanceManager"
Write gemrc configuration to /var/vcap/bosh/etc/gemrc

RubyGems uses `Etc.sysconfdir` to determine the system-wide
configuration path, which is /var/vcap/bosh/etc here.

Change-Id: I1f1de3ac8ac1acdcee041f0e98e0f435942bcffb
Merge "Detect blobstore secrets for OpenStack Swift"
Merge "Shared releases support"
Merge "Match fingeprints along with sha1 checksums"
Include rebase mapping into event log

Change-Id: I6a480f4045253df4fc928efa7351393e193a5fcc
Show release name/version in event log

Change-Id: I0d4a924cafed95ab0f239548d777d19a4741472c
Save major version when rebasing

Change-Id: Id0b90a970a5c362cf4accc5351439b56a0ff6cf7
Merge "Write gemrc configuration to /var/vcap/bosh/etc/gemrc"
Merge "Include rebase mapping into event log"
test add ExecStopControlTest
delete not using parameter: ExecStopControl(UiView view)
revival ExecStopServlet
move class ImmediateRunControl control.registry.job -> control.execution
change URL /registory/job/run -> /execution/run
rename ImmediateRunControl/Servlet -> ExecStartXxx
move ExecStopControl/Servlet package summary -> execution
rename SchedulerCommitterFactoryImpl -> SchedulerModelFactoryImpl
rename SchedulerCommitterFactory -> SchedulerModelFactory
move SchedulerModelFactoryImpl package servlet -> servlet.factory
extract WaitSummaryBuilder from WaitListControl
move class registry.wait.WaitSummary* to summary.wait
SummaryCollector#addWait()
view SummaryWait.vm #foreach($waitSummary in $root.waitSummaries)
rename JobSummary#waitSummaries -> prevWait
add field JobSummary#nextWait
view SummaryWait; #foreach($waitJob in $waitGroup.jobs)
view br tag slash
add method JobSummary#getSummaryId() WaitJobSummary#getSummaryJobId()
view summaryJobId ("j.xxxx")
Updated for Annotations..  Not working.. :(
Added sampling options.
Added return values support
Modified .gitignore to ignore materials and tools binaries.
Added empty containers to store remote meshes.
derived common gradle properties, settings and tasks
catch instances than name no name
bump version number
Fix for bug where mathematical operators and BIND resulted in sticky values
Some more tests
Merge branch 'master' of github.com:garlik/4store
boutons catalogue
Merge branch 'interface' of https://github.com/garriko/echec into interface

Conflicts:
	echec/target/classes/interfaceGraphique/InterfaceCatalogue$Ecouteur.class
	echec/target/classes/interfaceGraphique/InterfaceCatalogue.class
	echec/target/classes/interfaceGraphique/InterfaceConfigVariante$Ecouteur.class
	echec/target/classes/interfaceGraphique/InterfaceConfigVariante.class
	echec/target/classes/interfaceGraphique/InterfaceJeu$EcouteurAction.class
	echec/target/classes/interfaceGraphique/InterfaceJeu.class
couleur des pieces pendant dplt ok
plus de fin de tour si dep incorrect
début timer
rien
Merge branch 'interface' of https://github.com/garriko/echec into jeu1812

Conflicts:
	echec/src/main/java/projet_echec/echec/jeu/EchiquierActif.java
	echec/target/classes/projet_echec/echec/jeu/Case.class
	echec/target/classes/projet_echec/echec/jeu/EchiquierActif.class
commuutaaa
fdsfd²:wq
Merge branch 'interface' of https://github.com/garriko/echec into jeu1812

Conflicts:
	echec/target/classes/projet_echec/echec/jeu/EchiquierActif.class
timer
Merge branch 'interface' of https://github.com/garriko/echec into interface

Conflicts:
	echec/target/classes/interfaceGraphique/InterfaceJeu$EcouteurAction.class
	echec/target/classes/interfaceGraphique/InterfaceJeu$EcouteurFocus.class
	echec/target/classes/interfaceGraphique/InterfaceJeu.class
	echec/target/classes/interfaceGraphique/InterfacePersoEchiquier$EcouteurAction.class
	echec/target/classes/interfaceGraphique/InterfacePersoEchiquier$EcouteurFocus.class
	echec/target/classes/interfaceGraphique/InterfacePersoEchiquier.class
	echec/target/classes/projet_echec/echec/jeu/EchiquierActif.class
timer
corrige presque bug pion
Merge branch 'interface' of https://github.com/garriko/echec into interface

Conflicts:
	echec/target/classes/interfaceGraphique/InterfacePersoEchiquier$EcouteurAction.class
	echec/target/classes/interfaceGraphique/InterfacePersoEchiquier.class
pieces longue
Merge branch 'interface' of https://github.com/garriko/echec into jeu1812

Conflicts:
	echec/src/main/java/projet_echec/echec/jeu/EchiquierActif.java
	echec/target/classes/interfaceGraphique/InterfaceConfigVariante$Ecouteur.class
	echec/target/classes/interfaceGraphique/InterfaceConfigVariante.class
	echec/target/classes/projet_echec/echec/jeu/Case.class
	echec/target/classes/projet_echec/echec/jeu/EchiquierActif.class
	echec/target/test-classes/projet_echec/echec/jeu/piece/PionTest.class
got rid of an unnecessary pattern match
Arreglos

Signed-off-by: Joaquin Gayoso <gayoxo@gmail.com>
Implemented case2 and updated case1 qa tests a few changes in models and input.source
db/models:

Added some doc for `DisaggResult` table model.
Merge pull request #942 from larsbutler/disagg-result-doc

Added some doc for `DisaggResult` table model

[r=trivial] [f=*trivial]
Removed vulnerability parser
Merged master branch
Merge pull request #982 from acerisara/vulnerability-parser

Vulnerability model parser
new initial
add new 0002_add_fe_views.py
Merge pull request #8 from bwyss/revise

Revise
Handle includes with quotes
Give credit for translations
Norwegian update from Stein-Aksel Basma
Norwegian update from Stein-Aksel Basma
Norwegian update from Stein-Aksel Basma
Norwegian update from Stein-Aksel Basma
Norwegian update from Stein-Aksel Basma
Norwegian update from Stein-Aksel Basma
Norwegian update from Stein-Aksel Basma
Catalan update from Jaume
Catalan update from Jaume
Filter update
[dev-python/pyudev] lates added with tests passing

(Portage version: 2.1.10.65/git/Linux x86_64, unsigned Manifest commit)
Merge branch 'master' of https://github.com/gentoo/python
[app-admin/eselect-python] A pypy aware version

(Portage version: 2.1.10.65/git/Linux x86_64, unsigned Manifest commit)
Renaming
Improve directed graph printing
Added filtering capability for directed graph navigation methods
Move Matrix to fr.jamgotchian.abcd.core.math package
Fix tests after update to bytestring 0.10.1.0.
Test Trac #7164
Enable MathJax for live preview.
Release 2.4.9
Titanic2012
model: add link to spec on docstring
Reload model instance after destroy its translations. This ensures no caching is taken into account when propagating destroy dependencies (imported from 0.8-stable)
Moved superadmin files, no longer installable, into gems
Fixed validation of presence in model template of ubiquo_scaffold
Fixed tests of ubiquo_scaffold for updating format of validations (fixes #14)
Fixed filter message. Before, part of the message was showing as string and not as html. (fixes #16)
Fixed link filter. Link filter isn't working properly because it isn't adding the filter_field to the link. (fixes #17)
Updated validations for Rails 3 (closes #18)
Fixed html render of field errors of file, checkbox and radio input tags (fixes #19)
Fixed static_pages index, that was ignoring the "edit_on_row_click" setting (fixes #20)
Added attachment route and fixed attachment_controller (closes #21)
Updated UbiquoUserNotifier calls for Rails 3 and fixed ubiquo_user form (fixes #22)
Fixed cache problem with restored image in advanced edit (fixes #23)
Fixed ubiquo_media view: When the literals has a simple quote, the javascript throws an error (fixes #25)
Fixed quantity items were updating quantity if additional items were added from the product page.
Docs style.
- emproved renderer functionality
- now spaces out the widgets somewhat
	 - can be improved more by finding the max_rectangle
Fix busted project editing, permission scheme was missing. Refs EMP-68
fix merge-status template
Treat swfs as assets so that they get precompiled like swf_fu expects.
Update .gitignore for precompiled assets.
GRADLE-2318: pass content as byte array and encoding information to apache listingparser; cleanup tests.
GRADLE-2318: Use NekoHtml sax parser for parsing directory listing; todo: add proper encoding handling in ApacheDirectoryListingParser.
Add Null check and give decent debug message if COLUMN env var cannot be parsed.
20121128_office
Read S3 options

Read the file_strage and s3_credentials options
Add default storage settings for file, example s3
Don't use a proc to get the s3 settings
Check if the picker field is expecting an id, if so return it
check id instead of name attribute
Add :hidden_field config option for the input to use a hidden field instead of text_field
add placeholder option
no image = nil method
make sure to test if the hash has been set to true, not just if it exists
typo, fixes text_field
Read S3 options

Read the file_strage and s3_credentials options
Add default storage settings for file, example s3
Don't use a proc to get the s3 settings
Merge branch 'master' of https://github.com/danielwestendorf/rich into S3
fix error in file storage type and make it the default for backwards compatibility
Merged master.
Use id in rich_picker.
admin gui implemented with tinyMCE
disqus intergrated
highlight.js integrated
Grisu update
[maven-release-plugin] prepare release 0.5.1
[maven-release-plugin] prepare for next development iteration
Update grython
[maven-release-plugin] prepare release 0.5.2
[maven-release-plugin] prepare for next development iteration
Updated grisu version, better cli parsing
[maven-release-plugin] prepare release 0.5.3
[maven-release-plugin] prepare for next development iteration
Upped grisu version
[maven-release-plugin] prepare release 0.5.4
[maven-release-plugin] prepare for next development iteration
readme
application ini configurada com e-mail e comentada prq ela tha zuando o bagulho
Merge branch 'master' of https://github.com/grupo3rpv/rpv.git
Merge branch 'master' of https://github.com/grupo3rpv/rpv.git
Merge branch 'master' of https://github.com/grupo3rpv/rpv.git
Merge branch 'master' of https://github.com/grupo3rpv/rpv.git
application .ini modificado
Merge branch 'master' of https://github.com/grupo3rpv/rpv.git
endereços de email modificados no fixtures.php
first commit
Merge branch 'master' of github.com:gry260/chichi
Moved clafer Models
Added clafer examples from SPLOT/Kasper Bak paper.
Add a few things so Raritan outlet would load
Cleaning up the RequestFactory
Issue #6

Auto-completation for jar lib
remove submodule
added theme
Added Sudoku to Repository
Added SVN folder to ignore
working on app_compiler
py binding -- rename file to petabricks_autotune
py binding -- preliminary enumeration of all valid schedules
py binding -- git merge
Improved README.
Merge branch 'master' of github.com:mit-gfx/Halide
Upgrade sh.py
better gantt chart
- Add 3D Assert
- Remove and extract zip file
fix quan-lycanbo.jsp
Merge remote-tracking branch 'origin/master'
fix url
Merge pull request #31 from viduongbk/master

[Merge] fix url
Fix a bug that caused important debugging info to be deleted in modular solver.

The question is whether or not cabal-install will tell you why it tries
a particular goal (i.e., because it's the dependency of something else).

This regression was introduced between 0.14.0 and 1.16.0 of
cabal-install in order to fix a space leak. Restoring the information
actually costs some space again (although not as much as was required
back in 0.14.0).  I think the extra info is worth it though.
Undo some hlint-related changes in the modular solver.

I think the extra parentheses in the type signatures help to
understand the intended use of functions.
Does not belong to VCS.
Does not belong to VCS.
Japanese translation of Git (preparation)
- ‘SparkleShare copy 2.txt’
+ ‘SparkleShare copy 4.txt’
/ ‘.sparkleshare’
- ‘SparkleShare copy 2.txt’
- ‘untitled folder 2 copy/’
- ‘untitled folder 2/’
- ‘untitled folder copy/SparkleShare copy 2.txt’
- ‘untitled folder copy/SparkleShare copy 3.txt’
- ‘untitled folder/SparkleShare copy 2.txt’
- ‘untitled folder/SparkleShare copy 3.txt’
mandando amanda.py
Merge branch 'master' of https://github.com/hdoria/aula03
Switch FFI::Buffer back to java-heap allocated memory
[IR] [1.9] Couple more special/corner cases fixed in block arg setup.
No pipe on windows
Partial fix for JRUBY-6200: [1.9] Loading some Unicode characters results in non-printable characters on Windows

The InputStreamReader we wrapped around the "IO like" object did not
specify an encoding. For now, we force UTF-8, since that likely
covers 99.9% of all YAML out there, and fixes the original reported
issue.
Lost import of RubyEncoding somehow.
Avoid NPE when backtrace is empty and -d given

RubyException#getBacktraceElements can be empty array, JRuby-OSSL test
hits this.
Fix typos, missing decls in cext.
SystemStackError < Exception in 1.9.
[SECURITY] Random String#hash to avoid DoS attack

This is the fix for CVE-2011-4838.

Randomize String#hash (in Ruby world) and internal RubyString#hashCode()
(in Java world) for 'Denial of Service via Algorithmic Complexity
Attacks' explained in [1].  Introduce the runtime-local seed for hash
randomization which is set at runtime initialization and use it as the
seed for MurmurHash 2.0 [2].  MurmurHash is used in CRuby 1.9 and it
should make the attacks difficult. (Assuming that no reverse function
has been found for MurmurHash 2.0)

Credit to Alexander Klink <alexander.klink@nruns.com> and
Julian Waelde <jwaelde@cdc.informatik.tu-darmstadt.de> for reporting
this issue.

[1] http://www.cs.rice.edu/~scrosby/hash/CrosbyWallach_UsenixSec2003.pdf
[2] http://sites.google.com/site/murmurhash/
Fix JRUBY-6307. Under some circumstances, the test "xz /x != z" can give a wrong result because x*x overflows the "long" range and the overflow ends up in just the right spot. We fix this problem by introducing BigInteger here. This is a tiny performance hit; if there is a better way while retaining correctness, I would be curious to learn the trick.
spec for JRUBY-6307. I do not know if it is really a regression, but I will put the spec here.
Hide hash value test which expects deterministic hash value
Remove ruby_test suite.

The ruby_test suite originally started as a suite of tests for
standard Ruby functionality in the "facets" library of core
extensions. We imported a copy of it many years ago to increase our
test coverage, but since then our copy and the real copy have steadily
diverged. The actual suite is now more focused on testing the core
extensions in the library, while ours has remained a standard Ruby
functionality test with modifications where we needed to mask out
impl-specific behavior or bad tests.

At this point, without 1.9 support in ruby_test and with RubySpec
and MRI's own tests providing better feature coverage, I've opted
to remove the ruby_test suite.
IR: Move IRScriptBody out of IRBody
IR: Make IRBody become IR{Module,Class,MetaClass}Body
IR: top-level var scope detection
IR: A good name is hard to find
Implement most of private_constant.

Notable missing items:

* class Foo::Bar should fail if Bar is private
* class ::Bar should fail if Bar is private
* module Foo::Bar should fail if Bar is private
* module ::Bar should fail if Bar is private
These *should* be fixed with recent fixes
[IR] Fixed eval regression from ir-scope refactoring.
Add missing properties to cloud watch

Change-Id: I8d4be61d1a0b7bd37c97148ca291d22487ee22ba
Signed-off-by: Angus Salkeld <asalkeld@redhat.com>
Update notes for submitted changes

* heat align openstack/common with latest oslo-incubator
heat api : add waitcondition to cfn api

Add a new path to the CFN api, which implements CFN style waitcondition
notification - this means we can move away from the separate heat-metadata
service for this purpose, instead using the authenticated CFN API

blueprint metsrv-remove
Change-Id: I62cff7cb4c7a009fea2c8f62ea446d8d758f5429
Signed-off-by: Steven Hardy <shardy@redhat.com>
Typo in a logging declaration

Signed-off-by: Tomas Sedovic <tomas@sedovic.cz>
Allow sending events using metadata server

Signed-off-by: Tomas Sedovic <tomas@sedovic.cz>
fixed pager CSS
more CSS pager cutomizations
various modifications from feedback
replaced badwolf with lucius
By Lugir: Update task list status and database schema.
Exposed installation directory to user as an entry under the Tinia group in cmake-gui
Improved templating of the Wiki.
hmm,mm
aanpassen personen importer to new coosy style and added rake task for import:personen
cleanup
Merge branch 'master' of ssh://10.2.12.24/home/git/trunk
Use sqlite database for legacy data when running tests.

Also fixed an indentation bug in yaml file.
solved 021
solved 023
Composerでの導入手順を追記
saving a parameters structure now works even when aeff and tsys are set as functions
fixed addSites script
changed positions in regex conf
changed tags condition to 4 chars
changed ted videos to iframe format
upload
Merge branch 'master' of github.com:hleclerc/Soja
remaining attribute in upload
Added to crossover the class and function for cxERX
Signed-off-by: aarribas <andres.arribas@gmail.com>
fixed bugs, added stdin-options for join
Required field. +Polishers: CapitalizeEach, NormalizeSpace
Delete partial new
Update doc/Funkcni_pozadavky.txt
Fix SQL injection via nested hashes in conditions

Signed-off-by: Ali Ibrahim <aibrahim2k2@gmail.com>
Date filters
Links
基本完成了之前的版本的MVC改造

还是存在问题的（1）如何处理C的V的对应关系（2）其中很多东西的命名规范还是需要确定下来的。
移除sync_dirty_buffer提高IO速度
150KB/s -> 2.5MB/s
Changed: Online->Available, Offline->Not Available
Fix Breadcrumbs
Added sample RPC APIs.

One API requires authentication and lets the user change their email address on record. The other doesn't require authentication and simply let's them leave an email address for the mailing list.
Added basic RPC API tests
define bulk synchronous parallel interface
renamed receive functions
interfaces for bsp and ibarrier
added a simple terrain
fixed spherical camera rotation
added zoom in/out for the camera
avoid infinite loop for large messages
code shorted
some namspace improves
b2
delete test 01
Revert "delete test 01"

This reverts commit ebeb121421d444a583e9c603ec041de2625576be.
Merge pull request #1 from ievris/step1-b2

Step1 b2
add 'update' as special path component; reorder url mappings from more to less specific
Mention gem for JRuby users.
Handle module initializers from non-default class loaders

When a module is loaded in a custom class loader, we really want the
initializer to be run.

In general, let's try to avoid at all cost to pass around class names
when passing around instances of Class makes more sense.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Java 'script service': fix executing DynamicCommands

To execute a DynamicCommand, the PluginService needs to be able to find
the PluginInfo since it is asked to find the PluginInfo for the current
Command when the context gets set.

In the same run, we need to make sure that the Plugin annotation is known
to the PluginInfo. Otherwise the ModuleService cannot find the
"initializer" setting, for example.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Avoid a NullPointerException when running commands without Plugin annotation

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
EventHistory: fix section header
EventHistory: migrate to imagej.event package

There was no Swing-specific logic nor other dependencies, and the
EventHistory is a generally useful feature.
Eliminate SLF4J dependencies from ij-core

The SLF4J-based log service has been split into its own component in
core/log-slf4j. This component can optionally be added by downstream
code that desires SLF4J-based logging. But by default, ImageJ now logs
to the standard error stream. (We may change this in the future, but it
is good enough for the time being.)
StderrLogService: add javadoc
StderrLogService: eliminate redundant code
StderrLogService: make the service lower priority

This makes it easier for alternative implementations (e.g., the
SLF4JLogService) to take precedence.
IterableSubsetView: fix compile error

Some previous refactoring was incomplete. I have fixed this to
get code building again. I have emailed Christian and Tobias to
check that fix is correct.
Merge branch 'master' into measure-engine

Incorporate changes from master that fixes compile errors
first work
image is not a template anymore, various changes
Merge branch 'master' of github.com:imaglabs/qcli
var name should reflect meaning, rename ObjectClass obj to oklass in qdev_device_add
Addapt device_add for using none DEVICE objects

Signed-off-by: Igor Mammedov <imammedo@redhat.com>
Comments starting Chapter 3, and one more for Chapter 2.
完成多线程版本server
file re-organisation
replaced switch statement with dispatch function
replaced eachArgument with reduceArgs
'begin' evaluation uses forEach
json helper for Decimal and iterables
(6.3.0 issue)single login from dashboard through which user can access ui-fw
Merge branch '6.3.x' of git://github.com/intalio/tempo into 6.3.x
CMake update (new macro)
C-style string "dummy" string reader.
typedef added for readability and further introducing extensible parsers
dothrow() declared no-return.
Miscellaneous functions: declaration reorder + find_in_string_array().
Extensible string parser framework: enum parser generator.
Reordered declarations in parser framework; separated impelementation.
Merge branch 'master' of git://github.com/yui/yui3
Removed excess CSS from Querystring tests for @reid
suggestion for http://yuilibrary.com/projects/yui3/ticket/2532215
Setting different concurrent grover tests if not in travis for faster local testing
Fix issue where nodes that were created after the widget was shown caused it to hide, because the test for nesting depended on ids
s/setContent/setHTML/g in app docs
Fix typo in App user guide.
Merge branch 'live-docs'
Merge branch 'master' of git://github.com/yui/yui3
Initial WIP splitting out table view
Initial WIP splitting out table view
Merge branch 'tableView' of github.com:lsmith/yui3 into tableView
Allow for setting linejoin to bevel in canvas implementation. Fix #2532305
Graphics build files.
More graphics tests.
Fixed dd-gestures module api docs
DD source file build for live-docs
Fixed DD build after merge
Fixes #2531647 - Add cssstamp el to body if it exists

    If it does not exist, append it to the
    documentElement.
Seed Build for #2531647
Add pictures and indeces
try running apt-get update first
add gdal back to the install requires file
max turbo score of 250
compile new assets
fix timezone on dashboard to use shorttime method
enable the ability to delete sensors
add browser-based emails for dev and set remember me to true
ensure assets are compiled
License Update - Classification Null bug fix
Merge pull request #220 from terracatta/master

Fix timezones and Delete Sensors
Merge branch 'master' of github.com:Snorby/snorby
pack assets
new version 2.5.2
update notification should use ssl
pack assets
Merge remote-tracking branch 'snorby/master' into cloud
getXIDNick() now complies with gateway contact nicknames
No resize for textareas
cache implemented to Mapper class - needs testing
Formatter#render -> Formatter#format

It makes `formatter.format(lexer.lex(code))` easier to remember.

Formatter#render will leave a deprecation warning
Lexer#tag delegates to the class
factor out Lexer.find_fancy
make a note of why I'm doing all this weird stuff
get rid of ScanState, and just use the lexer itself
no more awkward calling methods on .lexer
#30 quiz delete is fixed in isites
fixes #30: question delete fixed in isites
fixes #32: request param 'state' is used by isites, form needed to call it something other than state for isites
Update - conversation lifecycle event test
seperated instruction pointer helper functions
Use an example with minified variables.
Initial source map spike.
Tweak how line mapping is done in SourceMap.
Remove unneeded normalize() call.
Add mapping output to source maps, testing in Chrome 19.
Make source map JSON a bit prettier.
Minor formatting tweaks to SourceMap.
Change example to try out relative file paths.
Replace generated_file with output_file in the API.
Allow a line offset to be set for source maps so the user can say where in the file the minified code will begin. This helps with e.g. adding copyright comments in minified files.
Calculate line offsets without modifying the line endings.
Add support for multiple source files in source maps.
Add a bit more data to multisource tests.
Change key order in segment data.
Export SourceMap#filename.
Fix some path references in source maps.
Add Packr.bundle() method to simplify task of bundling many source files into a single one with a source map.
Move path expansion logic from SourceMap to FileSystem.
Add :header to the list of options accepted by pack() and use this to replace the :line_offset option.
Don't need Rack for development.
Pass :protect option through the bundler() method to pack().
Add DataSource source to AutoComplete manual test.
Remove beta label from Test Console.
Make Uploader's "deprecated" label match DataTable's.
Updated DOM Docs, no code changed
DOM build after doc changes - No min files harmed
Leetle typo feexes
Merge branch 'master' of yuisource.corp.yahoo.com:yui3
Copy edit for toJSON API docs
Build model with API doc tweak
Round two copy refinement.
Build model with toJSON API doc update (take 2)
Fixed typo in code snippet examples. Fixes #2531937
Merge remote-tracking branch 'upstream/master'
Panel's default "close" button now prevents default on the button event.

Panel's "close" button was simply calling the panel's `hide()` method,
which allowed the button's default click action to still happen. When
a Panel is rendered inside a form this is an undesirable consequence
because the `<button>` element will submit the form.
Built Panel.
Merge branch 'panel-close-button'
fixes #2531930 - dial docs images IE6 transparency issue + path
Gallery bump for Loader
YUI and Loader build for latest Gallery build
Module Doc Updates
Cheques - BIND DMZ (Fix menor).
template del envio de mail para cheques
cambio campo cuenta destino
next
Merge remote-tracking branch 'origin/master'
Fixing page_view widget
silly url error
added forum endpoint
added default view
basic forum listing
First step to generate an egg.
It seems its time to release the beta!
rename media -> static
DocString typo
use new startup way
raise error if local settings not found
bugfix in debug info
Edited the model to add more specific fields.
JERSEY-1460: Handling null values returned from
javax.wx.rs.core.Application

Change-Id: I008d43565284418daba66a567c950a737d7d6663
test
test
Merge branch 'master' of https://github.com/jill8668/test.git
New version 2.1.15 now includes better error logging and configuable time outs
added iterator to DataSet
More unit tests. They all pass. Still need more to test all the mappings, but this covers the basics.
drivers: can: fix bus-off handling for AT90CAN128

Instead of being silently ignored, a bus-off interrupt should generate an error on all ongoing transfers and reinitialize the CAN controller.

Signed-off-by: Jeppe Ledet-Pedersen <jeppe@satlab.org>
Added average page size to statistics
Add support for changing privileges on tables, functions and other objects.

 * pyrseas/dbobject/__init__.py (DbObject.diff_privileges): New method
   to compare privileges between current and input objects.
 * pyrseas/dbobject/function.py (Function.diff_map): Call
   diff_privileges.
 * pyrseas/dbobject/privileges.py (_expand_priv_lists): New function
   abstracted from code in add_grant.  (add_grant): Move parts to
   _expand_priv_lists.  (add_revoke): New function to return REVOKEs.
   (diff_privs): New function to compare privileges in detail.
 * pyrseas/dbobject/schema.py: Pep8 edit.
 * pyrseas/dbobject/table.py ({Sequence, Table, View}.diff_map): Call
   diff_privileges.
 * pyrseas/testutils.py (InputMapToSqlTestCase.std_map): Update with
   owner and privilege information for the public schema.
 * tests/dbobject/test_privs.py: Add tests for verifying new support.
fixed assert and exit to flush tree + disable secondary cores
Remove generic type T from DistributedThreePhaseCommitManager; add committed and prepared to ThreePhaseCommit
update calling convention of other traits too
Auto-update: 22-May-2012 13:49:43
Better video podcast support. Resizing video now supported. A bugfix or two.
Bug 805829 - Add test-container app to launch test harnesses from an oop iframe, r=fabrice
Bug 805708 - Support for the remaining bluetooth commands in the Dialer
r=vingtetun
Merge pull request #6150 from etiennesegonzac/bug-805762-bt-remaining-commands

Bug 805708 - Support for the remaining bluetooth commands in the Dialer
Merge pull request #6122 from ahal/shim

Bug 805829 - Add test-container app to launch test harnesses from an oop...
Merge remote-tracking branch 'b2g-gaia/master'
Update vignettes/parsing-PID-pathway-data.Rnw
handling circular data.
launchy
convert cucumber to rspec (rspec wip)
remove jquery-ui
(BROKEN) created view and stuff for issue-feature
Finish new issue feature
Update gem summary/description. Increment minor version
Added uploadservice
Added filesTable tag
Fixed tinymce resources issue
PolyLineShape transformation
added several smaller optimizations
fix unknown count
add some more debugging
draft handling
remove unneeded insertCss method
fix emailAddress find
* prevent multiple invocations of Gmailr.init
* make sure passed callbacks are really methods before using them
Simplify jQuery( html, props ), closes gh-765.
Add component.json for BOWER
License
Organize package and make distributeable
Ignore setuptools manifest
accounts for number of lines in coalescing
Merge branch 'master' of https://github.com/jreucy/hagoop
accounts for number of lines in coalesce
The forms controller now has a search action, accessible via requests to both SEARCH /forms and POST /forms/search.  Pagination in SEARCH /forms and GET /forms now operates identically.
mysql_charset param set to utf8 in all tables of the model.  Now the tests will pass on a MySQL db whose default character set is not utf8.
Added some tests on REGEXP and LIKE searches: with both RDBMSs these searches are case-sensitive and basic regex patterns work (e.g., beginning and end of string anchors, quantifiers, sets, etc.).
Relational searches now use aliases for table/model references, thereby enabling searches based on multiple relations, e.g., "give me all Forms with a Tag named X and another named Y".
Verified that deleting a Form results in its glosses being deleted also.
Verified that deleting a form does not delete many-to-many or many-to-one relations (e.g., files and speakers)
GET /forms now permits orderBy GET parameters: orderByModel, orderByAttribute, orderByDirection.
Implemented PUT /forms/update_morpheme_references which refreshes the values of morphemeBreakIDs, morphemeGlossIDs and syntacticCategoryString for all forms in the database.  Also fixed a broken test (test_search_y_paginator) in test_forms_search involving invalid paginator params.
Implemented files controller/resource with search and tests.
Added the test_files_search test script and the test_files directory to the previous commit.
Added the large old_test_long.wav file to .gitignore.
Modified tests/functional/test_files.py so that the test_create_large test works even when the old_test_long.wav file is not present in test_files.
updates to docs/style
Removed print statements
Removed print statements
Updated internal API from _getApps to _getRunningApps as pyatom API have changed
Added 2 new APIs hasstate, getallstates
Added 2 new APIs hasstate, getallstates
Merge pull request #34 from nagappan/master

Added new APIs, removed print statements
Updating changelog and readme for 1.0.0 release
updated timelaspes
Added missing symbols
Merge branch 'master' of https://github.com/jtimon/config
A more extended Readme.md and update package info
Removing vertical scroll bars from code examples
Fixed navigation buttons doubling when erasing a save
delete DS_Store
delete DS_Store
enhancements from kapsa integration
Readme updated to show Travis CI build status
Merge branch 'master' into feature/travis_ci
Activates Travis CI for all branches
Merge pull request #36 from justahero/feature/travis_ci

Added Travis CI build status to readme
TEST EOL
Reverted to before the goofy change with set_item/get_item things. Those changes are in the wrap-exper1 branch.
UPDATE added annotations, javadoc and other stuff
Update 2011-08-18-BB-ROUTER.md

Correction d'une faute de frappe
Merge pull request #6 from michellaurent/patch-1

Update 2011-08-18-BB-ROUTER.md
added parallel corpus loader
Added completely hierarchical semantical structure support, storage to BlobStorage as DataContract serialized
store and transfer user name
More work on viable version.
readme note for 9/18/12
Removed unused printTrans method from message class. Created case-specific messaging exceptions in the message header file (removed CycMessageException from CycException.h). Consolidated duplicate code in the three constructors. Renamed a few methods and variables.  Improved some comments.
cleaned up/improved message class comments more.
renamed some_variables to someVariables.
moved private members and methods down lower in the message header.
moved implementation of many message methods to cpp file.
deleted unused message 'reverse' method. reordered message methods more nicely.
changed var names back to use_underscores
updated comments with directives.  However - left transaction related comments alone becuase they will be overwritten with changes/new-improved comments in my transaction class refactor which is nearly done.
I read, tested, and ran a number of the standard input files against this change. I made some general style comments, but it looks good. Thanks for complying. 
Merge branch 'develop' into cleanups
reinstantiated some adjustments overwritten in merge.
Remove reader monad from the Ox monad stack, add example
Add 'in' qualifier in genetic_map_functions.d
Add 'in' qualifier in make_map.d
Add 'in' qualifier in qtl/core/map/map.d
Add 'in' qualifier to recombination_fractions()

  - required a change to get_position() within primitives.d
moved stat files from root to statData.  changed name of file containing the main loop from kirby_s_game_of_conway.pde to gump.pde
Better commenting for config variables
mariozzoloscagnozzo
Update trunk
Merge pull request #1 from yjw2288/patch-2

Update trunk
webapps/docs/appdev/index.xml
수고하셨습니다.
Added Account overview and Template file
add test for premature socket close
Add links in header.
package structure added, now is an eclipse project you can import to
work with directly.
what changs here for mytk.c
Document.last considers default scope.

Fixes #1974.
Merge pull request #1980 from i0rek/last

Document.last considers default scope.
Use p125 explicitly
Don't always include perftools
Allow added, unloaded and loaded as scope names. Fixes #1972.
Don't double-wrap arrays on fk criteria where a many to many is in play. Fixes #1969.
Rename Accessors#build to __build__. Fixes #1971.
Fix multi-level hash update w/o nested attributes. Fixes #1936.
Back to latest 1.9.3
Uniqueness validation now works with localized fields. Fixes #1953.
Dont require reload after setting foreign keys. Fixes #1182.
Don't eager load if base query returns no results. Closes #1976.
Reimplement Criteria#multiple_from_map_or_db:

- This implementation is far better than the previous
  map/partition/select implementation.
Update changelog to reflect safely removal
Fix skip and limit on initialization of memory context
Return self in Document#each.

Fixes #1991.
Merge pull request #1992 from i0rek/each

Return self in Document#each.
Fix performance of cascading delete. Fixes #1994.
introduce read consistent demongoized cache fixes #2002
Bring #1987 into master
Docs: updated method of running chotha as service with launchd
Changes to vimrc and khr colorscheme
Moved pathogen infect
Nitpicking.

- add rpm and tar.gz to gitignore.
- silence compiler warnings.
Added digital stuffz
patches: copy DLLs into package
Add note about running the tests
Merge pull request #526 from mjijackson/readme

Add note about running the tests
Add Hive Plot example.
Merge branch 'master' of github.com:mbostock/d3
Optimize thin links.
dodanie funkcji pt (odczyt/zapis punktu) do biblioteki Lua PRO-2000
show error if DEVROOT is not found on the disk
CLOSED - task 2: Kkppccdd 
http://github.com/kkppccdd/lisy/pull/2
made it so that if a user calls participate with a player the last time
interacted get's updated. also wrote a test to confirm this
Added links to clients
Added some better error reporting for libmods. still need to test
409 reporting for libmod bad adds is now working
same test data added
Stack ist Zustandsorientiert
testbench: add fork, indirect new_thread

The latter is slightly nontrivial due to the per-space privilege mechanism in
L4.X2: forkserv would like to call a helper thread in the original testbench
rootserver, which is paged by forkserv. This classic IPC dependency makes the
resulting pagefault message look like it was a reply to the dependant IPC,
which is especially funny when the next IPC call looks like a response to the
pagefault message.

This issue is solved with a helper thread and a simple queue operated with
atomic instructions. The forkserv main thread also responds to a one-way
"about to sleep" message to combine IPC wait sleep with a "happens-after"
check of per-instruction atomic state, solving the read-to-sleep race
condition.

This changeset works up until the child process wakes up. It should receive a
wakeup message from the parent process but doesn't: additionally, as its KIP
will be misconfigured a call to Ipc would segfault (albeit correctly). To make
the tests complete, the parent-side of fork() uses a 200ms time limit on the
initializing send. This should be removed once the child does pick up.

Threads created via forkserv will have priority 80 so that they don't start
before their pager TCR has been re-set right after a breath-of-life. This is
strictly the wrong thing to do, as breath-of-life should be sent in response
to a CHOPCHOP_REPLY, but w/e. Call it a TODO.

Forkserv still has a bit to go until it'll start really requiring a working
Unmap.
testbench: key thread_hash by ThreadNo in forkserv
testbench: copy kip_area in handle_fork()

Instead of making one up at the SpaceControl call site.
space: handle nil in {kip,utcb}_area correctly

I.e. at all like the spec says.
testbench: add simplest test case for Unmap

This doesn't test: unmap of only write permissions, access queries,
deeper hierarchical cases of the previous.
packageTool：nodejs打包工具
needed parentheses there..
Fixing testsuite
MDA test program (not working yet) + New JZON version (use git pull --recurse-submodules to pull)
repair

in the future
new KSetBytes
Update `database:dump` to also dump local/remote MongoDB databases
Fix query fields (add missed 'id' to all_fields)
Check if SCREEN parameters are there.
Android Gdx.net backend implemented for sockets (code duplication from LWJGL backend). Updated dock for "backlog" (ServerHints).
Merge pull request #50 from noblemaster/master

gdx.net for Android implemented (sockets)
TextField, fixed click to set cursor with right align.
LwjglFrame, allow initialize() to set size and/or position.
First post and somehow stable style and code.
Minor improvements & fixes
Add shallow nesting to the routing guide
List instructions in the order to be executed
Capitalize all table column titles in routing guide
[Guides] Add sprockets to list of loaded frameworks
[Guides] Update ruby version check
[Guides] Add extract_options section
[Guides] Rewrite Rails application section
[Guides] Add core_ext/object section
[Guides] Update rack example
add spawn guard func