Weka Segmentation: added experimental max pooling methods.
TrakEM2: removed obsolete dialog choice from alignment dialog
Cover Maker: use precise accessor syntax

For some reason, imp.processor returned a boolean here...

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
TrackMate_: make Dog segmenter single-threaded

It is called in multi-threaded fashion anyway, and having it
multi-threaded seemed to cause conflicts on win32 platforms.
Signed-off-by: Jean-Yves Tinevez <jeanyves.tinevez@gmail.com>
TrackMate_: fixed a displayer unregistering problem

In the GUI, there is only one instance of each displayer. This faulty
design caused one of the instance to be unregistered when using the GUI
and re-questing a displayer for the second time.
Waiting for a more proper design, stop un-registering.
Signed-off-by: Jean-Yves Tinevez <jeanyves.tinevez@gmail.com>
Remove source file that was never used

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Convert spaces to tab in Fakefile

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Fiji Build: refactor method to strip ijDir from paths

... i.e. make relative paths from absolute ones.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Fiji Build: make sure that rule.getDependencies() result is complete

Some .jar files in the CLASSPATH are given as absolute files.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Fiji Build: use makePath() when the path might be absolute already

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
MiniMaven: really also look in Fiji's plugins/ directory for dependencies

This is required for mpicbg_.jar and TrakEM2_.jar which are both not yet
Mavenized.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
MiniMaven: support activation by property

This is needed because we want to build with -target 1.5, but Eclipse's
compiler is real strict and does not allow us to compile code with
new-style @Override annotations. So the next commit will change the
top-level POM to force -target 1.5 only when building outside Eclipse.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
MiniMaven: try even harder to fall back to jars/ and plugins/

With the Mavenization, a few Fiji components will be marked with -SNAPSHOT
versions, so let's fall back to our own stuff for such versions, too.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Move help-cursor.gif directly into fiji-lib's sources

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Copy icon.png directly into fiji-compat's sources

This will help the Mavenization of that component.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Use new version of scijava in plugins' pom.xml

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Fix VIB-lib's pom.xml

... so it builds with real Maven.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Update Fiji version to 2.0.0-SNAPSHOT in pom.xml files

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Bend over for Eclipse's compiler

Eclipse's compiler is real strict and does not allow us to compile code
with new-style @Override annotations. So change the top-level POM to force
-target 1.5 only when building outside Eclipse.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Remove unnecessary UTF-8 encoding block

This is already declared in the parent pom-scijava POM.