labofsahil/github-event-dataset-2012 huggingface dataset:
Added tests for Bio::PrimarySeq::length()
More tests for Bio::PrimarySeq::length()
POD updated and beautification
More tests for Bio::PrimarySeq::length()
Bio::PrimarySeq::length() optimizations

Calls to length() were quite slow for long sequences, e.g. multi MB genomes. This is because length() calls seq() which passes the returns the entire multiMB sequence. A solution to this was:
1/ calculate the sequence length at the same place where the sequence is set, i.e. in seq(), to not have to pass the entire genome bach and forth between functions
2/ store the sequence length once computed to avoid having to recalculate it

This results in much speedier calls to length()
Consistent indentation
SeqFastaSpeedFactory fix

Since last improvements in Bio::PrimarySeq, SeqFastaSpeedFactory should store length of sequence to produce working Bio::PrimarySeq objects
Consistent indentation
Cosmetic changes
Fixes issue in EncodedSeq

EncodedSeq needs to use seq() methods of PrimarySeq objects and not
poke into object directly to avoid reporting wrong sequence length.
More tests for PrimarySeq
Doc fixes
Small POD and tests updates
PrimarySeq direct mode fix/improvement

A -direct option exists in PrimarySeq to skip any sequence validation.
However, the documentation lets one think that it was effective for
sequence strings passed to -seq whereas it actually only works when
passing a sequence string reference to -ref_to_seq.

I made it so that -direct is effective for sequences passed to -seq
or seq() as well, more in line with what the documentation states.
POD update and more consitent variable names
Removed unneeded method

Removed method direct_seq_set() which was undocumented and not used anywhere in bioperl-live
PrimarySeq::seq() modularization

Modularization by adding a new private method _set_seq_by_ref(), which will be
handy in upcoming change.
Small fix in validation error message
Small changes in seq() for clarity
Constructor -ref_to_seq fix

The constructor -ref_to_seq to make a new Bio::PrimarySeq object based on a
string reference (instead of string) was not honored unless the -direct
constructor was also passed. This was not a documented behavior, and there is
no reason that -ref_to_seq has to be passed with -direct.

One can now use -ref_to_seq and -direct independently.
add a missing space in the footer, remove an extra period
Merge branch 'master' of github.com:bitdeli/bitdeli-docs
add service stub to test config
Maintain row index when editing
Fix for implicit point drag
Expand the example
a lot done, no idea what exacly
event form made more intelligent
event form ie bug fixed: option, always use dom-methods for ie
more features added
Incorporated paul dijou's pagination markup -- fixed a typo
Trim Label Field
netio test 656k tx ,391k rx config
Added activeadmin gem
Removed xmpp transport layer
merge fix
adding customers also viewed to pdp
Final version of bayesian model. Added synthetic testing procedure with metrics.
destroying walls
Works with ruby 1.8.7
commit rails generated
sae sqlalchemy
Connect wufoo form to contact page
Minor tweaks
Commit before adding new branch
Fancybox works
Latest Build
Fix fancybox css linking error. Modify fancybox behaviors
forgot to save
Migrated to a server, using backbone-relational and mongoose
removed some files
Finished mongoose save bug, added labels to articles
Started adding plays
More work on integrating plays
fixed several bugs for navigating through plays
cleaned up some code, added notes for tomorrow
removed files
Creating site for 0.1-PoC
Flip this test around since it's safer to assume the dev mode is tun. Ticket #2432
Ensure conf_mount_rw and conf_mount_ro are matched

On nanobsd, running /etc/rc.update_bogons.sh gives:
[2.1-BETA0][admin@test02.homedomain]/tmp(12): /etc/rc.update_bogons.sh 1
/etc/rc.update_bogons.sh: cannot create /etc/bogonsv6: Read-only file system
The code does 1 conf_mount_rw but 2 conf_mount_ro
This is also seen in system.log:
Aug  2 17:47:59 test02 admin: rc.update_bogons.sh is starting up.
Aug  2 17:47:59 test02 admin: rc.update_bogons.sh is beginning the update cycle.
Aug  2 17:49:27 test02 admin: Bogons file downloaded:  1 addresses added.
Aug  2 17:49:29 test02 php: : Reference 1000 is going negative, not doing unreference.
Aug  2 17:49:29 test02 admin: Bogons files downloaded:  no changes.
Aug  2 17:49:29 test02 admin: rc.update_bogons.sh is ending the update cycle.

The V6 bogons file does not get applied because the filesystem is RO by that point.

I have reviewed the whole logic of this shell script. I believe it handles the various cases correctly now. On nanobsd I get the following in system.log:
Aug  2 18:17:13 test02 admin: rc.update_bogons.sh is starting up.
Aug  2 18:17:13 test02 admin: rc.update_bogons.sh is beginning the update cycle.
Aug  2 18:18:02 test02 admin: Bogons V4 file downloaded:  no changes.
Aug  2 18:18:10 test02 admin: Bogons V6 file downloaded:  58959 addresses added.
Aug  2 18:18:52 test02 admin: rc.update_bogons.sh is ending the update cycle.
Merge pull request #201 from phil-davis/master

Bogons updated - make sure conf_mount_rw and conf_mount_ro are matched
Update gitsync with latest changes from master branch

feef287ead62815b1a67bac15ebaa2d36226d4e2 - Remove obsolete files after gitsync
26b8990538c71c99df8e95fd5fada57f79465d93 - Move some constants in gitsync closer to the top of the source code and add some new ones of potential interest to those reconfiguring gitsync.  Also modify messages to indicate that Git URLs are also allowed.
ae26412f3d156989daa2196db92be2fa47a441b2 - Move git package name/URL to the configuration variables section.
fix for #2289: Logic error in firewall rule interface selection for drop-down menu case
Add new logging tests for rollback handlers. Create an abstract test.
Fix values not written out and read correctly to the logging.properties file.
[AS7-5724] Fix rollback handlers for logging subsystem.
Formatting updates for builders.
[AS7-4718 & AS7-5169] Support expressions on various attributes. Note that resolved values are written to the logging.properties file. Therefore expressions aren't resolved until the logging subsystem kicks in.
Restore default ObjectTypeAttributeDefinition marshallAsElement behavior
StringListAttribute should support expressions
AS7-5209 reenable StatefulWithXPCFailoverTestCase
Fixing SOAP-over-JMS testsuite regression
ejb3 subsystem support for expressions

* cleanup of the parser
* always use resolveModelAttribute & parseAndSetParameter
threads subsystem expression support

* reworked parser
reset respawn count for managed processes
register reconnecting server proxy
AS7-5242 re-enable the RespawnTestCase
AS7-6120 update jacrob subsystem to support expressions
AS7-5306 re-enable DomainControllerMigrationTestCase
AS7-6150 Upgrade JSF based on Mojarra 2.1.16
fix typo in VIRTUAL_NODES
AS7-4088 Add system properties for commonly parameterized mod_cluster configuration
AS7-4088 reject expressions for previous model versions
Refactor side-bar to a layout template
Also render comments, add "noComments" class to commentless topics
add verify and shot time
ADD: new class IntegerPair.java
added code to create training and test datasets
Okay, now added bin
Update getFirst, getLast and alias in Array
Revert "Save dcc files to ~"

This reverts commit 989cb3a619671e6ab3a0a040edd4fff0c277dc18.
fixed email promise
updated remarks
Updated _posts/articles/2012-09-18-gamification-is-not-about-games.md
Ignore compiled CoffeeScript files
Fix socket permissions, fix nginx development paths
fixed build process
publishing production files
agregue una nueva vista
forgot to added initList to prefListener per chap 13 step 6
added onSaveInstanceState method to lunch list to save the current text
of the text fields so that when the view rotates the fields will remaind
populated. per chap 10 extra credit 3
viele sachen
Adding message rx ack
default layout correction
Se implemento boton para regresar a las redes sociales del cliente
added most pop courses
created a better dailyreport script and a python module to help make command line scripts simpler in python
Mips specific llvm assembler support for ALU instructions. This includes
register support. Test case included.

Contributer: Vladimir Medic
80 col.
Unbreak the MSVC build, that next() thing again.
Refactor and speed up DFA generator.

Patch by Ivan Llopard!
Fix regression in r168477. Use canonical decl when looking for base class
specified as a qualified name.
WIP snapshot of hardware watchpoints for arm.  A simple watchpoint has triggered.
However, the debugserver cannot get past the instruction which triggered the watchpoint.
So a workaround is in place for the time being which disables the triggered watchpoint
before resuming.

Lots of commented out printf's remain in the source which needs to be cleaned up.

WIP rdar://problem/9667960
Verify the consistency of inline asm operands.

The operands on an INLINEASM machine instruction are divided into groups
headed by immediate flag operands. Verify this structure.

Extract verifyTiedOperands(), and only call it for non-inlineasm
instructions.
Fix PR 11709: Change the definition of va_list to meet AAPCS requirement

AAPCS ABI Section 7.1.4 [1] specifies that va_list
should be defined as struct __va_list { void *__ap;};
And in C++, it is defined in namespace std.

[1] http://infocenter.arm.com/help/topic
         /com.arm.doc.ihi0042d/IHI0042D_aapcs.pdf

Patch by Weiming Zhao.
Fix instruction description of VMOV (between two ARM core registers and two single-precision resiters) (and do it properly this time!
Remove unnecessary 'llvm::'.
[asan] two more bits for __sparc__
Finally add myself to the credits.
Make building of llvm-jitlistener conditional on the USE_INTEL_JITEVENTS setting.
Move the functionality that looks for ObjC overridden methods from
ASTContext to the ObjCMethodDecl, and have the more generic
ASTContext::getOverriddenMethods() use the ObjCMethodDecl::getOverriddenMethods()
function.
Comment parsing: don't treat typedef to a typedef to a function as a
'function-like' type that can be annotated with \param.

Thanks to Eli Friedman for noticing!
Initial check-in of "fancy" inlined stepping.  Doesn't do anything useful unless you switch LLDB_FANCY_INLINED_STEPPING to true.  With that
on, basic inlined stepping works, including step-over of inlined functions.  But for some as yet mysterious reason i386 debugging gets an
assert and dies immediately.  So for now its off.
Implement the ELF reader.  The original implementation was by Hemant Kulkarni
with subsequent changes to use lower level interfaces done by me.
Further simplify parallelism test
Revert r167540 until regression tests are updated.
Revert remaining part of r93200: "Disable folding sext(trunc(x)) -> x"

This fixes PR5997.

These transforms were disabled because codegen couldn't deal with other
uses of trunc(x). This is now handled by the peephole pass.

This causes no regressions on x86-64.
Don't use SourceLineCache in getColumnNumber if LastLineNoResult is past the end of the cache. Fixes PR14570.
Simplify RegisterCoalescer::copyCoalesceInMBB().

It is no longer necessary to separate VirtCopies, PhysCopies, and
ImpDefCopies. Implicitly defined copies are extremely rare after we
added the ProcessImplicitDefs pass, and physical register copies are not
joined any longer.
Another place where implicit type conversions sometimes occur, eg when compiling
slasq2 from lapack with the GCC optimizations enabled. I didn't manage to reduce
a small testcase.
Move vinsertf128 patterns near the instruction definitions. Add AddedComplexity to AVX2 vextracti128 patterns to give them priority over the integer versions of vextractf128 patterns.
Fixed a typo that caused an error when exchanging tokens.
ignore update
model stubbing
Base model
Comment and Exlanation models
explain admin
profile app
merge conflicts
added cucumber dendencies and a sample test case
delete test.exe
add sfMake project
sfMaker first version
sitemap on text page
Tab replaced with space
Some quick select work
Make get_streams always return a dict.
Added PluginError exception to make error handling nicer.

Also added a utility function to do HTTP requests.
overflow hidden, take scrollbar off?
Ensured phpBB forum driver still runs, and fixed others, and misc fixes
add some missing stuff for BFQ
New post moved from github pages.
Overhaul Character menu and give it a config file
Remove unused files
Merge pull request #631 from dorkster/menu

 Overhaul Character menu and give it a config file
switch back to small ts file
Switching sort order
Fix framework runtime info

Change-Id: I7d602fc20b50031028640cf3bec531e2ffa67662
Merge "Fix framework runtime info"
v1 App#stats: string keys

Change-Id: If3dc5021e89acecf16acc2da52b62768a9cd93cc
new engine termination logic
alternative way to poll zeromq sockets, might reduce context switching
Remove unused function and shared modules.
Add background ensureIndex() to ui.js startup.

* config/app.js: Move 'eventCollection' definition into 'collections'
  object.
* config/app.js: Add 'indexes' array.
03/08/2012 15:49 - changed snapshot to show for all stores, assuming snapshot exists for store
03/08/2012 17:18 - added resized screenshot based on aspect ratio
03/08/2012 17:59 - changed Snapshot XML to show snapshot in the middle
- no use for image_resize function in Snapshot.java
06/08/2012 14:56 - added Testing Directory to WTE, called TestDirectory.java
- also added Directory.java which will show map.
- BUG : Nearby does not show images...
add Enumerable#toString()
always wrap arrays
lazy load assets
changing alert to console
Adding a hostname and eliminating some scaffolding comments.
deleted README generated by rails
Added seed fu fixed gemfile
Added stor + mechanics and idea to README
Added xp and type to characters
styles for links commented from css html5boilerplate
html5boilerplate style
Fixed valgrind warnings

* set_bits sometimes accessed a few bytes past the end of a block.
* The write buffer in iobuffer.c would add uninitialized bytes to the
  buffer if writes skipped forward in the file.
* testapp sent entirety of partially-initialized string buffers as keys
  and values, causing valgrind to complain when the keys/values were
  read. Fixed it to only use the actual strlen of the values.
* That then exposed problems in couchstore_save_documents when a doc's
  rev_meta_size is small; basically, the buffer-size computation was not
  accurate, causing the buffer to sometimes be too small.

While I was at it I modified the error handling macros to invoke a new
report_error function (in the debug build) so that one can set a break-
point there and catch errors as they happen. This helped me track down
the couchstore_save_documents bug.

Change-Id: Ic388a9d95ae520014ca706f28fc0108ac5906490
Reviewed-on: http://review.couchbase.org/14942
Reviewed-by: Trond Norbye <trond.norbye@gmail.com>
Tested-by: Damien Katz <damien@couchbase.com>
Reviewed-by: Damien Katz <damien@couchbase.com>
Print on mcsoda exceptions.

Change-Id: I44c9982416ee9c58b7756096ab00d0ddb8857749
Reviewed-on: http://review.couchbase.org/15171
Reviewed-by: Ronnie Sun <ronniedada@gmail.com>
Tested-by: Steve Yen <steve.yen@gmail.com>
MB-100: modified confs

Change-Id: Idea4356066ec54fbb6fc0bae8e1305825f68498e
Reviewed-on: http://review.couchbase.org/20046
Reviewed-by: Ronnie Sun <ronnie@couchbase.com>
Tested-by: Ronnie Sun <ronnie@couchbase.com>
EVPerf: rotate host by prefix modulus, to not overload servers[0]

Change-Id: I2d146b9de79c1f54bbe45cada01d035d2be2c5d8
Reviewed-on: http://review.couchbase.org/15468
Reviewed-by: Ronnie Sun <ronniedada@gmail.com>
Tested-by: Steve Yen <steve.yen@gmail.com>
MB-100: curr_items_tot wasn't found in bucket stats

added logs to get actial value of rest.get_bucket_stats in case of failure

Change-Id: I4b3ba9e71e9d81369ef4341c0b460ebbe9a866a8
Reviewed-on: http://review.couchbase.org/21634
Tested-by: buildbot <build@couchbase.com>
Reviewed-by: Andrei Baranouski <andrei.baranouski@gmail.com>
CBQE-241: Reset data path for swaprebalance

This is a temp fix for 181 testing

Change-Id: Ia6bee3357a491c9cbddd8fad70eff254a3ffcdb1
Reviewed-on: http://review.couchbase.org/17277
Reviewed-by: Karan Kumar <karan@couchbase.com>
Tested-by: Karan Kumar <karan@couchbase.com>
add tests rule to Makefile
Define Atom class
Alias "vim" to "vim -p" to always open multiple files in separate tabs
Update banner creation spinner.
Unlink account
Hook up account link form to backend.
Correct admin interface link in click goal email.
Update list of published locales.
Add nl to Facebook app locale list.
Merge branch 'facebook' of github.com:mozilla/affiliates into facebook

Conflicts:
	apps/facebook/templates/facebook/base.html
	media/css/facebook.css
	media/js/facebook/common.js
Icons
Add single HTML page example
Add single HTML page example
Rewrite the mining method to objective-c
Refactored http object

Moved the http object to the initialize section as an instance var
SSL support added

Added SSL support
Updated documentation

README
0.0.2 RELEASE
Added no active record form example
shortcut keyの修正
Replace all swith/case statements by the equivalent with if/else if/else in the method proto.onToken.
Replace all switch/case statements by the equivalent with if/else if/else in the method proto.write.
Merge pull request #9 from lbdremy/prof

Performance improvement
Seriousness increased by removing the nyan cat from tests and the haikus from error messages.
Re-added the nyan cat, added a make clean
some error handling
check read bases or qualities are the same when merging two bam files, and given an option to replace base qualities in aligned bam wth the ones in unaligned bam
spelling
Add option in BamIndexDecoder to convert low quality indexing bases to no calls
bug fix to increase count for make PG ID unique
make sure AlignmentFilter PG id unique and reset bam as unsorted in header
make sure AlignmentFilter PG id unique and reset bam as unsorted in header, one more file
new jar file
BamTagStripper tool added
change tag match pattern
remove any alignment fields from a unmapped record in AlignmentFilter
BamReadTrimmer to raise an error if one of the reads is reverse-complemented
Error message refined
Merge pull request #10 from MarinaGourtovaia/master

BamReadTrimmer to raise an error if one of the reads is reverse-complemented
Read runParameters xml under top runfolder directory to get cycle range per read and instrument software name and version information, cope with dual indexing run
generate alignement filter metrics data and write into a json file using jackson json package
Merge pull request #11 from gq1/master

AlignmentFilter Metrics json file
use unaligned bam file for metrics file name if given
Merge pull request #12 from gq1/master

use unaligned bam file for alignment filter metrics file name if given
update picar lib to 1.65 from 1.52 and remove modified picard ExtractIlluminaBarcodes
Fix fonts.
Things.
Compileable docbook port.
Stuff.
Tweaks; CSS.
Tinkering with HTML.
Tweaks.
Reformatting.
Formatting tweaks.
Formatting tweaks.
Danger environment
Format tweaks.
Various tweaks to latex.
Hackery.
Colour links in black.
Clean up.
Use a Makefile.
Link fix.
Hacks to put the authors on the title page.  Only took 2hrs to find that :(
Tidy up.
Moved old scss files to less, new sidebar implementation, added email and image to user profile
Add dyndns support for gsqlite3
Rename "Debating Timer" to "Debatekeeper" in comments
Refatoring

Code refactoring and model validation in progress
Network Component

Network component handshake reviewed
Test DSL revisited
demo web page added
Tests
batch size for mv
Added destroy client action, added clients/show.
Added option to delete playlists quickly
Fixed file reading bug where last character read was bogus

    shaderCode[--i] = '\0';     // null last character filled (invalid)
before it was i++, but the eof character had already been stored
This is the same fix in all of the scenebasic files
recoded education; added education of HH head to HH characteristic data
regressions for young children
Trying out a gitattributes file

Line endings normalized.
selection -> fix try
new selection mechanism
Rename overlay to panel, use for about, hide by default
Show company info in floating panel
merged
Update net/flashpunk/utils/Input.as

cast the int as Boolean to resolve incompatible type errors as mentioned in Issue#59
Update net/flashpunk/Mask.as

updated base object's function to public to preserve inheritence in Mask children
(related to Issue#59)
Update net/flashpunk/masks/Masklist.as

preserves inheritence (related to Issue #59)
Update net/flashpunk/masks/Hitbox.as

updating inheritence (related to Issue #59)
Merge pull request #95 from erikyuzwa/patch-4

Change visibility of update method from protected to public (related to Issue #59)
Merge pull request #94 from erikyuzwa/patch-3

Change visibility of update method from protected to public (related to Issue #59)
Merge pull request #93 from erikyuzwa/patch-2

Change visibility of update method from protected to public (related to Issue #59)
Merge pull request #92 from erikyuzwa/patch-1

Explicitly cast int to Boolean to resolve incompatible type errors as mentioned in Issue #59
Merge remote-tracking branch 'upstream/master'
[maven-release-plugin] prepare release 2.0.0.0
[maven-release-plugin] prepare for next development iteration
Merge branch 'master' of github.com:dankurka/gwtphonegap
Added new "Polycode.props" file to default win32 c++ template

* This property sheet file contains common defaults for building a polycode project

* Now, a user can just load the Polycode.props file in a fresh visual studio project and get a lot closer to building with fewer manual steps

* Added "PolycodeDir" variable to Polycode.props that can be pointed at the installed polycode framework directory.

* This currently points to the same relative path that the old template did, need to find a clean way to let users override this.  Environment variable?  One of the manual steps when setting up a new project?  Some voodoo to find the current polycode install dir?

* The "VC++ Directories" config now live in Polycode.props, and are relative to the "PolycodeDir" variable.  The proper include and lib dirs will now inherit by default in a new project.  This wouldn't be possible if polycode was still installing to seperate Release/Debug dirs (maybe it is supposed to and the cmake defaults in git don't do this?)

* Added user variables for the static libraries needed for both Release and Debug targets.  All libraries are then rolled up in to a single "PolycodeLibsDebug" and "PolycoreLibsRelease" variable, which the user will need to manually add to their "Linker/Input" properties.  This is the only manual step required on a fresh visual studio project.

* The static library variables are as follows:

  * PolycodeLibs[Debug|Release]: Shortcut to all below libraries
  * PolycodeCoreLibs[Debug|Release]: The polycore library
  * PolycodeDependLibs[Debug|Release]: All dependency libraries (freetype, libpng, etc)
  * PolycodeWinLibs[Debug|Release]: All windows libraries needed by polycode (opengl, glu32, winsock, etc)

* Added "WIN32" and "_WINDOWS" preprocessor definitions to Polycode.props, so that all projects will pass those on.  Now, only "_DEBUG" and "NDEBUG" are left configured in the Debug|Release targets, and I assume the user can safely leave those out?

* Added "Windows" as the default subsystem to use for linking to Polycode.props

* Added the following other misc configs to Polycode.props, not sure if these should be there or if they just happened to be helpful common defaults in the current template solution:

  * Compile/Warning Level: Level3
  * Linker/Generate Debug Info: True

* Set all of the above configuration values to "inherit" in the project solution (as they would be in a vanilla project) and left behind only the existing tweaks unique to Debug|Release targets.

* TODO:

  * Better way to get PolycodeDir?

  * Verify whether or not the new polycode release will push to discrete Debug|Release dirs for the lib and include directories?

  * Custom post-build step to always push pak and dll files to project Debug|Release build dirs?  (This would cut down on forum posts from people who forget to do this, and could be disabled by anyone who wants to do this themselves or use an alternate dll etc)
Add files, images and update html
Updating manifest for go-live.  Adding installer.html so I can install the app :)
corrigindo build
commit error
Adding a quick file to compile files at will
Updating with printout
99 haskell problems first commit
Merge branch 'master' of https://github.com/dasfaha/miscelaneous
Added functionality for poll submit on login to backend
Merge branch 'polls' of github.com:dasfisch/communities into polls
Added "mobile-friendly" changes from the hackathon day.

NOTE: Some of these changes come from Peter. I had to commit them due to the differences in directory structure.
Merge branch 'mobile-theme' into mobile-test

Staging to merge mobile-theme into dryad-master.

Conflicts:
	dspace/modules/xmlui/src/main/webapp/themes/Dryad/Dryad.xsl
Merge pull request #14 from datadryad/mobile-theme

Added "mobile-friendly" changes from the hackathon day.
Merging spospy fix
Rendering using measure representation
New default icons for modules.
Added $.jCore.flashAvailable() which returns the flash version number if
available otherwise 0.
Switched to new flash player Jaris Player http://jarisflvplayer.org
which is a lot better than the old one also supports streaming sources
so its just simply great!
Switched to the new player for the videos and first use flash and then
fall back to html5.
Updated flash player.
Fixed jQuery.jCore.hasFLash as it wasn't working in IE
Better object for videos.
Some new icons for the official modules.
Updated ip2long to work without gmp installed on PHP thanks to Drehcom!
Make possible to check if a module has displayed any content on a page
so you can hide posts in these cases if necessary.
Fixed deactivating template if deleting an other template in the
template manager.
Added reCaptcha support
Increment version number to 1.0
Fixed parsing scripts on ajax requests.
Replaced jQuery with $ for smaller footprint
Added direct browse buttons for members and contact modules.
Rename Keywords to Tags (at least on the frontend)
Changed paginating to show "Page X of X" instead of just "Pages"
Add italic format to finished on download timestamp just like for
started on.
Added paginating option to comments (see Global Settings).
Made preparations for orders chart
1) added the requestAnimationFrame mode with limited FPS 2) put the stats badge to fit nicely on the top right 3) restyled a little bit the menu
Initial commit

Signed-off-by: David Fauth <dsfauth@gmail.com>
Merge branch 'master' of https://github.com/davidfauth/FEC_NEO4J

Conflicts:
	Data/cm12.zip
	Data/cn12.zip
	Data/indiv12.zip

Signed-off-by: David Fauth <dsfauth@gmail.com>
contributing changes 2
Specify 0.6.18 and 0.6.19 releases of node for testing
No dns check.
fixed undef check via typeof
more plotting; I LOVE THESE DATA
zip archiving and loading
Setup keyboard hardware
 - Convert HW_KEYBOARD to variable
 - Scan for keyboard hardware and set variable
Added a name to users.
catch hangup
Now porject contains a very, very simple Makefile to build the TERMomix
Added panel plot function to viz.py for investigating the result of ica decomposition.
Added example how to invoke panel plot function
Fixing last edits
updated user notice
Updating index.html to match template.
Updated backbone implementation.

Updated backbone to 0.5.3 and jquery to 1.7.1.
Updated application to follow the new tempalte.
Removing tooltip from implementation.

Also removed the destory.png image since it is no longer needed.
Removed bindall usage in favor of passing context to bind.
Updating the credit.
Merge branch 'master' into backbone

Conflicts:
	architecture-examples/backbone/js/app.js
Merge branch 'master' into backbone
Upgraded libs. Resolving other issues.

Bolding items left.
Trim todo input and prevent whitespace only todos.
Change content to title in model.
Double click on item div instead of just title.
Removed unused jslitmus.js.
Implement removal of items when blanked on edit.
Converting from spaces to tabs.
Initial changes to bring application up to spec.
Spine: Fix todos not updating when checked while on a route
Spine: Minor cleanup
Close GH-169: inline makeEditable for PlastronJS.
jQuery: Use templating on the footer too
jQuery: Extract store() method to Utils
Move SammyJS to labs
SammyJS: Fix paths, minify js, correct folder structure.
Minify JS and some cleap
Close GH-170: Changed indentation to spaces and Fixed removeChildren function.
added movie year
fixup1
fixup2
removing idea workspace
removing idea workspace
Use diff3 conflictstyle as default.
moved fix for deleted packages to installer
Copy over HTML5 Reset files
Merge header, footer into PHP
Move former 'assets' folder into _ folder and style.css
remove i18n folder
Fold HeadJS into theme as the plugin is out of date
Make metadata changes
Remove Modernizr from head
Add Ninja Pages code to allow page category styling in CSS
Add front page multipage functionality
Styling changes
Switch from Ninja Pages to Map Categories to Pages for better API
Fix styling on pages that aren't the home page
Parent page template
Rename get_child_pages to list_child_pages
Debug Info section styling, remove unnecessary WP tags from page templates
Change #page-PAGENAME selectors to .page-PAGENAME
Genericized page-parent.php for all pages in sections
Rename page-parent.php to page-section.php
Remove sidebar.php and references to it
Conform blog, archive pages HTML to match expected styling format
Update src/com/blockempire/mattkeating/OnlineStaff/OnlineStaff.java
progressive msg_att results
Update facebook.py

fixed the issue 
https://github.com/pythonforfacebook/facebook-sdk/issues/44

Guessing mime type from file.
First commit Intellij Idea
Fix up some more unit tests
store: pre-create the path /local/domain
benchmark: add a sequential "VM start"; "VM shutdown" benchmark
store: make Store.Path.t abstract

This encapsulates a bunch of ad-hoc string and string list manipulation
files merged
fixing merge
submitting fixed tests
Merge branch 'master' of github.com:dkaufman/feed_engine
Final comma groupings
Merge pull request #78 from mikeclemson/additional-comma-groupings

Final comma groupings
Several more comma groupings
Additional comma grouping for appraise value
Show all affected bits in identify
Increased max starting value for auctions
Merge pull request #89 from mikeclemson/increase-max-auction-bid

Increased max starting value for auctions
Merge pull request #88 from mikeclemson/add-missing-aff-to-identify

Show all affected bits in identify
Merge pull request #87 from mikeclemson/additional-comma-groupings

Additional comma groupings
fix range bug for all modules
Removing continue statements from inside Collection.apply uses.  Fixes #10
Fixing another continue statement missed in refactoring.
Fixing errors caused by changes in DboSource::getLog()
Removing debug level override as its not needed anymore.
Correcting passing of forceEnable setting to the Toolbar helper.  isset() will always return true, as the default is false.
Updating Toolbar to include its own Session component now that controllers don't automatically get one.
Fixing explain links so they work under all prefixes.
fix for Toolbar when using dbconfig using key 'datasource' instead of 'driver'

Signed-off-by: Mark Story <mark@mark-story.com>
Fixing whitespacing.
Fixing issues with history settings and cache config getting created even when history panel is not active.  Also fixing issues where Cache configuration generation would interfere with Sessions being written to the cache. Refs #226
very basic TimedBehavior added, currently just for finds

Signed-off-by: Mark Story <mark@mark-story.com>
added save to TimedBehavior, also some small changes to timed finds

Signed-off-by: Mark Story <mark@mark-story.com>
Fixed fatal error related to changes in component handling in 1.3
Fixing failing tests in sql log generation caused by changes in where & how sql logs are generated.
Updating FireCake test case to account for changes in how the test suite works.
Adding doc blocks and test cases for the TimedBehavior.
Removing chaff from DebugKitDebugger test case.
Adding a class name to DebugKitDebugger::getInstance() call to fix issues which pop up when testing sometimes.  You would get an error that Debugger::__benchmarks is undefined and not an array.
Adding a whitespace shell, I'm tired of hunting it down all the time.  Thanks to jperras for writing the original inspiration shell.
Adding missing translation domain

Signed-off-by: Mark Story <mark@mark-story.com>
don't try to render the debug kit's toolbar for requestAction calls

Signed-off-by: Mark Story <mark@mark-story.com>
Fixing object iteration in IE8.
add index_md
tall in progress...
Merge branch 'master' of https://dollittle@github.com:443/dollittle/Solarsmith.git
Deploy generated files.
updated c+p
adds git alias cr
Update for ACE, support for doc tab, minor fix to sprinkler
Added the HelpPane to the pycard-import script.
Moved all the UI-related code from pycard-import to the ui module.
Updated Cerowrt dedication page
Moved jacoco to pluginManagement
parent view tracking
stupid mistake in register
better state handling, add breadcrumb
properly register subviews to views
fix like button bug
Mudando a ordem dos trabalhos

Mudei errado
fixed error :)
Handle evictions triggered through <eviction> configuration in MemoryUsageInterceptor and CacheMgmtInterceptor by registering listeners.
Ball introduced

A Ball is introduced in the project.
Fix shell incompat issue.
Adding support for multiple file grabbing.
Modifying UI - playing with "grab, cancel, done" buttons in table rows.
Removing unneeded classes.
Fixing label strings.
Updated 2012-08-02-drones.md
Внедрение системы ветвления
добавлена библиотека ViewPagerIndicator
замена вкладок
очередная попытка решить проблемы дизайна
about 2.0
tag
улучшен код получения страниц
m succes
use vertex buffer object to improve performance
Put the order after eager_graph. It's more readable.
Added script for generete index.html for each directory
Generated index.html's
xfs: fix inode lookup race

commit f30d500f809eca67a21704347ab14bb35877b5ee upstream.

When we get concurrent lookups of the same inode that is not in the
per-AG inode cache, there is a race condition that triggers warnings
in unlock_new_inode() indicating that we are initialising an inode
that isn't in a the correct state for a new inode.

When we do an inode lookup via a file handle or a bulkstat, we don't
serialise lookups at a higher level through the dentry cache (i.e.
pathless lookup), and so we can get concurrent lookups of the same
inode.

The race condition is between the insertion of the inode into the
cache in the case of a cache miss and a concurrently lookup:

Thread 1			Thread 2
xfs_iget()
  xfs_iget_cache_miss()
    xfs_iread()
    lock radix tree
    radix_tree_insert()
				rcu_read_lock
				radix_tree_lookup
				lock inode flags
				XFS_INEW not set
				igrab()
				unlock inode flags
				rcu_read_unlock
				use uninitialised inode
				.....
    lock inode flags
    set XFS_INEW
    unlock inode flags
    unlock radix tree
  xfs_setup_inode()
    inode flags = I_NEW
    unlock_new_inode()
      WARNING as inode flags != I_NEW

This can lead to inode corruption, inode list corruption, etc, and
is generally a bad thing to occur.

Fix this by setting XFS_INEW before inserting the inode into the
radix tree. This will ensure any concurrent lookup will find the new
inode with XFS_INEW set and that forces the lookup to wait until the
XFS_INEW flag is removed before allowing the lookup to succeed.

Signed-off-by: Dave Chinner <dchinner@redhat.com>
Reviewed-by: Christoph Hellwig <hch@lst.de>
Signed-off-by: Ben Myers <bpm@sgi.com>
Signed-off-by: Greg Kroah-Hartman <gregkh@linuxfoundation.org>
rose_dev: fix memcpy-bug in rose_set_mac_address

[ Upstream commit 81213b5e8ae68e204aa7a3f83c4f9100405dbff9 ]

If both addresses equal, nothing needs to be done. If the device is down,
then we simply copy the new address to dev->dev_addr. If the device is up,
then we add another loopback device with the new address, and if that does
not fail, we remove the loopback device with the old address. And only
then, we update the dev->dev_addr.

Signed-off-by: Daniel Borkmann <daniel.borkmann@tik.ee.ethz.ch>
Signed-off-by: David S. Miller <davem@davemloft.net>
Signed-off-by: Greg Kroah-Hartman <gregkh@linuxfoundation.org>
module: Remove module size limit

commit f946eeb9313ff1470758e171a60fe7438a2ded3f upstream.

Module size was limited to 64MB, this was legacy limitation due to vmalloc()
which was removed a while ago.

Limiting module size to 64MB is both pointless and affects real world use
cases.

Cc: Tim Abbott <tim.abbott@oracle.com>
Signed-off-by: Sasha Levin <sasha.levin@oracle.com>
Signed-off-by: Rusty Russell <rusty@rustcorp.com.au>
Signed-off-by: Greg Kroah-Hartman <gregkh@linuxfoundation.org>
renamed css and js
Tidied up printing
Full stop
worked on thing
Android login working
Initial commit for repo
keep (require 0) in ac-source-R

git-svn-id: https://svn.r-project.org/ESS/trunk@4901 0bbaf3bd-34e0-0310-bf65-c717079852d4
Version 12.09

git-svn-id: https://svn.r-project.org/ESS/trunk@5169 0bbaf3bd-34e0-0310-bf65-c717079852d4
added html input for new search
add irssi config
more config
more irssi config
godmode and instakill added
Added support for ignoring the rows inside a tbody with the cssInfoBlock class set
Updated gititgnore to match http://stackoverflow.com/questions/3325736/eclipse-android-and-gitignore + mac items
no idea why i need to commit here
hall of fame should be follow a more retro design
export slickgrid functions
Add requirements.txt to django_project template
Move django_project -> django/basic/
mkdjango
Add a blank vimrc.local
Move GUI stuff to gvimrc; fix local vimrc include
Added check for SRU response from escidoc, but it still returns the wrong container when searching for a PID. Also added the MetadataHandler skeleton
Bug 799712-805818-805666-816182 - Polishing Clock App
Bug 819009 - add the icon and other UX fixes for the call forwarding feature. r=kaze
Bug 821221: Add opacity:0.99 to "Deselect all" / "Select all" buttons in SMS edit-conversation view, to hack around bug with button-label not painting.
Bug 820711 - [FTE] Counter of PIN attempts added

dom ids change

a

style typo

typofix
Bug 822963 - A test app for native navigator.id
Bug 821461 - Use inline web activity when saving bookmark
Bug 817660 - Update status bar signal icons for v1, for real r=timdream

Added some tests as well.

This doesn't fix Bug 796528.
Bug 823871 - After landing 821461 new mechanism to know if the bookmark was added or not from wrappers [r=Arthur Chen]
Merge pull request #7128 from crh0716/821461

Bug 821461 - Use inline web activity when saving bookmarks
Bug 817694 - [Dialer UX VD] Call screen. Make buttons in call pad with no rounded corners (r=basiclines).
Bug 822448 - Data connection does not need to be reset when changing preferred network type, r=evelyn
Merge pull request #7137 from fabi1cazenave/no-network-restart

Bug 822448 - Data connection does not need to be reset when changing preferred network type, r=evelyn
Bug 813193 - [Dialer UX VD] In the keypad and general dialer structure, sizes are wrong (r=basiclines).
Bug 823524 - Missing l10n entities in the Cost Control app, r=stas
Merge pull request #7138 from fabi1cazenave/l10n-costcontrol

Bug 823524 - Missing l10n entities in the Cost Control app, r=stas
Bug 823534 - Missing l10n entity in the Contacts app, r=stas
Merge pull request #7139 from fabi1cazenave/l10n-contacts

Bug 823534 - Missing l10n entity in the Contacts app, r=stas
Bug 823889 - The footer of the wrapper is over bookmarking inline activity of the homescreen [vingtetun]
Bug 819207 - Carrier name in Settings should follow SIM display conditions

- Factorise operator display rules
- Add tests
Merge pull request #7114 from Rik/carrier-name-819207

Bug 819207 - Carrier name in Settings should follow SIM display conditions, r=kaze
Merge branch 'master' into morePerm
Merge branch 'master' into morePerm
Merge branch 'master' into morePerm
Italian translation updated
Merge branch 'master' into morePerm
permission changes
remove bluetooth whitelist
quick hack to allow selection of REPORTER via env variable for integration tests
update readme
make REPORTER as an env variable work
fix: contacts / pick number | #3602
init the Bluetooth adapter only until we have enabled it
fix: contacts / pick number / avoid retunrs | #3603
Un-OOP-blacklist some apps that now work and clean up the blacklist itself.
Fixed touchable area of checkbox
fix: contacts / pick number / apply suggestions
Update apps/email/locales/email.pt-BR.properties
Remove shadow from browser url input (fixes #3652)
Merge pull request #3653 from daleharvey/browser-fixes

Remove shadow from browser url input (fixes #3652)
Merge pull request #3547 from ltedone/new2-italian-translation

Italian translation (it) updated
ZynAddSubFX: jack/lash/portaudio support
Ensure fortified letters do not conribute to stolenScore
Merge pull request #1 from elucid/no-steal-fortified

Ensure fortified letters do not conribute to stolenScore
PLF-2743 : My Spaces menu should not display entries for void navigation nodes
fix import logic
bundle upgrades
- Added FollowSymlinks options. Needed for Apache
Site updated at 2012-12-25 15:11:53 UTC
Improve Arcanist event doucmentation

Summary:
  - Soft dependencies on D3423, D3422, D3421.
  - Document the availability of 'workflow' on all events.
  - Improve instructions on building, configuring and debugging event handlers.

Test Plan: Read documentation.

Reviewers: vrana, nh

Reviewed By: vrana

CC: aran

Differential Revision: https://secure.phabricator.com/D3424
Jump to correct line in Blame previous revision

Test Plan: Jumped on correct line in SVN, Git and HG repos.

Reviewers: epriestley

Reviewed By: epriestley

CC: aran, Korvin

Differential Revision: https://secure.phabricator.com/D3084
Prevent notice for missing configuration in PhabricatorIRCDifferentialNotificationHandler

Summary: Provide array() default so we don't foreach() over null in the case of a missing config (from @dctrwatson).

Test Plan: Will verify with @dctrwatson.

Reviewers: vrana, btrahan, dctrwatson

Reviewed By: vrana

CC: aran

Differential Revision: https://secure.phabricator.com/D3686
replace hogan with handlebars
fixed update_all_hosts()
Changed namespace. Various fixes and improvements.
Fixed buggy strncmp and restored command support to chat
Removed extra blank lines
Adding top functionnality
added default home controller and basic view (just resumelink logo header)
moving harness
Added run before up folder
inital commit with general files
Merge branch 'master' of https://github.com/flatbmx/AncientForge
Add scroll bounds change handling logic
Add support for SPDY
history weiter
-Tests und Services wegen Student-Attribut in Prüfungsleistung angepasst
Se mejoro el proceso de Login
get logger name by "mddoc.%s" %  __name__
Commit right after the file processing is finished.
Merge pull request #1 from xificurk/next_release

Commit right after the file processing is finished.
Animation du personnage amélioré + menu + souris + graphisme
Removed import of datetime module
Item11808: perltidy them all, so people are not accidentally impacted by the new enforced rule -- Sorry Micha, could not find a way to define specific values within the file

git-svn-id: http://svn.foswiki.org/trunk/SkillsPlugin@14686 0b4bb1d4-4e5a-0410-9cc4-b2b747904278
test %g
should be final updates to chat UI and server for now
removing user uploaded images until we get S3 sorted out after Natgat
Both linux ath9k and the reference driver initialises the PLL here
during chip wakeup.

Obtained from:	Linux ath9k, Atheros


git-svn-id: svn+ssh://svn.freebsd.org/base/head@234269 ccf9f872-aa2e-dd11-9fc8-001c23d0bc1f
Bump date missed in r202756

PR:		docs/171624
Submitted by:	bdrewery
Approved by:	gabor
MFC after:	3 days


git-svn-id: svn+ssh://svn.freebsd.org/base/head@240506 ccf9f872-aa2e-dd11-9fc8-001c23d0bc1f
In ipfw(8), make the text about dynamic rules consistent.

PR:		docs/120539
Approved by:	gabor (mentor)
MFC after:	5 days


git-svn-id: svn+ssh://svn.freebsd.org/base/head@238540 ccf9f872-aa2e-dd11-9fc8-001c23d0bc1f
- Fix resumectx() prototypes to reflect reality.
- For i386, simply jump to resumectx() with PCB in %ecx.
- Fix a style(9) nit while I am here.


git-svn-id: svn+ssh://svn.freebsd.org/base/head@237027 ccf9f872-aa2e-dd11-9fc8-001c23d0bc1f
Only output a list of file systems that need to be dumped if the system
has a non-empty dumpdates file.

Reviewed by:	brooks
MFC after:	1 week


git-svn-id: svn+ssh://svn.freebsd.org/base/head@237337 ccf9f872-aa2e-dd11-9fc8-001c23d0bc1f
Addendum to r238604.  If the inactive queue scan isn't restarted, then
the variable "addl_page_shortage_init" isn't needed.

X-MFC after:	r238604


git-svn-id: svn+ssh://svn.freebsd.org/base/head@238732 ccf9f872-aa2e-dd11-9fc8-001c23d0bc1f
Make default ABI for as(1) to be the same as target platform.
This change makes object files compiled with default flags by
gcc and as compatible.


git-svn-id: svn+ssh://svn.freebsd.org/base/head@233388 ccf9f872-aa2e-dd11-9fc8-001c23d0bc1f
Remove route caching from IP multicast routing code. There is no
reason to do that, and also, cached route never got unreferenced,
which meant a reference leak.

Reviewed by:	bms


git-svn-id: svn+ssh://svn.freebsd.org/base/head@238016 ccf9f872-aa2e-dd11-9fc8-001c23d0bc1f
Fix several reference counting and object lifetime issues between
the pass(4) and enc(4) drivers and devfs.

The pass(4) driver uses the destroy_dev_sched() routine to
schedule its device node for destruction in a separate thread
context.  It does this because the passcleanup() routine can get
called indirectly from the passclose() routine, and that would
cause a deadlock if the close routine tried to destroy its own
device node.

In any case, once a particular passthrough driver number, e.g.
pass3, is destroyed, CAM considers that unit number (3 in this
case) available for reuse.

The problem is that devfs may not be done cleaning up the previous
instance of pass3, and will panic if isn't done cleaning up the
previous instance.

The solution is to get a callback from devfs when the device node
is removed, and make sure we hold a reference to the peripheral
until that happens.

Testing exposed some other cases where we have reference counting
issues, and those were also fixed in the pass(4) driver.

cam_periph.c:	In camperiphfree(), reorder some of the operations.

		The peripheral destructor needs to be called before
		the peripheral is removed from the peripheral is
		removed from the list.  This is because once we
		remove the peripheral from the list, and drop the
		topology lock, the peripheral number may be reused.
		But if the destructor hasn't been called yet, there
		may still be resources hanging around (like devfs
		nodes) that haven't been fully cleaned up.

cam_xpt.c:	Add an argument to xpt_remove_periph() to indicate
		whether the topology lock is already held.

scsi_enc.c:	Acquire an extra reference to the peripheral during
		registration, and release it once we get a callback
		from devfs indicating that the device node is gone.

		Call destroy_dev_sched_cb() in enc_oninvalidate()
		instead of calling destroy_dev() in the cleanup
		routine.

scsi_pass.c:	Add reference counting to handle peripheral and
		devfs object lifetime issues.

		Add a reference to the peripheral and the devfs
		node in the peripheral registration.

		Don't attempt to add a physical path alias if the
		peripheral has been marked invalid.

		Release the devfs reference once the initial
		physical path alias taskqueue run has completed.

		Schedule devfs node destruction in the
		passoninvalidate(), and release our peripheral
		reference in a new routine, passdevgonecb() once
		the devfs node is gone.  This allows the peripheral
		to fully go away, and the peripheral destructor,
		passcleanup(), will get called.

MFC after:	3 days
Sponsored by:	Spectra Logic


git-svn-id: svn+ssh://svn.freebsd.org/base/head@237328 ccf9f872-aa2e-dd11-9fc8-001c23d0bc1f
Improve support for USB packet filtering also when reading dumps, and
allow filtered data to be dumped to a binary file.

MFC after:	1 week


git-svn-id: svn+ssh://svn.freebsd.org/base/head@234636 ccf9f872-aa2e-dd11-9fc8-001c23d0bc1f