BUG: Fix all the leaks in MicrogliaRegionTracer

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4376 9053f808-4e3f-0410-9672-ef3bfcbbeb84
ENH : Updated the code to display the image in nrrd format.

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4377 9053f808-4e3f-0410-9672-ef3bfcbbeb84
BUG: Forgot to reenable tree smoothing in the previous commit

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4378 9053f808-4e3f-0410-9672-ef3bfcbbeb84
Soma Segmentation for time lapse microglia stacks, using selected LoG points as initial seeds

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4379 9053f808-4e3f-0410-9672-ef3bfcbbeb84
COMP: Remove incorrect specification to link to TraceCoreLibrary in NuclearSegmentation/exe/CMakeList.txt

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4380 9053f808-4e3f-0410-9672-ef3bfcbbeb84
BUG:Add Trace File Name to the L-measure Table instead of the default one in TraceObject

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4381 9053f808-4e3f-0410-9672-ef3bfcbbeb84
BUG: Fix the naming on the critical point image and iterators and use the correct radius in the neighborhood iterator

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4382 9053f808-4e3f-0410-9672-ef3bfcbbeb84
ENH: search subsets of features module in SPD; Redesign the tree construction considering subgraphs. And Rerun failure bug fixed.

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4383 9053f808-4e3f-0410-9672-ef3bfcbbeb84
PERF: Use more sane defaults for non-maximal suppression radius to lessen the number of critical points

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4384 9053f808-4e3f-0410-9672-ef3bfcbbeb84
BUG: Fix a bug relating to reading the file in MicrogliaRegionTracer

The while loop should not be checking EOF, since the file may have other bad bits.

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4385 9053f808-4e3f-0410-9672-ef3bfcbbeb84
BUG: Really fix the problem with ifstream in MicrogliaRegionTracer

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4386 9053f808-4e3f-0410-9672-ef3bfcbbeb84
BUGFIX: project file - include soma files, somabar

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4387 9053f808-4e3f-0410-9672-ef3bfcbbeb84
BUG: Fix crash bug in the last iteration of reading the seedpoint file in MicrogliaRegionTracer

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4388 9053f808-4e3f-0410-9672-ef3bfcbbeb84
ENH: Image normalization by dividing the background image in SomaExtraction 

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4389 9053f808-4e3f-0410-9672-ef3bfcbbeb84
BUGFIX: condition check for project file table in raycast/projection mode

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4390 9053f808-4e3f-0410-9672-ef3bfcbbeb84
BUGFIX: display of soma files when project loaded

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4391 9053f808-4e3f-0410-9672-ef3bfcbbeb84
Stable SPD with much cleaner interface, default params set.

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4392 9053f808-4e3f-0410-9672-ef3bfcbbeb84
code merge for Traceditor


git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4393 9053f808-4e3f-0410-9672-ef3bfcbbeb84
BUG: Fix lost connection signal to invoke graph window.

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4394 9053f808-4e3f-0410-9672-ef3bfcbbeb84
nuclear surface feature fix

git-svn-id: https://farsight-svn.ee.uh.edu/repos/farsight/trunk@4395 9053f808-4e3f-0410-9672-ef3bfcbbeb84