COMP: Remove unused file "PlastimatchDVH.s4ext-disabled"

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21344 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: reduce warning messages when loading brain atlas and restoring scenes.

Only call update scene on nodes that are in the scene view.
Use DisableModifiedEventOn instead of Start/EndModify when processing scene view child
nodes since the scene view scene is not in importing state and this reduces
responses to modified events.
Added error checking and tweaked messages when reading model files.

Issue #2513


git-svn-id: http://svn.slicer.org/Slicer4/trunk@21345 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: New brain atlas mrb (uploaded to Nightly dir), cleaned up storage nodes.
STYLE: give feedback about how many model hierarchies and scene views there are to test.

Still to do: clean up the mrml file of extraneous view and camera nodes.

Issue #2513



git-svn-id: http://svn.slicer.org/Slicer4/trunk@21346 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: Bump ITKv3 version.

Get fixes to the SpatialObject vessel .tre file reader from hackathon
with Jean-Christophe Fillion-Robin.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21347 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: show self test buttons in alphabetical order

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21348 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: add reloadable self test for DataProbe module

Note: not yet fully implemented.  Requires additional refactoring
of gui into logic, and reloadable code should replace widget in
main gui (not just module gui).

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21349 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: use updated name for download of brain atlas

fix for failing tests related to brain atlas in bug #2513

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21350 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: speed up atlas tests by minimizing delay while printing status

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21351 3bd1e089-480b-0410-8dfb-8563597acbee
ENH; Update ITKv4, SimpleITK, BRAINSTools

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21352 3bd1e089-480b-0410-8dfb-8563597acbee
STYLE: remove unused script (performance test cleanup)

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21353 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: issue #2513 avoid a crash when restoring scene view

This change probably speeds things up to - the issue is that without
this change items in the model are being updated while the scene
is in an inconsistent state.  From testing by me and Nicole we saw
no side effects of this call and it allows the brain atlas to
run to completion, although it still crashes when closing the scene
(in a SceneView destructor) which means I believe it is now
the same as issue #2512.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21354 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: Clean up implementation of RSNA2012ProstateDemo

Make this a proper self test module for easier testing.

Work on progress for a fix to #2512

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21361 3bd1e089-480b-0410-8dfb-8563597acbee
STYLE: avoid using Error macro on when behavior is not unexpected

Since the null node message can be triggered during a scene load
or scene view change, don't print messages to the error log unless
specifically placed in debug mode.

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21362 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: clean up the prostate demo test to make it faster and more verbose

To help with debugging the crash on exit issue #2512

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21363 3bd1e089-480b-0410-8dfb-8563597acbee
ENH: for easier testing, avoid re-download of prostate mrb

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21364 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: Add editor icons removed by error

This is a follow up of commit r21328 associated with issue #2735

See http://na-mic.org/Mantis/view.php?id=2757
Fixes #2757

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21365 3bd1e089-480b-0410-8dfb-8563597acbee
STYLE: Provide more output to the user when missing parameter values issue #2517

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21406 3bd1e089-480b-0410-8dfb-8563597acbee
COMP: Remove SWidget tcl related code

Keep the Slicer3Adapter.tcl around since it's still required by EMSegment

Later on should also remove the slicer.sliceWidet* object since these
ones can be accessed using the slicer.app.layoutManager() object.

See http://na-mic.org/Mantis/view.php?id=2735
Fixes #2735

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21407 3bd1e089-480b-0410-8dfb-8563597acbee
BUG: Remove extra initialization associated with "pkgIndex.tcl"

Since the file "pkgIndex.tcl" has been removed with r21407, it shouldn't
be imported.


See http://www.na-mic.org/Bug/view.php?id=2735
Fixes #2735

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21410 3bd1e089-480b-0410-8dfb-8563597acbee
BUG 1536. Request renderer even if it's in the scene batch process

git-svn-id: http://svn.slicer.org/Slicer4/trunk@21412 3bd1e089-480b-0410-8dfb-8563597acbee