Origin of birds

The origin of birds is one of the most interesting questions in palaeontology and evolution. Birds evolved from theropod dinosaurs during the Mesozoic era.
Thomas Henry Huxley ("Darwin's bulldog"), who was a comparative anatomist, made a study of this nearly 150 years ago. He compared the first fossil bird, Archaeopteryx, with a small theropod dinosaur, Compsognathus. They are two fossils from the same place and time: the Solnhofen limestone in Bavaria, Germany. The strata come from the end of the Jurassic period, about 144 million years ago.
Huxley's papers on Archaeopteryx, and the origin of birds, were of great interest then, and still are. He showed that the two fossils were almost identical, except for the front limbs and feathers of Archaeopteryx.
He united reptiles and birds under the title of Sauropsida, and thought that birds had evolved from small carnivorous dinosaurs.
Modern ideas
All palaeontologists since Huxley agreed that Archaeopteryx evolved from reptiles, but many thought it was derived from an earlier type than dinosaurs. It took a long time before they agreed with Huxley. Almost all now think that early members of a group of small carnivorous dinosaur were ancestral to birds.
The group most favoured as ancestral is the Paraves or Eumaniraptora, which includes the dromaeosaurs and the troodonts. The dromaeosaurs include Velociraptor and Deinonychus but, of course, it would have been an earlier type of dromaeosaur, perhaps from the lower Jurassic. Dromaeosaurs have several traits we used to think were special to birds: hollow bones with holes for air-sacs, limbs with many bones either lost or fused, clavicles fused into wishbones, and feathers.
The discovery of feathered dinosaurs and birds in the Lower Cretaceous of China was what finally convinced palaeontologists. What seems to have happened is this. Theropod dinosaurs evolved feathers for heat regulation rather than flight. From then, a small group began to use them for primitive flight. This group is represented in the Jurassic by Archaeopteryx and Anchiornis.
Mosaic of old and new
Huxley had pointed out that Archaeopteryx was a mixture of reptile and bird features. Without the feathers and arms, its skeleton looked just like that of Compsognathus. We now know its bone growth physiology was much slower than modern birds, and more like that of its dinosaur ancestors. This means it would take longer after hatching before it could fly. A modern precocial bird takes for 3-6 weeks from hatching to flying. In Archaeopteryx this milestone might have taken about 18 weeks. It might have taken two to three years to reach its final adult size. The evolution of the physiology of modern forms occurred later in the group's history. They have had over 140 million years to evolve after Archaeopteryx. This is an example of mosaic evolution, where some characters in a transitional form are basal, while others are remarkably advanced.
Chinese bird fossils
Jurassic fossils
Anchiornis huxlei is so far the only dinobird fossil known which lived before Archaeopteryx. It was found in Liaoning, China. The strata dates to the mid-late Jurassic period, 160 to 155 million years ago. There are also feather-bearing non-flying dinosaurs from the Jurassic of China, such as the maniraptoran Epidexipteryx. Epidexipteryx is the earliest known example of ornamental feathers in the fossil record, about 152 to 168 million years ago.
Anchiornis had large wings, made up of flight feathers attached to the arm and hand (as in modern birds) as well as flight feathers on the hind legs, forming an arrangement of fore and hind wings. The forewing of Anchiornis was composed of 11 primary feathers and 10 secondary feathers. The primary feathers in Anchiornis indicated poorer aerodynamic ability compared to its later relatives. In Microraptor and Archaeopteryx, the longest forewing feathers were closest to the tip of the wing, making the wings appear long, narrow, and pointed. However, in Anchiornis, the longest wing feathers anchored near the wrist, making the wing broadest in the middle and tapering near the tip for a more rounded, less flight-adapted profile.
So the animal could glide, but probably not fly.
Cretaceous fossils
Flying gave the birds access to many new habitats, and an adaptive radiation took place. We see the results of this rapid evolution in the Chinese fossils from the Lower Cretaceous, which are more varied, and mostly more advanced, than Archaeopteryx. There are now 31 different bird genera from the Lower Cretaceous of China. It is also clear, from the tail feathers of Confuciusornis (one of the Chinese fossils), that some of these birds were already using feathers for signalling and display, just as they do today. Like heat regulation, using feathers for display may be much earlier than flight. Confuciusornis is the fifth oldest bird fossil, about 25 million years after Archaeopteryx.
Most dinosaurs died out in the K/T extinction event, at the end of the Cretaceous. The only ones that survived were the birds. The birds, therefore, are not just the descendents of reptiles, but the descendents of theropod dinosaurs. Birds are the last surviving dinosaurs.
Colour of feathers
The pigments preserved in a 120 million year old fossil bird have been revealed using X-rays. A team scanned the beautifully preserved fossils of Gansus yumenensis and Confuciusornis sanctus. Their study, published in the journal Science, revealed the chemical fingerprint of pigments that once tinted the ancient bird's feathers. The trace metal copper is a marker for the dark pigment eumelanin. "The X-ray technique was so sensitive that it was able to show that each molecule of copper it detected was being tugged and squashed into a particular shape because it was bound within a eumelanin molecule".
Research of this kind has now been repeated several times.
Dinobirds
This is an informal grouping of theropods closest related to birds. These groups are small dinosaurs. They definitely have pennaceous feathers (like birds), and therefore probably temperature regulation. One proposed classification is:
Eumaniraptora or Paraves
Deinonychosauria
Troodontidae
Dromaeosauridae
Aves
The earliest example of a dinobird is a troodont, Anchiornis huxlei, from the Upper Jurassic. This specimen pre-dates Archaeopteryx by 5-10 million years, and predates any other feathered dinosaur from its location (Liaoning Province, China) by 25-35 million years. This species had long feathers on its hind limbs as well as fore limbs, and could glide, but probably not fly.
At least this clade of theropods had well-developed genuine feathers before the first known bird. Feathering in other groups of theropods is still uncertain. One compsognathid, Sinosauropteryx, has plumaceous feathers, as does Shuvuuia, another small theropod. Apparently, many small theropods carried feathers, whose function was thermoregulation (to keep warm).
Extinction event
There is now evidence that many early bird groups went extinct at the end of the Cretaceous period (K/T extinction event). This is the same time that the other dinosaurs went extinct.
"Analysing 24 specimens, the researchers identified 17 species, seven of which were 'archaic birds' that are not seen after the K-T mass extinction. These findings show for the first time a diversity of archaic birds alive, right up until the end of the Cretaceous. This would mean that the archaic birds went extinct abruptly 65 million years ago, and that modern birds must have descended from just a few groups that survived the event".
Researchers dated the fossils to within 300,000 years of the boundary layer at the end of the Cretaceous.
A May 2018 report, in Current Biology, says that its authors think that the birds that survived the end-of-Cretaceous disaster were Neornithes, Neognathae (Galloanserae + Neoaves). They were not tree-living, and could not fly far. After the world-wide destruction of forests, it took a long time for the world's forests to return properly. Virtually the same conclusions were already reached before, in a 2017 book on avian evolution.
Origin of modern birds
All living birds are Neornithes, a subclass in traditional taxonomy. The Ornithurae is the natural group made up of modern birds and their extinct relatives. Their relatives include Ichthyornis and Hesperornis, and some of the Chinese Cretaceous birds. They all have a plough-shaped pygostyle, a bone at the end of the tail which allows the tail feathers to fan and retract. Other groups of birds became extinct in the K/T extinction event.
Gansus is a genus of aquatic birds that lived during the Lower Cretaceous, somewhere between 115 and 105 million years ago in what is now Gansu province, western China. It may be the oldest-known of the Ornithurae, depending how that group is defined.
Under any definition, all living birds, including taxa as diverse as ostriches, hummingbirds and eagles, are descended from basal ornithurans, many of which were semi-aquatic. It is now thought possible that all modern birds descended specifically from a semi-aquatic bird similar to Gansus. Thus, while Gansus is not necessarily a direct ancestor of today's birds, it is closely related to such an ancestral species.