Task: Chaocipher
C#: using System;

namespace Chaocipher {
    enum Mode {
        ENCRYPT,
        DECRYPT,
    }

    class Program {
        const string L_ALPHABET = "HXUCZVAMDSLKPEFJRIGTWOBNYQ";
        const string R_ALPHABET = "PTLNBQDEOYSFAVZKGJRIHWXUMC";

        static string Exec(string text, Mode mode, bool showSteps = false) {
            char[] left = L_ALPHABET.ToCharArray();
            char[] right = R_ALPHABET.ToCharArray();
            char[] eText = new char[text.Length];
            char[] temp = new char[26];

            for (int i = 0; i < text.Length; ++i) {
                if (showSteps) Console.WriteLine("{0} {1}", string.Join("", left), string.Join("", right));
                int index = 0;
                if (mode == Mode.ENCRYPT) {
                    index = Array.IndexOf(right, text[i]);
                    eText[i] = left[index];
                } else {
                    index = Array.IndexOf(left, text[i]);
                    eText[i] = right[index];
                }
                if (i == text.Length - 1) break;

                

                for (int j = index; j < 26; ++j) temp[j - index] = left[j];
                for (int j = 0; j < index; ++j) temp[26 - index + j] = left[j];
                var store = temp[1];
                for (int j = 2; j < 14; ++j) temp[j - 1] = temp[j];
                temp[13] = store;
                temp.CopyTo(left, 0);

                

                for (int j = index; j < 26; ++j) temp[j - index] = right[j];
                for (int j = 0; j < index; ++j) temp[26 - index + j] = right[j];
                store = temp[0];
                for (int j = 1; j < 26; ++j) temp[j - 1] = temp[j];
                temp[25] = store;
                store = temp[2];
                for (int j = 3; j < 14; ++j) temp[j - 1] = temp[j];
                temp[13] = store;
                temp.CopyTo(right, 0);
            }

            return new string(eText);
        }

        static void Main(string[] args) {
            var plainText = "WELLDONEISBETTERTHANWELLSAID";
            Console.WriteLine("The original plaintext is : {0}", plainText);
            Console.WriteLine("\nThe left and right alphabets after each permutation during encryption are :\n");
            var cipherText = Exec(plainText, Mode.ENCRYPT, true);
            Console.WriteLine("\nThe ciphertext is : {0}", cipherText);
            var plainText2 = Exec(cipherText, Mode.DECRYPT);
            Console.WriteLine("\nThe recovered plaintext is : {0}", plainText2);
        }
    }
}

Java: import java.util.Arrays;

public class Chaocipher {
    private enum Mode {
        ENCRYPT,
        DECRYPT
    }

    private static final String L_ALPHABET = "HXUCZVAMDSLKPEFJRIGTWOBNYQ";
    private static final String R_ALPHABET = "PTLNBQDEOYSFAVZKGJRIHWXUMC";

    private static int indexOf(char[] a, char c) {
        for (int i = 0; i < a.length; ++i) {
            if (a[i] == c) {
                return i;
            }
        }
        return -1;
    }

    private static String exec(String text, Mode mode) {
        return exec(text, mode, false);
    }

    private static String exec(String text, Mode mode, Boolean showSteps) {
        char[] left = L_ALPHABET.toCharArray();
        char[] right = R_ALPHABET.toCharArray();
        char[] eText = new char[text.length()];
        char[] temp = new char[26];

        for (int i = 0; i < text.length(); ++i) {
            if (showSteps) {
                System.out.printf("%s  %s\n", new String(left), new String(right));
            }
            int index;
            if (mode == Mode.ENCRYPT) {
                index = indexOf(right, text.charAt(i));
                eText[i] = left[index];
            } else {
                index = indexOf(left, text.charAt(i));
                eText[i] = right[index];
            }
            if (i == text.length() - 1) {
                break;
            }

            

            if (26 - index >= 0) System.arraycopy(left, index, temp, 0, 26 - index);
            System.arraycopy(left, 0, temp, 26 - index, index);
            char store = temp[1];
            System.arraycopy(temp, 2, temp, 1, 12);
            temp[13] = store;
            left = Arrays.copyOf(temp, temp.length);

            

            if (26 - index >= 0) System.arraycopy(right, index, temp, 0, 26 - index);
            System.arraycopy(right, 0, temp, 26 - index, index);
            store = temp[0];
            System.arraycopy(temp, 1, temp, 0, 25);
            temp[25] = store;
            store = temp[2];
            System.arraycopy(temp, 3, temp, 2, 11);
            temp[13] = store;
            right = Arrays.copyOf(temp, temp.length);
        }

        return new String(eText);
    }

    public static void main(String[] args) {
        String plainText = "WELLDONEISBETTERTHANWELLSAID";
        System.out.printf("The original plaintext is : %s\n", plainText);
        System.out.println("\nThe left and right alphabets after each permutation during encryption are:");
        String cipherText = exec(plainText, Mode.ENCRYPT, true);
        System.out.printf("\nThe cipher text is : %s\n", cipherText);
        String plainText2 = exec(cipherText, Mode.DECRYPT);
        System.out.printf("\nThe recovered plaintext is : %s\n", plainText2);
    }
}