Kaggle competition: Global Wheat Detection
<SOS> metric: custom metric Kaggle data source: global-wheat-detection<set_options>
!pip install --no-deps '.. /input/timm-package/timm-0.1.26-py3-none-any.whl' > /dev/null
!pip install --no-deps '.. /input/pycocotools/pycocotools-2.0-cp37-cp37m-linux_x86_64.whl' > /dev/null
device = "cuda:0" if torch.cuda.is_available() else 'cpu'<load_pretrained>
def get_valid_transforms() :
return A.Compose([
A.Resize(height=512, width=512, p=1.0),
ToTensorV2(p=1.0),
], p=1.0 )
os.makedirs('.. /data', exist_ok=True)
 base_dir = '.. /input/dogs-vs-cats-redux-kernels-edition'
train_dir = '.. /data/train'
test_dir = '.. /data/test'
train_zip = zp.ZipFile(os.path.join(base_dir, 'train.zip'))
train_zip.extractall('.. /data')
 test_zip = zp.ZipFile(os.path.join(base_dir, 'test.zip'))
test_zip.extractall('.. /data' )<define_variables>
DATA_ROOT_PATH = '.. /input/global-wheat-detection/test'
class DatasetRetriever(Dataset):
def __init__(self, image_ids, transforms=None):
super().__init__()
self.image_ids = image_ids
self.transforms = transforms
def __getitem__(self, index: int):
image_id = self.image_ids[index]
image = cv2.imread(f'{DATA_ROOT_PATH}/{image_id}.jpg', cv2.IMREAD_COLOR)
 image = cv2.cvtColor(image, cv2.COLOR_BGR2RGB ).astype(np.float32)
 image /= 255.0
if self.transforms:
sample = {'image': image}
sample = self.transforms(**sample)
 image = sample['image']
return image, image_id
def __len__(self)-> int:
return self.image_ids.shape[0]
train_list = glob.glob(os.path.join(train_dir, '*.jpg'))
test_list = glob.glob(os.path.join(test_dir, '*.jpg'))
print(train_list[:5] )<split>
dataset = DatasetRetriever(
 image_ids=np.array([path.split('/')[-1][:-4] for path in glob(f'{DATA_ROOT_PATH}/*.jpg')]),
transforms=get_valid_transforms() 
)
 def collate_fn(batch):
return tuple(zip(*batch))
data_loader = DataLoader(
 dataset,
batch_size=2,
shuffle=False,
num_workers=4,
drop_last=False,
collate_fn=collate_fn
)
train_list, val_list = train_test_split(train_list, test_size=0.2 )<define_search_space>
def load_net(checkpoint_path):
config = get_efficientdet_config('tf_efficientdet_d5')
 net = EfficientDet(config, pretrained_backbone=False)
 config.num_classes = 1
config.image_size=512
net.class_net = HeadNet(config, num_outputs=config.num_classes, norm_kwargs=dict(eps=.001, momentum=.01))
checkpoint = torch.load(checkpoint_path)
 net.load_state_dict(checkpoint['model_state_dict'])
 del checkpoint
gc.collect()
net = DetBenchEval(net, config)
 net.eval() ;
return net.cuda()
net = load_net('.. /input/effdetd5/best-checkpoint-027epoch.bin' )
size = 224
mean =(0.485, 0.456, 0.406)
 std =(0.229, 0.224, 0.225 )<normalization>
class BaseWheatTTA:

 image_size = 512
def augment(self, image):
raise NotImplementedError
def batch_augment(self, images):
raise NotImplementedError
def deaugment_boxes(self, boxes):
raise NotImplementedError
class TTAHorizontalFlip(BaseWheatTTA):

 def augment(self, image):
return image.flip(1)
 def batch_augment(self, images):
return images.flip(2)
 def deaugment_boxes(self, boxes):
boxes[:, [1,3]] = self.image_size - boxes[:, [3,1]]
return boxes
class TTAVerticalFlip(BaseWheatTTA):

 def augment(self, image):
return image.flip(2)
 def batch_augment(self, images):
return images.flip(3)
 def deaugment_boxes(self, boxes):
boxes[:, [0,2]] = self.image_size - boxes[:, [2,0]]
return boxes
class TTARotate90(BaseWheatTTA):

 def augment(self, image):
return torch.rot90(image, 1,(1, 2))
def batch_augment(self, images):
return torch.rot90(images, 1,(2, 3))
def deaugment_boxes(self, boxes):
res_boxes = boxes.copy()
res_boxes[:, [0,2]] = self.image_size - boxes[:, [1,3]]
res_boxes[:, [1,3]] = boxes[:, [2,0]]
return res_boxes
class TTACompose(BaseWheatTTA):

 def __init__(self, transforms):
self.transforms = transforms
def augment(self, image):
for transform in self.transforms:
image = transform.augment(image)
 return image
def batch_augment(self, images):
for transform in self.transforms:
images = transform.batch_augment(images)
 return images
def prepare_boxes(self, boxes):
result_boxes = boxes.copy()
result_boxes[:,0] = np.min(boxes[:, [0,2]], axis=1)
 result_boxes[:,2] = np.max(boxes[:, [0,2]], axis=1)
 result_boxes[:,1] = np.min(boxes[:, [1,3]], axis=1)
 result_boxes[:,3] = np.max(boxes[:, [1,3]], axis=1)
 return result_boxes
def deaugment_boxes(self, boxes):
for transform in self.transforms[::-1]:
boxes = transform.deaugment_boxes(boxes)
 return self.prepare_boxes(boxes )
class ImageTransform() :
def __init__(self, resize, mean, std):
self.data_transform = {
'train': transforms.Compose([
transforms.RandomResizedCrop(resize, scale=(0.5, 1.0)) ,
transforms.RandomHorizontalFlip() ,
transforms.ToTensor() ,
transforms.Normalize(mean, std)
 ]),
'val': transforms.Compose([
transforms.Resize(256),
transforms.CenterCrop(resize),
transforms.ToTensor() ,
transforms.Normalize(mean, std)
 ])
 }
def __call__(self, img, phase):
return self.data_transform[phase](img )<categorify>
tta_transforms = []
for tta_combination in product([TTAHorizontalFlip() , None],
[TTAVerticalFlip() , None],
[TTARotate90() , None]):
tta_transforms.append(TTACompose([tta_transform for tta_transform in tta_combination if tta_transform]))
class ImageDataset(torch.utils.data.Dataset):
def __init__(self, file_list, transform=None, phase='train'):
self.file_list = file_list
self.transform = transform
self.phase = phase
def __len__(self):
self.filelength = len(self.file_list)
 return self.filelength
def __getitem__(self, idx):
img_path = self.file_list[idx]
img = Image.open(img_path)
 img_transformed = self.transform(img, self.phase)
 label = img_path.split('/')[-1].split('.')[0]
if label == 'dog':
label = 1
elif label == 'cat':
label = 0
return img_transformed, label<define_variables>
def make_tta_predictions(images, score_threshold=0.25):
with torch.no_grad() :
images = torch.stack(images ).float().cuda()
predictions = []
for tta_transform in tta_transforms:
result = []
det = net(tta_transform.batch_augment(images.clone()), torch.tensor([1]*images.shape[0] ).float().cuda())
 for i in range(images.shape[0]):
boxes = det[i].detach().cpu().numpy() [:,:4]
scores = det[i].detach().cpu().numpy() [:,4]
indexes = np.where(scores > score_threshold)[0]
boxes = boxes[indexes]
boxes[:, 2] = boxes[:, 2] + boxes[:, 0]
boxes[:, 3] = boxes[:, 3] + boxes[:, 1]
boxes = tta_transform.deaugment_boxes(boxes.copy())
 result.append({
'boxes': boxes,
'scores': scores[indexes],
})
 predictions.append(result)
 return predictions
def run_wbf(predictions, image_index, image_size=512, iou_thr=0.44, skip_box_thr=0.43, weights=None):
boxes = [(prediction[image_index]['boxes']/(image_size-1)).tolist() for prediction in predictions]
scores = [prediction[image_index]['scores'].tolist() for prediction in predictions]
labels = [np.ones(prediction[image_index]['scores'].shape[0] ).astype(int ).tolist() for prediction in predictions]
boxes, scores, labels = ensemble_boxes.ensemble_boxes_wbf.weighted_boxes_fusion(boxes, scores, labels, weights=None, iou_thr=iou_thr, skip_box_thr=skip_box_thr)
 boxes = boxes*(image_size-1)
 return boxes, scores, labels
batch_size = 32
learning_rate = 0.001
epochs = 2<create_dataframe>
def format_prediction_string(boxes, scores):
pred_strings = []
for j in zip(scores, boxes):
pred_strings.append("{0:.4f} {1} {2} {3} {4}".format(j[0], j[1][0], j[1][1], j[1][2], j[1][3]))
return " ".join(pred_strings )
train_data = ImageDataset(train_list, transform=ImageTransform(size, mean, std), phase='train')
 val_data = ImageDataset(val_list, transform=ImageTransform(size, mean, std), phase='val')
 test_data = ImageDataset(test_list, transform=ImageTransform(size, mean, std), phase='val' )<load_pretrained>
results = []
for images, image_ids in data_loader:
predictions = make_tta_predictions(images)
 for i, image in enumerate(images):
boxes, scores, labels = run_wbf(predictions, image_index=i)
 boxes =(boxes*2 ).round().astype(np.int32 ).clip(min=0, max=1023)
 image_id = image_ids[i]
boxes[:, 2] = boxes[:, 2] - boxes[:, 0]
boxes[:, 3] = boxes[:, 3] - boxes[:, 1]
result = {
'image_id': image_id,
'PredictionString': format_prediction_string(boxes, scores)
 }
results.append(result )
<feature_engineering><EOS> 
test_df = pd.DataFrame(results, columns=['image_id', 'PredictionString'])
 test_df.to_csv('submission.csv', index=False)
 test_df.head()