Kaggle competition: Humpback Whale Identification
<SOS> metric: MAP@{K} Kaggle data source: humpback-whale-identification<load_pretrained>
!pip install lap
Lambda, MaxPooling2D, Reshape
%matplotlib inline
histories = []
steps = 0
tmp = keras.models.load_model('.. /input/piotte/mpiotte-standard.model')
 model.set_weights(tmp.get_weights())
 model.summary()<save_to_csv>
df = pd.read_csv('.. /input/humpback-whale-identification/train.csv')
 df.head()
def prepare_submission(threshold, filename):
vtop = 0
vhigh = 0
pos = [0, 0, 0, 0, 0, 0]
with open(filename, 'wt', newline='
')as f:
f.write('Image,Id
')
 for i, p in enumerate(tqdm(submit)) :
t = []
s = set()
a = score[i, :]
for j in list(reversed(np.argsort(a))):
h = known[j]
if a[j] < threshold and new_whale not in s:
pos[len(t)] += 1
s.add(new_whale)
 t.append(new_whale)
 if len(t)== 5: break;
for w in h2ws[h]:
assert w != new_whale
if w not in s:
if a[j] > 1.0:
vtop += 1
elif a[j] >= threshold:
vhigh += 1
s.add(w)
 t.append(w)
 if len(t)== 5: break;
if len(t)== 5: break;
if new_whale not in s: pos[5] += 1
assert len(t)== 5 and len(s)== 5
f.write(p + ',' + ' '.join(t[:5])+ '
')
 return vtop, vhigh, pos
tic = time.time()
h2ws = {}
for p, w in tagged.items() :
if w != new_whale:
h = p2h[p]
if h not in h2ws: h2ws[h] = []
if w not in h2ws[h]: h2ws[h].append(w)
 known = sorted(list(h2ws.keys()))
h2i = {}
for i, h in enumerate(known): h2i[h] = i
fknown = branch_model.predict_generator(FeatureGen(known), max_queue_size=20, workers=10, verbose=0)
 fsubmit = branch_model.predict_generator(FeatureGen(submit), max_queue_size=20, workers=10, verbose=0)
 score = head_model.predict_generator(ScoreGen(fknown, fsubmit), max_queue_size=20, workers=10, verbose=0)
 score = score_reshape(score, fknown, fsubmit)
 prepare_submission(0.99, 'submission.csv')
 toc = time.time()<set_options>
TRAIN_DF = '.. /input/humpback-whale-identification/train.csv'
SUB_Df = '.. /input/humpback-whale-identification/sample_submission.csv'
TRAIN = '.. /input/humpback-whale-identification/train/'
TEST = '.. /input/humpback-whale-identification/test/'
P2H = '.. /input/metadata/p2h.pickle'
P2SIZE = '.. /input/metadata/p2size.pickle'
BB_DF = ".. /input/metadata/bounding_boxes.csv"
tagged = dict([(p, w)for _, p, w in read_csv(TRAIN_DF ).to_records() ])
 submit = [p for _, p, _ in read_csv(SUB_Df ).to_records() ]
join = list(tagged.keys())+ submit
%%time
! nvidia-smi 
<set_options>
def expand_path(p):
if isfile(TRAIN + p):
return TRAIN + p
if isfile(TEST + p):
return TEST + p
return p
if isfile(P2SIZE):
print("P2SIZE exists.")
 with open(P2SIZE, 'rb')as f:
p2size = pickle.load(f)
 else:
p2size = {}
for p in tqdm(join):
size = pil_image.open(expand_path(p)).size
p2size[p] = size
warnings.filterwarnings("ignore" )<load_from_csv>
def match(h1, h2):
for p1 in h2ps[h1]:
for p2 in h2ps[h2]:
i1 = pil_image.open(expand_path(p1))
i2 = pil_image.open(expand_path(p2))
if i1.mode != i2.mode or i1.size != i2.size: return False
a1 = np.array(i1)
 a1 = a1 - a1.mean()
a1 = a1 / sqrt(( a1 ** 2 ).mean())
 a2 = np.array(i2)
 a2 = a2 - a2.mean()
a2 = a2 / sqrt(( a2 ** 2 ).mean())
 a =(( a1 - a2)** 2 ).mean()
if a > 0.1: return False
return True
if isfile(P2H):
print("P2H exists.")
 with open(P2H, 'rb')as f:
p2h = pickle.load(f)
 else:
p2h = {}
for p in tqdm(join):
img = pil_image.open(expand_path(p))
h = phash(img)
 p2h[p] = h
h2ps = {}
for p, h in p2h.items() :
if h not in h2ps: h2ps[h] = []
if p not in h2ps[h]: h2ps[h].append(p)
 hs = list(h2ps.keys())
 h2h = {}
for i, h1 in enumerate(tqdm(hs)) :
for h2 in hs[:i]:
if h1 - h2 <= 6 and match(h1, h2):
s1 = str(h1)
 s2 = str(h2)
 if s1 < s2: s1, s2 = s2, s1
h2h[s1] = s2
for p, h in p2h.items() :
h = str(h)
 if h in h2h: h = h2h[h]
p2h[p] = h
h2ps = {}
for p, h in p2h.items() :
if h not in h2ps: h2ps[h] = []
if p not in h2ps[h]: h2ps[h].append(p )
path_t=Path('.. /input/humpback-whale-identification/')
 path_b=Path('.. /input/')
 path1='.'
df = pd.read_csv(path_t/'train.csv');
fastai.__version__<define_variables>
def prefer(ps):
if len(ps)== 1: return ps[0]
best_p = ps[0]
best_s = p2size[best_p]
for i in range(1, len(ps)) :
p = ps[i]
s = p2size[p]
if s[0] * s[1] > best_s[0] * best_s[1]:
best_p = p
best_s = s
return best_p
h2p = {}
for h, ps in h2ps.items() :
h2p[h] = prefer(ps)
 len(h2p), list(h2p.items())[:5]
exclude_list=['0b1e39ff.jpg',
'0c11fa0c.jpg',
'1b089ea6.jpg',
'2a2ecd4b.jpg',
'2c824757.jpg',
'3e550c8a.jpg',
'56893b19.jpg',
'613539b4.jpg',
'6530809b.jpg',
'6b753246.jpg',
'6b9f5632.jpg',
'75c94986.jpg',
'7f048f21.jpg',
'7f7702dc.jpg',
'806cf583.jpg',
'95226283.jpg',
'a3e9070d.jpg',
'ade8176b.jpg',
'b1cfda8a.jpg',
'b24c8170.jpg',
'b7ea8be4.jpg',
'b9315c19.jpg',
'b985ae1e.jpg',
'baf56258.jpg',
'c4ad67d8.jpg',
'c5da34e7.jpg',
'c5e3df74.jpg',
'ced4a25c.jpg',
'd14f0126.jpg',
'e0b00a14.jpg',
'e6ce415f.jpg',
'e9bd2e9c.jpg',
'f4063698.jpg',
'f9ba7040.jpg']
new_whale_df = df[df.Id == "new_whale"]
train_df = df[~(df.Id == "new_whale")]
unique_labels = np.unique(train_df.Id.values)
 trn_imgs=train_df.copy().reset_index(drop=True)
 cnter = Counter(trn_imgs.Id.values)
 trn_imgs['cnt']=trn_imgs['Id'].apply(lambda x: cnter[x])
 trn_imgs['target'] = 0
trn_imgs1 = trn_imgs.copy()
trn_imgs1['target'] = 1
target_col = 3
trn_imgs.head(1)
 trn_imgs=trn_imgs[~trn_imgs.Image.isin(exclude_list)]<categorify>
p2bb = pd.read_csv(BB_DF ).set_index("Image")
 old_stderr = sys.stderr
sys.stderr = open('/dev/null' if platform.system() != 'Windows' else 'nul', 'w')
 sys.stderr = old_stderr
img_shape =(384, 384, 1)
 anisotropy = 2.15
crop_margin = 0.05
def read_img(fname,box_df,img,sz=224):
x0,y0,x1,y1 = tuple(box_df.loc[fname,['x0','y0','x1','y1']].tolist())
 l1,l0 = img.shape[1],img.shape[2]
b0,b1 = x1-x0, y1-y0
x0n,x1n = max(int(x0 - b0*0.05),0), min(int(x1 + b0*0.05),l0-1)
 y0n,y1n = max(int(y0 - b1*0.05),0), min(int(y1 + b1*0.05),l1-1)
 img=to_np(img)
 if not(x0 >= x1 or y0 >= y1):
None
img = img[:,y0n:y1n, x0n:x1n]
return Image(pil2tensor(img.astype(np.float)/255, np.float32 ).float() )<load_from_csv>
def build_transform(rotation, shear, height_zoom, width_zoom, height_shift, width_shift):

 rotation = np.deg2rad(rotation)
 shear = np.deg2rad(shear)
 rotation_matrix = np.array(
 [[np.cos(rotation), np.sin(rotation), 0], [-np.sin(rotation), np.cos(rotation), 0], [0, 0, 1]])
 shift_matrix = np.array([[1, 0, height_shift], [0, 1, width_shift], [0, 0, 1]])
 shear_matrix = np.array([[1, np.sin(shear), 0], [0, np.cos(shear), 0], [0, 0, 1]])
 zoom_matrix = np.array([[1.0 / height_zoom, 0, 0], [0, 1.0 / width_zoom, 0], [0, 0, 1]])
 shift_matrix = np.array([[1, 0, -height_shift], [0, 1, -width_shift], [0, 0, 1]])
 return np.dot(np.dot(rotation_matrix, shear_matrix), np.dot(zoom_matrix, shift_matrix))
<load_from_csv>
def read_cropped_image(p, augment):

 if p in h2p:
p = h2p[p]
size_x, size_y = p2size[p]
row = p2bb.loc[p]
x0, y0, x1, y1 = row['x0'], row['y0'], row['x1'], row['y1']
dx = x1 - x0
dy = y1 - y0
x0 -= dx * crop_margin
x1 += dx * crop_margin + 1
y0 -= dy * crop_margin
y1 += dy * crop_margin + 1
if x0 < 0:
x0 = 0
if x1 > size_x:
x1 = size_x
if y0 < 0:
y0 = 0
if y1 > size_y:
y1 = size_y
dx = x1 - x0
dy = y1 - y0
if dx > dy * anisotropy:
dy = 0.5 *(dx / anisotropy - dy)
 y0 -= dy
y1 += dy
else:
dx = 0.5 *(dy * anisotropy - dx)
 x0 -= dx
x1 += dx
trans = np.array([[1, 0, -0.5 * img_shape[0]], [0, 1, -0.5 * img_shape[1]], [0, 0, 1]])
 trans = np.dot(np.array([[(y1 - y0)/ img_shape[0], 0, 0], [0,(x1 - x0)/ img_shape[1], 0], [0, 0, 1]]), trans)
 if augment:
trans = np.dot(build_transform(
 random.uniform(-5, 5),
random.uniform(-5, 5),
random.uniform(0.8, 1.0),
random.uniform(0.8, 1.0),
random.uniform(-0.05 *(y1 - y0), 0.05 *(y1 - y0)) ,
random.uniform(-0.05 *(x1 - x0), 0.05 *(x1 - x0)) 
), trans)
 trans = np.dot(np.array([[1, 0, 0.5 *(y1 + y0)], [0, 1, 0.5 *(x1 + x0)], [0, 0, 1]]), trans)
 img = read_raw_image(p ).convert('L')
 img = img_to_array(img)
 matrix = trans[:2, :2]
offset = trans[:2, 2]
img = img.reshape(img.shape[:-1])
 img = affine_transform(img, matrix, offset, output_shape=img_shape[:-1], order=1, mode='constant',
cval=np.average(img))
img = img.reshape(img_shape)
 img -= np.mean(img, keepdims=True)
 img /= np.std(img, keepdims=True)+ K.epsilon()
return img
def read_for_training(p):

 return read_cropped_image(p, True)
 def read_for_validation(p):

 return read_cropped_image(p, False)
 p = list(tagged.keys())[312]
def open_4_channel2(fname):
fname = str(fname)
 bbox_df = pd.read_csv(path_b/'cropped-img'/'bounding_boxes.csv' ).set_index('Image')
 x0,y0,x1,y1=bbox_df.loc[fname[fname.rfind('/')+1:]]
area=(x0,y0,x1,y1)
 img = cv2.imread(fname)
 img=crop_loose_bbox(img,area)
 return Image(pil2tensor(img/255, np.float32 ).float() )<concatenate>
trn_imgs=trn_imgs.append(trn_imgs.loc[trn_imgs.cnt==2],ignore_index=True)
 trn_imgs=trn_imgs.append(trn_imgs.loc[trn_imgs.cnt==1],ignore_index=True )<count_unique_values>
def subblock(x, filter, **kwargs):
x = BatchNormalization()(x)
 y = x
y = Conv2D(filter,(1, 1), activation='relu', **kwargs )(y)
 y = BatchNormalization()(y)
 y = Conv2D(filter,(3, 3), activation='relu', **kwargs )(y)
 y = BatchNormalization()(y)
 y = Conv2D(K.int_shape(x)[-1],(1, 1), **kwargs )(y)
 y = Add()([x, y])
 y = Activation('relu' )(y)
 return y
def build_model(lr, l2, activation='sigmoid'):
regul = regularizers.l2(l2)
 optim = Adam(lr=lr)
 kwargs = {'padding': 'same', 'kernel_regularizer': regul}
inp = Input(shape=img_shape)
 x = Conv2D(64,(9, 9), strides=2, activation='relu', **kwargs )(inp)
 x = MaxPooling2D(( 2, 2), strides=(2, 2))(x)
 for _ in range(2):
x = BatchNormalization()(x)
 x = Conv2D(64,(3, 3), activation='relu', **kwargs )(x)
 x = MaxPooling2D(( 2, 2), strides=(2, 2))(x)
 x = BatchNormalization()(x)
 x = Conv2D(128,(1, 1), activation='relu', **kwargs )(x)
 for _ in range(4):
x = subblock(x, 64, **kwargs)
 x = MaxPooling2D(( 2, 2), strides=(2, 2))(x)
 x = BatchNormalization()(x)
 x = Conv2D(256,(1, 1), activation='relu', **kwargs )(x)
 for _ in range(4):
x = subblock(x, 64, **kwargs)
 x = MaxPooling2D(( 2, 2), strides=(2, 2))(x)
 x = BatchNormalization()(x)
 x = Conv2D(384,(1, 1), activation='relu', **kwargs )(x)
 for _ in range(4):
x = subblock(x, 96, **kwargs)
 x = MaxPooling2D(( 2, 2), strides=(2, 2))(x)
 x = BatchNormalization()(x)
 x = Conv2D(512,(1, 1), activation='relu', **kwargs )(x)
 for _ in range(4):
x = subblock(x, 128, **kwargs)
 x = GlobalMaxPooling2D()(x)
 branch_model = Model(inp, x)
 mid = 32
xa_inp = Input(shape=branch_model.output_shape[1:])
 xb_inp = Input(shape=branch_model.output_shape[1:])
 x1 = Lambda(lambda x: x[0] * x[1] )([xa_inp, xb_inp])
 x2 = Lambda(lambda x: x[0] + x[1] )([xa_inp, xb_inp])
 x3 = Lambda(lambda x: K.abs(x[0] - x[1]))([xa_inp, xb_inp])
 x4 = Lambda(lambda x: K.square(x))(x3)
 x = Concatenate()([x1, x2, x3, x4])
 x = Reshape(( 4, branch_model.output_shape[1], 1), name='reshape1' )(x)
 x = Conv2D(mid,(4, 1), activation='relu', padding='valid' )(x)
 x = Reshape(( branch_model.output_shape[1], mid, 1))(x)
 x = Conv2D(1,(1, mid), activation='linear', padding='valid' )(x)
 x = Flatten(name='flatten' )(x)
 x = Dense(1, use_bias=True, activation=activation, name='weighted-average' )(x)
 head_model = Model([xa_inp, xb_inp], x, name='head')
 img_a = Input(shape=img_shape)
 img_b = Input(shape=img_shape)
 xa = branch_model(img_a)
 xb = branch_model(img_b)
 x = head_model([xa, xb])
 model = Model([img_a, img_b], x)
 model.compile(optim, loss='binary_crossentropy', metrics=['binary_crossentropy', 'acc'])
 return model, branch_model, head_model
model, branch_model, head_model = build_model(64e-5, 0 )
val_idx=[]
for i in trn_imgs[trn_imgs.cnt>5].Id.unique() :
tmp=list(trn_imgs.loc[trn_imgs.Id==i].index.values)
 val_idx=val_idx+(random.sample(tmp,1))
len(val_idx)
 for i in trn_imgs[(trn_imgs.cnt<5)&(trn_imgs.cnt>2)].Id.unique() :
tmp=list(trn_imgs.loc[trn_imgs.Id==i].index.values)
 if len(val_idx)< 1300 :
val_idx=val_idx+(random.sample(tmp,1))
len(val_idx)
<define_variables>
h2ws = {}
new_whale = 'new_whale'
for p, w in tagged.items() :
if w != new_whale:
h = p2h[p]
if h not in h2ws: h2ws[h] = []
if w not in h2ws[h]: h2ws[h].append(w)
 for h, ws in h2ws.items() :
if len(ws)> 1:
h2ws[h] = sorted(ws)
 w2hs = {}
for h, ws in h2ws.items() :
if len(ws)== 1:
w = ws[0]
if w not in w2hs: w2hs[w] = []
if h not in w2hs[w]: w2hs[w].append(h)
 for w, hs in w2hs.items() :
if len(hs)> 1:
w2hs[w] = sorted(hs )
val_idx=list(trn_imgs.iloc[val_idx].index.values)
 trn_idx=set(list(trn_imgs.index.values)) -set(val_idx)
 df_i=trn_imgs.iloc[list(trn_idx)].reset_index(drop=True)
<categorify>
train = []
for hs in w2hs.values() :
if len(hs)> 1:
train += hs
random.shuffle(train)
 train_set = set(train)
 w2ts = {}
for w, hs in w2hs.items() :
for h in hs:
if h in train_set:
if w not in w2ts:
w2ts[w] = []
if h not in w2ts[w]:
w2ts[w].append(h)
 for w, ts in w2ts.items() :
w2ts[w] = np.array(ts)
 t2i = {}
for i, t in enumerate(train):
t2i[t] = i
<define_variables>
class TrainingData(Sequence):
def __init__(self, score, steps=1000, batch_size=32):

 super(TrainingData, self ).__init__()
self.score = -score
self.steps = steps
self.batch_size = batch_size
for ts in w2ts.values() :
idxs = [t2i[t] for t in ts]
for i in idxs:
for j in idxs:
self.score[
i, j] = 10000.0
self.on_epoch_end()
def __getitem__(self, index):
start = self.batch_size * index
end = min(start + self.batch_size, len(self.match)+ len(self.unmatch))
size = end - start
assert size > 0
a = np.zeros(( size,)+ img_shape, dtype=K.floatx())
 b = np.zeros(( size,)+ img_shape, dtype=K.floatx())
 c = np.zeros(( size, 1), dtype=K.floatx())
 j = start // 2
for i in range(0, size, 2):
a[i, :, :, :] = read_for_training(self.match[j][0])
 b[i, :, :, :] = read_for_training(self.match[j][1])
 c[i, 0] = 1
a[i + 1, :, :, :] = read_for_training(self.unmatch[j][0])
 b[i + 1, :, :, :] = read_for_training(self.unmatch[j][1])
 c[i + 1, 0] = 0
j += 1
return [a, b], c
def on_epoch_end(self):
if self.steps <= 0: return
self.steps -= 1
self.match = []
self.unmatch = []
_, _, x = lapjv(self.score)
 y = np.arange(len(x), dtype=np.int32)
 for ts in w2ts.values() :
d = ts.copy()
while True:
random.shuffle(d)
 if not np.any(ts == d): break
for ab in zip(ts, d): self.match.append(ab)
 for i, j in zip(x, y):
if i == j:
print(self.score)
 print(x)
 print(y)
 print(i, j)
 assert i != j
self.unmatch.append(( train[i], train[j]))
self.score[x, y] = 10000.0
self.score[y, x] = 10000.0
random.shuffle(self.match)
 random.shuffle(self.unmatch)
 assert len(self.match)== len(train)and len(self.unmatch)== len(train)
 def __len__(self):
return(len(self.match)+ len(self.unmatch)+ self.batch_size - 1)// self.batch_size
score = np.random.random_sample(size=(len(train), len(train)))
 data = TrainingData(score)
(a, b), c = data[0]
test_ids = list(sorted({fname for fname in os.listdir(path_t/'test')}))
test_fnames = [path_t/'test'/test_id for test_id in test_ids]
test_fnames[:3]<categorify>
def set_lr(model, lr):
K.set_value(model.optimizer.lr, float(lr))
def get_lr(model):
return K.get_value(model.optimizer.lr)
 def score_reshape(score, x, y=None):

 if y is None:
m = np.zeros(( x.shape[0], x.shape[0]), dtype=K.floatx())
 m[np.triu_indices(x.shape[0], 1)] = score.squeeze()
m += m.transpose()
else:
m = np.zeros(( y.shape[0], x.shape[0]), dtype=K.floatx())
 iy, ix = np.indices(( y.shape[0], x.shape[0]))
ix = ix.reshape(( ix.size,))
iy = iy.reshape(( iy.size,))
m[iy, ix] = score.squeeze()
return m
def compute_score(verbose=1):

 features = branch_model.predict_generator(FeatureGen(train, verbose=verbose), max_queue_size=12, workers=6,
verbose=0)
 score = head_model.predict_generator(ScoreGen(features, verbose=verbose), max_queue_size=12, workers=6, verbose=0)
 score = score_reshape(score, features)
 return features, score
def make_steps(step, ampl):

 global w2ts, t2i, steps, features, score, histories
random.shuffle(train)
 w2ts = {}
for w, hs in w2hs.items() :
for h in hs:
if h in train_set:
if w not in w2ts: w2ts[w] = []
if h not in w2ts[w]: w2ts[w].append(h)
 for w, ts in w2ts.items() : w2ts[w] = np.array(ts)
 t2i = {}
for i, t in enumerate(train): t2i[t] = i
features, score = compute_score()
history = model.fit_generator(
 TrainingData(score + ampl * np.random.random_sample(size=score.shape), steps=step, batch_size=32),
initial_epoch=steps, epochs=steps + step, max_queue_size=12, workers=6, verbose=1 ).history
steps += step
history['epochs'] = steps
history['ms'] = np.mean(score)
 history['lr'] = get_lr(model)
 print(history['epochs'], history['lr'], history['ms'])
 histories.append(history )
src1.train.x.create_func = open_4_channel2
src1.train.x.open = open_4_channel2
src1.valid.x.create_func = open_4_channel2
src1.valid.x.open = open_4_channel2
src1.add_test(test_fnames);
src1.test.x.create_func = open_4_channel2
src1.test.x.open = open_4_channel2
trn_tfms,_ = get_transforms(do_flip=False, flip_vert=True, max_rotate=5., max_zoom=1.08,
max_lighting=0.15, max_warp=0.)
data1 =(src1.transform(( trn_tfms,trn_tfms), size=224,resize_method=ResizeMethod.SQUISH)
.databunch(bs=64,num_workers=0 ).normalize(imagenet_stats))
data2 =(src1.transform(( trn_tfms,trn_tfms), size=484,resize_method=ResizeMethod.SQUISH)
.databunch(bs=36,num_workers=0 ).normalize(imagenet_stats))<categorify>
histories = []
steps = 0
if isfile('.. /input/humpback-whale-identification-model-files/mpiotte-standard.model'):
print('pretrained exist.')
 tmp = keras.models.load_model('.. /input/humpback-whale-identification-model-files/mpiotte-standard.model')
 model.set_weights(tmp.get_weights())
 else:
make_steps(10, 1000)
 ampl = 100.0
for _ in range(2):
print('noise ampl.= ', ampl)
 make_steps(5, ampl)
 ampl = max(1.0, 100 ** -0.1 * ampl)
<import_modules>
def prepare_submission(threshold, filename):

 vtop = 0
vhigh = 0
pos = [0, 0, 0, 0, 0, 0]
with open(filename, 'wt', newline='
')as f:
f.write('Image,Id
')
 for i, p in enumerate(tqdm(submit)) :
t = []
s = set()
a = score[i, :]
for j in list(reversed(np.argsort(a))):
h = known[j]
if a[j] < threshold and new_whale not in s:
pos[len(t)] += 1
s.add(new_whale)
 t.append(new_whale)
 if len(t)== 5: break;
for w in h2ws[h]:
assert w != new_whale
if w not in s:
if a[j] > 1.0:
vtop += 1
elif a[j] >= threshold:
vhigh += 1
s.add(w)
 t.append(w)
 if len(t)== 5: break;
if len(t)== 5: break;
if new_whale not in s: pos[5] += 1
assert len(t)== 5 and len(s)== 5
f.write(p + ',' + ' '.join(t[:5])+ '
')
 return vtop, vhigh, pos
from fastai.metrics import accuracy<load_pretrained>
tic = time.time()
h2ws = {}
for p, w in tagged.items() :
if w != new_whale:
h = p2h[p]
if h not in h2ws: h2ws[h] = []
if w not in h2ws[h]: h2ws[h].append(w)
 known = sorted(list(h2ws.keys()))
h2i = {}
for i, h in enumerate(known): h2i[h] = i
fknown = branch_model.predict_generator(FeatureGen(known), max_queue_size=20, workers=10, verbose=0)
 fsubmit = branch_model.predict_generator(FeatureGen(submit), max_queue_size=20, workers=10, verbose=0)
 score = head_model.predict_generator(ScoreGen(fknown, fsubmit), max_queue_size=20, workers=10, verbose=0)
 score = score_reshape(score, fknown, fsubmit)
 prepare_submission(0.99, 'submission_for_em.csv')
 toc = time.time()
print("Submission time: ",(toc - tic)/ 60.)
def dense(pre):
model = m.densenet121(pretrained=pre)
 model.classifier =(nn.Linear(1024, 5004))
return model
def _densenet_split(m): return(m[0][0][6],m[1] )<compute_test_metric>
sub_files = ['.. /input/em-whale/submission_0.csv',
'.. /input/em-whale/submission_7.csv',
'.. /input/em-whale/submission_8.csv',
'.. /input/em-whale/submission_3.csv']
sub_weight = [0.9001**2,
0.7719**2,
0.8229**2,
0.8903**2]
Hlabel = 'Image'
Htarget = 'Id'
npt = 6
place_weights = {}
for i in range(npt):
place_weights[i] =(1 /(i + 1))
print(place_weights)
 lg = len(sub_files)
 sub = [None]*lg
for i, file in enumerate(sub_files):
print("Reading {}: w={} - {}".format(i, sub_weight[i], file))
reader = csv.DictReader(open(file,"r"))
sub[i] = sorted(reader, key=lambda d: str(d[Hlabel]))
out = open("submission.csv", "w", newline='')
 writer = csv.writer(out)
 writer.writerow([Hlabel,Htarget])
 for p, row in enumerate(sub[0]):
target_weight = {}
for s in range(lg):
row1 = sub[s][p]
for ind, trgt in enumerate(row1[Htarget].split(' ')) :
target_weight[trgt] = target_weight.get(trgt,0)+(place_weights[ind]*sub_weight[s])
 tops_trgt = sorted(target_weight, key=target_weight.get, reverse=True)[:npt]
writer.writerow([row1[Hlabel], " ".join(tops_trgt)])
 out.close()