內政部
After 1990 elections and 1997 elections, Chaudhry Shujaat served as Interior ministry. He was one of high-profile cabinet member of Prime minister Nawaz Sharif who appointed Shujaat as the President of the PML-N in Punjab from 1997 to 1999 However, Hussain mounted serious disagreement and confronted Nawaz Sharif after Sharif imposing economic emergency in 1998. Hussain's relations became extremely hostile during the Kargil war and claiming that Sharif had been briefed by chief of army staff general Pervez Musharraf six times as opposed to Sharif claiming not having "knowledge".