Scottsdale Scorpions
From 2012 to 2013, Ebert served as the pitching coach for the Cincinnati Reds' rookie level Arizona League Reds. He coached in the same capacity for their rookie Billings Mustangs (2014–15) and Class A Dayton Dragons (2016–17). In 2018, he was the Reds' major league pitching coach and coached pitchers for the Arizona Fall League's Scottsdale Scorpions that offseason. He returned to Billings as pitching coach in 2019. In 2020, he became manager of the rookie Greeneville Reds.