The Smoking Man
Mulder meets with the Shooter again, who tells him that Gibson is a missing link. Mulder believes that Gibson has genes that are dormant in most humans. The Smoking Man dismisses the Well-Manicured Man's concerns about Mulder's actions. At the prison, the guard kills the Shooter. Diana Fowley, protecting Gibson in a hotel room, is shot shortly afterwards, and Gibson is captured by the Smoking Man's minions. Skinner tells Mulder of the Shooter's death, and that a flattened Morley cigarette box was found in his cell. Mulder confronts Spender, accusing him of working with the Smoking Man. The Smoking Man turns Gibson over to the Well-Manicured Man. Scully is informed by Skinner that the Justice Department is seeking to have the X-Files shut down. Mulder realizes that this was all part of a plan. The Smoking Man takes Samantha's X-File from Mulder's office, and sets it on fire. As he leaves, he meets Jeffrey, and tells him that he's his father. By the time Mulder and Scully arrive, the X-Files are completely destroyed.