RB Leipzig
He joined RB Leipzig on 31 January 2012 on a one-and-a-half-year contract. Hoheneder made 11 appearances for RB Leipzig during the 2011–12 season, the majority of which as a substitute, scoring once. In April 2013, he signed a two-year contract extension with RB Leipzig, keeping him at the club until 30 June 2015. Hoheneder was a regular player for RB Leipzig in the 2012–13 and the 2013–14 season, but made just 10 appearances for RB Leipzig during the 2014–15 season.