k3ylabs/cosoco-image-dataset huggingface dataset:
Package: r-doc-html (4.1.2-1ubuntu2)
Section: universe/doc
Homepage: http://www.r-project.org/
Description:  GNU R html manuals for statistical computing system R is a system for statistical computation and graphics.  It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R.  It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so.  The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations.  There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-<name>'. . This package provides the R manuals in html format. The sibling packages r-doc-pdf and r-doc-info provides the same manuals.
Package: r-doc-info (4.1.2-1ubuntu2)
Section: universe/doc
Homepage: http://www.r-project.org/
Depends: dpkg (>= 1.15.4) | install-info
Description:  GNU R info manuals statistical computing system R is a system for statistical computation and graphics.  It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R.  It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so.  The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations.  There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-<name>'. . This package provides the R manuals in info format. The sibling packages r-doc-html and r-doc-pdf provide the same manuals.
Package: r-doc-pdf (4.1.2-1ubuntu2)
Section: universe/doc
Homepage: http://www.r-project.org/
Description:  GNU R pdf manuals for statistical computing system R is a system for statistical computation and graphics.  It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R.  It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so.  The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations.  There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-<name>'. . This package provides the R manuals in pdf format. The sibling packages r-doc-html and r-doc-info provides the same manuals.
Package: r-mathlib (4.1.2-1ubuntu2)
Section: universe/math
Homepage: http://www.r-project.org/
Depends: libc6 (>= 2.29)
Description:  GNU R standalone mathematics library R is a system for statistical computation and graphics.  It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R.  It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so.  The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations.  There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-<name>'. . This package provides the libRmath shared and static libraries which can be called from standalone C or C++ code.
Package: r-other-amsmercury (1.3.0-4)
Section: universe/gnu-r
Homepage: https://hci.iwr.uni-heidelberg.de/hci/softwares/nitpick
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 4.1.1), r-base-core (>= 4.0.2-1build1), r-api-4.0
Description:  efficient calculation of accurate masses and abundances of isotopic peaks This GNU R package provides efficient calculation of accurate masses and abundances of isotopic peaks.  It is a precondition for R NITPICK which does peak identification for mass spectrometry data.
Package: r-other-ascat (2.5.2-3)
Section: universe/gnu-r
Homepage: https://github.com/Crick-CancerGenomics/ascat
Depends: r-base-core (>= 4.0.2-1), r-api-4.0, r-cran-rcolorbrewer
Description:  Allele-Specific Copy Number Analysis of Tumours ASCAT (allele-specific copy number analysis of tumors) is a allele- specific copy number analysis of the in vivo breast cancer genome. It can be used to accurately dissect the allele-specific copy number of solid tumors, simultaneously estimating and adjusting for both tumor ploidy and nonaberrant cell admixture.
Package: r-other-chbutils (0.1+git20171026.a226cee-2)
Section: universe/gnu-r
Homepage: https://github.com/hbc/CHBUtils
Depends: r-base-core (>= 4.0.2-1build1), r-api-4.0
Description:  GNU R utilities from Harvard School of Public Health Bioinformatics This GNU R package contains the following functions:  chb_utils-package     chb_utils  annotate_df           Annotate Dataframe containing Ensembl IDs with Gene                        Symbols and Descriptions  boxplotoutliers       Cel file IDs of intensity boxplot outlier arrays (in                        characters).  chb_utils             chb_utils  col2rownames          add a column to a dataframe consisting of the                        current rownames  convertIDs            Get other Ids for genes in the same order  create_report         Create report of QC  getTFpairs            Get mouse TF-target pairs from opossum database  get_biomart           Get biomart annotation from id  ggheatmap             generate a heatmap + dendrograms, ggplot2 style  ggheatmap.show        Display a ggheatmap  ggplotDispEsts        Plot Dispersion Estimates - nicer ggplot version of                        DESeq graph  mds                   Plot MDS  mdsplot.RGset         MDS (MultiDimensional Scaling) Plots  nuseoutliers          Cel file IDs of intensity NUSE outlier arrays (in                        characters).  PCAplot.cds           Pairwise Principal Component Analysis Plots of                        CountDataSet objects  PCAplot.eset          Pairwise Principal Component Analysis Plots                        Plots the differntially expressed genes on an MA  plotDE                plot, ggplot style If adjusted pvalues are present,                        colors those that pass cutoff red  plot_dendro           ggplot based dendrogram plot  print_enrichGO        Clean and print results from enrichGO                        Plots the pvalue quantiles against the uniform  qqplot_JH             distribution. If adjusted pvalues are present,                        colors those that pass cutoff red  rleoutliers           Cel file IDs of intensity RLE outlier arrays (in                        characters).  row2colnames          add a column to a dataframe consisting of the                        current rownames  runGO                 Run GO using clusterprofiler  variance_by_component Plot PC importance  volcano_density_plot  Create volcano plot from log2FC and adjusted pvalues                        data frame  write_report          Write report of QC
Package: r-other-curvefdp (2.0-6build1)
Section: universe/gnu-r
Homepage: https://hci.iwr.uni-heidelberg.de/hci/softwares/curvefdp
Depends: r-base-core (>= 4.0.0.20200528-1), r-api-4.0, r-cran-mixtools
Description:  estimation of confidence levels for peptide identifications This is a GNU R package for the Analytical Chemistry publication entitled 'Estimating the Confidence of Peptide Identifications without Decoy Databases'.  The function curveFDR(scores) fits a gaussian mixture model to a score distribution of peptide identifications and thereby allows the estimation of confidence levels based on the false discvory proportion.
Package: r-other-iwrlars (0.9-5-4build1)
Section: universe/gnu-r
Homepage: https://hci.iwr.uni-heidelberg.de/hci/softwares/nitpick
Depends: r-base-core (>= 4.0.0.20200528-1), r-api-4.0
Description:  least angle regression, lasso, positive lasso and forward stagewise This GNU R package provides efficient procedures for fitting an entire lasso sequence with the cost of a single least squares fit. Least angle regression and infinitessimal forward stagewise regression are related to the lasso described in http://www-stat.stanford.edu/~hastie/Papers/#LARS. . This is a modified version of the original lars package by Hastie and Efron, providing a LARS modification for non-negative lasso.
Package: r-other-kcha-psiplot (2.3.0-2)
Section: universe/gnu-r
Homepage: https://github.com/kcha/psiplot
Depends: r-base-core (>= 4.1.2-1), r-api-4.0, r-cran-mass, r-cran-dplyr, r-cran-tidyr, r-cran-purrr, r-cran-readr, r-cran-magrittr, r-cran-ggplot2
Description:  plots relative abundance alterantively spliced transcripts Provides functions to create plots of PSI values of alternatively-spliced exons or cRPKMs. Requires PSI cRPKM data generated by the program vast-tools (https://github.com/vastgroup/vast-tools).
Package: r-other-mott-happy.hbrem (2.4-5)
Section: universe/gnu-r
Homepage: http://nebc.nerc.ac.uk/bioinformatics/documentation/happy/happy.txt
Depends: r-base-core (>= 4.1.2-1ubuntu1), r-api-4.0, r-cran-g.data, libc6 (>= 2.14)
Description:  GNU R package for fine-mapping complex diseases Happy is an R interface into the HAPPY C package for fine-mapping Quantitative Trait Loci (QTL) in Heterogenous Stocks (HS). An HS is an advanced intercross between (usually eight) founder inbred strains of mice. HS are suitable for fine-mapping QTL.  It uses a multipoint analysis which offers significant improvements in statistical power to detect QTLs over that achieved by single-marker association. . The happy package is an extension of the original C program happy; it uses the C code to compute the probability of descent from each of the founders, at each locus position, but the happy packager allows a much richer range of models to be fit to the data. . Read /usr/share/doc/r-other-mott-happy/README.Debian for a more detailed explanation.
Package: r-other-nitpick (2.0-7build1)
Section: universe/gnu-r
Homepage: https://hci.iwr.uni-heidelberg.de/hci/softwares/nitpick
Depends: r-base-core (>= 4.0.0.20200528-1), r-api-4.0, r-other-amsmercury, r-other-iwrlars
Description:  peak identification for mass spectrometry data This R package allows reliable extraction of features from mass spectra and helps in the automated analysis of proteomic mass spectrometry (MS) experiments. . This is the NITPICK implementation for peak picking in MS spectra.
Package: r-other-rajewsky-dropbead (0.3.1+git20180221.d746c6f+ds-3)
Section: universe/gnu-r
Homepage: https://github.com/rajewsky-lab/dropbead
Depends: r-base-core (>= 4.0.2-1build1), r-api-4.0, r-cran-ggplot2, r-cran-rcolorbrewer, r-cran-gridextra, r-cran-gplots, r-cran-plyr
Description:  Basic Exploration and Analysis of Drop-seq Data Dropbead offers a quick and straightforward way to explore and perform basic analysis of single cell sequencing data coming from droplet sequencing. It has been particularly tailored for Drop-seq.
Package: r-other-wasabi (1.0.1-2build1)
Section: universe/gnu-r
Homepage: https://github.com/COMBINE-lab/wasabi
Depends: r-base-core (>= 4.0.0.20200528-1), r-api-4.0, r-cran-data.table, r-cran-rjson, r-bioc-rhdf5
Description:  prepare Sailfish and Salmon output for downstream analysis using GNU R This GNU R package converts the output of the Sailfish and Salmon RNA-seq quantification tools so that it can be used with the Sleuth differential analysis package.
Package: r-other-x4r (1.0.1+git20150806.c6bd9bd-3)
Section: universe/gnu-r
Homepage: https://github.com/overcoil/X4R
Depends: r-base-core (>= 4.0.2-1build1), r-api-4.0, r-cran-rcpp (>= 0.10.4), libc6 (>= 2.15), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2)
Description:  XMLA/MDX cube tool for R Enable R to source data from an OLAP cube via XMLA by specifying an MDX query.
Package: r-recommended (4.1.2-1ubuntu2)
Section: universe/math
Homepage: http://www.r-project.org/
Depends: r-base-core (>= 4.1.2-1ubuntu2), r-cran-boot (>= 1.2.19), r-cran-cluster (>= 1.9.6-2), r-cran-foreign (>= 0.7-2), r-cran-kernsmooth (>= 2.2.14), r-cran-lattice (>= 0.10.11), r-cran-mgcv (>= 1.1.5), r-cran-nlme (>= 3.1.52), r-cran-rpart (>= 3.1.20), r-cran-survival (>= 2.13.2-1), r-cran-mass, r-cran-class, r-cran-nnet, r-cran-spatial, r-cran-codetools, r-cran-matrix
Description:  GNU R collection of recommended packages [metapackage] R is a system for statistical computation and graphics.  It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R.  It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so.  The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations.  There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-<name>'. . This Debian package is now a metapackage that depends on a set of packages that are recommended by the upstream R core team as part of a complete R distribution, and distributed along with the source of R itself, as well as directly via the CRAN network of mirrors. This set comprises the following packages (listed in their upstream names):  - KernSmooth: Functions for kernel smoothing for Wand & Jones (1995)  - Matrix: Classes and methods for dense and sparse matrices and    operations on them using Lapack and SuiteSparse  - MASS, class, nnet and spatial: packages from Venables and Ripley,    `Modern Applied Statistics with S' (4th edition).  - boot: Bootstrap R (S-Plus) Functions from the book "Bootstrap Methods    and Their Applications" by A.C. Davison and D.V. Hinkley (1997).  - cluster: Functions for clustering (by Rousseeuw et al.)  - codetools: Code analysis tools for R  - foreign: Read data stored by Minitab, S, SAS, SPSS, Stata, ...  - lattice: Implementation of Trellis (R) graphics  - mgcv: Multiple smoothing parameter estimation and GAMs by GCV  - nlme: Linear and nonlinear mixed effects models  - rpart: Recursive partitioning and regression trees  - survival: Survival analysis, including penalised likelihood.
Package: r-revolution-revobase (3.0.0-1ubuntu3)
Section: multiverse/gnu-r
Depends: libc6 (>= 2.2.5), revolution-mkl, revolution-r
Description:  REvolution Computing R Math Kernel Libraries support This package contains functions for controlling multithreading.
Package: r10k (3.7.0-2.1ubuntu1)
Section: universe/ruby
Homepage: https://github.com/puppetlabs/r10k
Depends: ruby | ruby-interpreter, ruby-colored2, ruby-cri (>= 2.6.1), ruby-gettext-setup (>= 0.5), ruby-log4r (>= 1.1.10), ruby-minitar (>= 0.6.1), ruby-multi-json (>= 1.10), ruby-puppet-forge (>= 3.0.0~), ruby-rugged (>= 0.24.0)
Description:  Puppet environment and module deployment R10K provides a general purpose toolset for deploying Puppet environments and modules. It implements the Puppetfile format and provides a native implementation of Puppet dynamic environments.
Package: r4d (1.7-1)
Section: multiverse/net
Homepage: https://github.com/ci-rt/r4d
Depends: python3-pysimplesoap, python3-snimpy, python3-sqlalchemy, python3:any, snmp-mibs-downloader, lsb-base
Description:  Remote For Device-under-test (R4D) Daemon Remote For Device-under-test (R4D) Daemon acts as controlling server for test racks. Each Rack contains a serial device server and a power control switch. A rack can host several DUTs (device-under-test). r4d connects to the serial device server and the power switch to perform actions on user request. A user connects to r4d through a SOAP interface. . This package contains the controlling daemon and administration tool.
Package: r6rs-nanopass-dev (1.9.2-1)
Section: universe/lisp
Homepage: https://github.com/nanopass/nanopass-framework-scheme
Description:  embedded DSL for writing compilers in Scheme The nanopass framework is an embedded DSL for writing compilers in Scheme as a series of small, single-purpose passes. It is used in the Chez Scheme compiler.
Package: r8125-dkms (9.007.01-3ubuntu0.2)
Section: multiverse/kernel
Homepage: https://www.realtek.com/en/component/zoo/category/network-interface-controllers-10-100-1000m-gigabit-ethernet-pci-express-software
Depends: dkms (>= 2.1.0.0)
Description:  dkms source for the r8125 network driver r8125 is the Linux 2.5G Ethernet device driver released by RealTek for their network controller. . This package provides the dkms source code for the r8125 kernel modules. Kernel source or headers are required to compile these modules.
Package: r8168-dkms (8.049.02-1ubuntu1.2)
Section: universe/kernel
Homepage: https://www.realtek.com/en/component/zoo/category/network-interface-controllers-10-100-1000m-gigabit-ethernet-pci-express-software
Depends: dkms (>= 2.1.0.0)
Description:  dkms source for the r8168 network driver r8168 is the Linux device driver released by RealTek for their network controllers with PCI-Express interface:  * 10/100/1000M Gigabit Ethernet: RTL8111B, RTL8111C, RTL8111D, RTL8111E,    RTL8111F, RTL8111G(S), RTL8111H(S), RTL8118(A)(S), RTL8119i, RTL8111L,    RTL8168B, RTL8168E, RTL8168H, RTL8111DP, RTL8111EP, RTL8111FP, RTL8411,    RTL8411B . This driver should only be used for devices not yet supported by the in-kernel driver r8169. Please see the README.Debian for instructions how to report bugs against r8169 that made it necessary to use r8168-dkms. . Installation of the r8168-dkms package will disable the in-kernel r8169 module. To re-enable r8169, the r8168-dkms package must be purged. . This package provides the dkms source code for the r8168 kernel modules. Kernel source or headers are required to compile these modules.
Package: rabbit-mode (3.0.0-4)
Section: universe/x11
Homepage: https://rabbit-shocker.org
Depends: dh-elpa-helper, emacsen-common, rabbit, rdtool-elisp
Description:  Emacs-lisp rabbit-mode for writing RD document using Rabbit Rabbit is an application to do presentations with RD documents. RD is a simple, easy-to-read, and easy-to-write text format like Wiki. Rabbit has many noteworthy features, which distinguish this application from other presentation tools. . This package provides Emacs major-mode for editing RD document using Rabbit
Package: rabbit (3.0.0-4)
Section: universe/x11
Homepage: https://rabbit-shocker.org
Depends: libjs-prototype, ruby | ruby-interpreter, ruby-coderay (>= 1.0.0), ruby-faraday, ruby-gettext (>= 3.0.1), ruby-gtk3, ruby-hikidoc, ruby-kramdown-parser-gfm, ruby-nokogiri, ruby-poppler (>= 3.2.5), ruby-rd, ruby-rouge, ruby-rsvg2, ruby-rt
Description:  presentation tool using RD, a simple text format Rabbit is an application to do presentations with RD documents.  RD is a simple, easy-to-read, and easy-to-write text format like Wiki.  Rabbit has many noteworthy features, which distinguish this application from other presentation tools. .  * Slide looks are defined with Ruby and customizable.  * Various keyboard interfaces.  * Mouse gesture support.  * Slides can contain many image formats: EPS, SVG, GIMP, and Dia.  * Rabbit can be a server and you can access it with the dRuby interface.  * and more...
Package: rabbiter (2.0.4-4)
Section: universe/ruby
Homepage: https://rabbit-shocker.org/en/rabbiter/
Depends: rabbit, ruby:any, ruby-gettext, ruby-gio2, ruby-twitter-oauth, ruby-twitter
Description:  Twitter client for Rabbit Rabbiter is a tool that collects tweets related to the talk and sends them to Rabbit as comments. . Rabbiter receives comments from twitter and sends them to Rabbit. Rabbit shows them in your slides. It is very useful when you talk on public events/conferences.
Package: rabbitmq-server (3.9.13-1ubuntu0.22.04.2)
Section: net
Homepage: https://www.rabbitmq.com/
Depends: adduser, erlang-base | erlang-base-hipe, erlang-crypto (>= 1:24.0), erlang-eldap (>= 1:24.0), erlang-inets (>= 1:24.0), erlang-mnesia (>= 1:24.0), erlang-os-mon (>= 1:24.0), erlang-parsetools (>= 1:24.0), erlang-public-key (>= 1:24.0), erlang-runtime-tools (>= 1:24.0), erlang-ssl (>= 1:24.0), erlang-syntax-tools (>= 1:24.0), erlang-tools (>= 1:24.0), erlang-xmerl (>= 1:24.0), logrotate, lsb-base, openssl, socat, python3:any
Description:  AMQP server written in Erlang RabbitMQ is an implementation of AMQP, the emerging standard for high performance enterprise messaging. The RabbitMQ server is a robust and scalable implementation of an AMQP broker.