k3ylabs/cosoco-image-dataset huggingface dataset:
Package: trilinos-doc (13.2.0-1ubuntu1)
Section: universe/doc
Homepage: https://trilinos.org/about/documentation/
Depends: libjs-jquery
Description:  object-oriented framework for large-scale problems - documentation The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages. . This is documentation for the Trilinos libraries in HTML format. Some pages point to header files provided in the corresponding -dev package, so it is suggested to install the latter as well.
Package: trim-galore (0.6.7-1)
Section: universe/science
Homepage: https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/
Depends: perl:any, cutadapt
Description:  automate quality and adapter trimming for DNA sequencing Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control, with some added functionality to remove biased methylation positions for RRBS sequence files (for directional, non-directional (or paired-end) sequencing). It's main features are:  * For adapter trimming, Trim Galore! uses the first 13 bp of Illumina    standard adapters ('AGATCGGAAGAGC') by default (suitable for both ends    of paired-end libraries), but accepts other adapter sequence, too  * For MspI-digested RRBS libraries, Trim Galore! performs quality and    adapter trimming in two subsequent steps. This allows it to remove    2 additional bases that contain a cytosine which was artificially    introduced in the end-repair step during the library preparation  * For any kind of FastQ file other than MspI-digested RRBS, Trim    Galore! can perform single-pass adapter- and quality trimming  * The Phred quality of basecalls and the stringency for adapter removal    can be specified individually  * Trim Galore! can remove sequences if they become too short during    the trimming process. For paired-end files Trim Galore! removes entire    sequence pairs if one (or both) of the two reads became shorter than    the set length cutoff. Reads of a read-pair that are longer than a    given threshold but for which the partner read has become too short    can optionally be written out to single-end files. This ensures that    the information of a read pair is not lost entirely if only one read    is of good quality  * Trim Galore! can trim paired-end files by 1 additional bp from the 3'    end of all reads to avoid problems with invalid alignments with Bowtie 1  * Trim Galore! accepts and produces standard or gzip compressed FastQ files  * FastQC can optionally be run on the resulting output files once    trimming has completed
Package: trimage (1.0.6-1)
Section: universe/graphics
Homepage: https://trimage.org
Depends: python3:any, python3-pyqt5, optipng, advancecomp, jpegoptim, pngcrush
Description:  GUI and command-line interface to optimize image files Trimage is a cross-platform GUI and command-line interface to optimize image files via optipng, advpng, pngcrush and jpegoptim, depending on the filetype (currently, PNG and JPG files are supported). All image files are losslessly compressed on the highest available compression levels. Trimage gives you various input functions to fit your own workflow: A regular file dialog, dragging and dropping and various command line options.
Package: trimmomatic (0.39+dfsg-2)
Section: universe/science
Homepage: http://www.usadellab.org/cms/index.php?page=trimmomatic
Depends: libjbzip2-java, default-jre
Description:  flexible read trimming tool for Illumina NGS data Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line. . The current trimming steps are:  * ILLUMINACLIP: Cut adapter and other illumina-specific sequences from    the read.  * SLIDINGWINDOW: Perform a sliding window trimming, cutting once thes    average quality within the window falls below a threshold.  * LEADING: Cut bases off the start of a read, if below a threshold quality  * TRAILING: Cut bases off the end of a read, if below a threshold quality  * CROP: Cut the read to a specified length  * HEADCROP: Cut the specified number of bases from the start of the read  * MINLENGTH: Drop the read if it is below a specified length  * TOPHRED33: Convert quality scores to Phred-33  * TOPHRED64: Convert quality scores to Phred-64 It works with FASTQ (using phred + 33 or phred + 64 quality scores, depending on the Illumina pipeline used), either uncompressed or gzipp'ed FASTQ. Use of gzip format is determined based on the .gz extension.
Package: trinculo (0.96+dfsg-4)
Section: universe/science
Homepage: https://sourceforge.net/projects/trinculo/
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), liblapack3 | liblapack.so.3, libstdc++6 (>= 11)
Description:  toolkit to carry out genetic association for multi-category phenotypes An efficient toolkit for carrying out genetic association for multi-category phenotypes. Implements multinomial and ordinal association incorporating covariates, conditional analysis, empirical and non-emperical priors and fine-mapping.
Package: trinity (1.9+git20200331.4d2343bd18c7b-2)
Section: universe/utils
Homepage: http://codemonkey.org.uk/projects/trinity/
Depends: libc6 (>= 2.27)
Description:  system call fuzz tester As 'fuzz testing' suggests, trinity calls syscalls at random, with random arguments. Where Trinity differs is that the arguments it passes are not purely random. . If a syscall took, for example, a file descriptor as an argument, one of the first things kernels does is validate that fd, if is not valid the kernel would just reject it as -EINVAL. . So on startup, Trinity creates a list of file descriptors, by opening pipes, scanning sysfs, procfs, /dev, and creates a bunch of sockets using random network protocols. Then when a syscall needs an fd, it gets passed one of these at random. . Trinity also shares those file descriptors between multiple threads, which causes havoc sometimes. . Warning: This program may seriously corrupt your files, including any of those that may be writable on mounted network file shares.  It may create network packets that may cause disruption on your local network. Run at your own risk.
Package: trinityrnaseq-examples (2.13.2+dfsg-3)
Section: universe/science
Homepage: https://trinityrnaseq.github.io/
Depends: perl:any, r-base-core
Description:  RNA-Seq De novo Assembly common example and testing files Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes. . This package contains testing & example files.
Package: trinityrnaseq (2.13.2+dfsg-3)
Section: universe/science
Homepage: https://trinityrnaseq.github.io/
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libgomp1 (>= 6), libhts3 (>= 1.10), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4), perl:any, jaligner, libgetopt-java, libjung-free-java, bowtie, bowtie2, libwww-perl, default-jre-headless, samtools, jellyfish, r-base-core, r-cran-cluster, r-bioc-qvalue, rsem, berkeley-express, trimmomatic, transdecoder, parafly, curl, salmon, python3-numpy, ncbi-blast+, python3, r-cran-readr, r-bioc-edger, r-bioc-deseq2, r-bioc-rots, r-cran-fastcluster, liburi-perl, r-cran-ape, r-bioc-ctc, r-cran-gplots, r-bioc-biobase, r-bioc-goseq, r-bioc-tximport, python3-htseq, rna-star, gmap, hisat2, subread, kallisto, python3-hisat2, r-cran-argparse, r-cran-goplot, r-bioc-dexseq
Description:  RNA-Seq De novo Assembly Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.
Package: triplane (1.0.8-3)
Section: universe/games
Homepage: http://triplane.sourceforge.net/
Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.0), libsdl-mixer1.2, libsdl1.2debian (>= 1.2.11), libstdc++6 (>= 5)
Description:  side-scrolling dogfighting game Triplane Classic is a side-scrolling dogfighting game featuring solo missions and multiplayer mode with up to four players. It is a port of the original Triplane Turmoil game for DOS and aims to match the original game exactly so that high scores remain comparable to the original.
Package: triplea (1.9.0.0.7062-2)
Section: universe/games
Homepage: http://www.triplea-game.org/
Depends: default-jre | java8-runtime, java-wrappers, libflamingo-java (>= 7.3), liblaf-plugin-java (>= 7.3), liblaf-widget-java (>= 7.3), libtrident-java (>= 7.3), substance (>= 7.3), substance-flamingo (>= 7.3), libandroid-json-java, libcommons-codec-java, libcommons-io-java, libcommons-logging-java, libcommons-math3-java, libguava-java, libhttpclient-java, libhttpcore-java, libjbcrypt-java, libmail-java, libpostgresql-jdbc-java, libyaml-snake-java
Description:  Turn based strategy game TripleA is a turn based strategy game. TripleA comes with multiple games and over 100 more games can be downloaded from the user community. Supports single player vs AI, hot-seat, Play by Email, and a hosted online lobby.
Package: tripwire (2.4.3.7-4)
Section: universe/utils
Homepage: https://github.com/Tripwire/tripwire-open-source
Depends: default-mta | mail-transport-agent
Description:  file and directory integrity checker Tripwire is a tool that aids system administrators and users in monitoring a designated set of files for any changes.  Used with system files on a regular (e.g., daily) basis, Tripwire can notify system administrators of corrupted or tampered files, so damage control measures can be taken in a timely manner.
Package: trn4 (4.0-test77-14)
Section: multiverse/news
Homepage: http://trn.sourceforge.net/
Depends: debconf (>= 0.5) | debconf-2.0, libc6 (>= 2.34), libtinfo6 (>= 6)
Description:  Threaded USENET news reader, based on rn (4.0 beta test) trn is a threaded news reader with a long history, descended from Larry Wall's rn (part of the second generation of newsreaders).  It has a powerful full screen text mode user interface, where most actions are available at the press of a single key.  It is highly configurable. . This version of trn reads news from a news server via NNTP (the Network News Transfer Protocol).  You must have a news server available - large sites usually provide a site-wide server. . If you install a news server on your system (either containing just local newsgroups or with a partial or full USENET feed) you can configure trn to access it.  In this case you will also need to install an appropriate 'inews' package for local posting. . This is a separate package from trn because trn 4.0 has enough substantial changes in its default behaviour (for instance, the group selector is new in 4.0) that some users prefer to stay with an older version of trn.
Package: trnascan-se-common (2.0.9+ds-1)
Section: multiverse/science
Homepage: http://lowelab.ucsc.edu/tRNAscan-SE
Description:  detection of transfer RNA genes in genomic sequence (common files) tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while giving less than one false positive per 15 gigabases. Two previously described tRNA detection programs are used as fast, first-pass prefilters to identify candidate tRNAs, which are then analyzed by a highly selective tRNA covariance model. This work represents a practical application of RNA covariance models, which are general, probabilistic secondary structure profiles based on stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s. Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes. . This package contains the architecture-independent common files.
Package: trnascan-se (2.0.9+ds-1)
Section: multiverse/science
Homepage: http://lowelab.ucsc.edu/tRNAscan-SE
Depends: libc6 (>= 2.34), perl:any, trnascan-se-common (= 2.0.9+ds-1), infernal
Description:  detection of transfer RNA genes in genomic sequence tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while giving less than one false positive per 15 gigabases. Two previously described tRNA detection programs are used as fast, first-pass prefilters to identify candidate tRNAs, which are then analyzed by a highly selective tRNA covariance model. This work represents a practical application of RNA covariance models, which are general, probabilistic secondary structure profiles based on stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s. Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
Package: trocla (0.2.3-1)
Section: universe/ruby
Homepage: https://github.com/duritong/trocla
Depends: ruby | ruby-interpreter, ruby-bcrypt, ruby-highline, ruby-moneta
Description:  generate and store passwords and certificates on a central server Trocla helps you to generate random passwords and to store them in various formats (plain, MD5, bcrypt) for later retrival. . An example for such an application is puppet and trocla can help you to not store any plaintext or hashed passwords in your manifests by keeping these passwords only on your puppetmaster.
Package: troffcvt (1.04-25ubuntu1)
Section: universe/text
Homepage: http://www.snake.net/software/troffcvt/
Depends: libc6 (>= 2.4), perl, groff (>= 1.17.1-1), debianutils (>= 1.6)
Description:  Converts troff source to HTML, RTF, and plain text Use this package to convert manuals and manpages and other documents written using troff to more manageable formats, such as HTML, RTF, or plain text.
Package: trojan (1.16.0-1build2)
Section: universe/web
Homepage: https://github.com/trojan-gfw/trojan
Depends: libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libmysqlclient21 (>= 8.0.11), libssl3 (>= 3.0.0~~alpha1), libstdc++6 (>= 11)
Description:  fast and lightweight proxy that helps you bypass firewalls Trojan features multiple protocols over TLS to avoid both active/passive detections and ISP QoS limitations. It tries to hide a proxy service behind a normal HTTPS service. Trojan claims to be unidentifiable.
Package: trojita-data (0.7-0ubuntu5)
Section: universe/mail
Homepage: http://trojita.flaska.net/
Description:  Fast Qt IMAP e-mail client (data files). Trojitá is a fast Qt IMAP e-mail client. . This package contains the data files.
Package: trojita-l10n (0.7-0ubuntu5)
Section: universe/localization
Homepage: http://trojita.flaska.net/
Description:  Fast Qt IMAP e-mail client (localization). Trojitá is a fast Qt IMAP e-mail client. . This package contains the localization files.
Package: trojita (0.7-0ubuntu5)
Section: universe/mail
Homepage: http://trojita.flaska.net/
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgpgmepp6 (>= 1.14.0), libmimetic0v5 (>= 0.9.8-6~), libqgpgme7 (>= 1.14.0), libqt5core5a (>= 5.15.1), libqt5dbus5 (>= 5.14.1), libqt5gui5 (>= 5.14.1) | libqt5gui5-gles (>= 5.14.1), libqt5keychain1 (>= 0.7.0), libqt5network5 (>= 5.14.1), libqt5sql5 (>= 5.2), libqt5webkit5 (>= 5.212.0~alpha3), libqt5widgets5 (>= 5.12.2), libstdc++6 (>= 7), zlib1g (>= 1:1.1.4), libqt5sql5-sqlite, trojita-data (= 0.7-0ubuntu5)
Description:  Fast Qt IMAP e-mail client. Trojitá is a fast Qt IMAP e-mail client which:  * Enables you to access your mail anytime, anywhere.  * Does not slow you down. If we can improve the productivity of an e-mail    user, we better do.  * Respects open standards and facilitates modern technologies. We value the    vendor-neutrality that IMAP provides and are committed to be as    interoperable as possible.  * Is efficient — be it at conserving the network bandwidth, keeping memory    use at a reasonable level or not hogging the system's CPU.  * Can be used on many platforms. One UI is not enough for everyone, but our    IMAP core works fine on anything from desktop computers to cell phones and    big ERP systems.  * Plays well with the rest of the ecosystem. We don't like reinventing wheels,    but when the existing wheels quite don't fit the tracks, we're not afraid of    making them work. . Trojitá comes standard with support for:  * Cryptography (OpenPGP and S/MIME)  * Offline IMAP support  * Bandwidth-saving mode  * IMAP over SSH . This package contains the binaries.
Package: trollsched-bin (0.6.0-1)
Section: universe/utils
Homepage: https://github.com/pytroll/pytroll-schedule
Depends: python3-trollsched (= 0.6.0-1), python3:any
Description:  Scheduling satellite passes in Python - scripts The package provides a Python library and tools for reception scheduling of polar orbit weather satellites. This package is part of the PyTroll software suite. . This package provides utilities and executable scripts.
Package: trophy-data (2.0.3-2build1)
Section: universe/games
Homepage: http://trophy.sourceforge.net/
Description:  data files for trophy This package contains the maps, graphics and sounds for the game trophy. It includes the racetracks Downtown, Industrial, Loops, Moon, Rally, Snake, Zigzag and Zurich.
Package: trophy (2.0.3-2build1)
Section: universe/games
Homepage: http://trophy.sourceforge.net/
Depends: trophy-data (= 2.0.3-2build1), libc6 (>= 2.14), libclanapp-1.0v5, libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2)
Description:  2D car racing action game Trophy is a single-player racing game which combines elements from traditional race and action games. Lots of available extras enable features such as shooting, mines, barrels and many others. . This package contains the executable.
Package: tropic-gdm-theme (0.2-0ubuntu2)
Section: universe/x11
Description:  Tropic look - GDM theme The Tropic theme. . This package contains the GDM theme.
Package: tropic-look (0.2-0ubuntu2)
Section: universe/x11
Depends: tropic-theme, tropic-session-splashes, tropic-wallpapers, tropic-gdm-theme
Description:  Tropic look - metapackage The Tropic theme. . This is a meta package.
Package: tropic-session-splashes (0.2-0ubuntu2)
Section: universe/x11
Description:  Tropic look - Session splashes The Tropic theme. . This package contains the Tropic Session splashes.
Package: tropic-theme (0.2-0ubuntu2)
Section: universe/x11
Description:  Tropic look - GTK and Metacity theme The Tropic theme. . This package contains the GTK and Metacity configuration for the Tropic look.
Package: tropic-wallpapers (0.2-0ubuntu2)
Section: universe/x11
Description:  Tropic look - Wallpapers The Tropic theme. . This package contains the Tropic Wallpapers.
Package: trousers-dbg (0.3.15-0.2)
Section: universe/libdevel
Homepage: http://trousers.sourceforge.net/
Depends: trousers (= 0.3.15-0.2), libtspi1 (= 0.3.15-0.2), libtspi-dev (= 0.3.15-0.2)
Description:  open-source TCG Software Stack (debug) TrouSerS is an implementation of the Trusted Computing Group's Software Stack (TSS) specification. You can use TrouSerS to write applications that make use of your TPM hardware. TPM hardware can create, store and use RSA keys securely (without ever being exposed in memory), verify a platform's software state using cryptographic hashes and more. . This package contains the debugging symbols.
Package: trousers (0.3.15-0.2)
Section: universe/utils
Homepage: http://trousers.sourceforge.net/
Depends: libc6 (>= 2.34), libssl3 (>= 3.0.0~~alpha1), lsb-base (>= 3.0-6), tpm-udev
Description:  open-source TCG Software Stack (daemon) TrouSerS is an implementation of the Trusted Computing Group's Software Stack (TSS) specification. You can use TrouSerS to write applications that make use of your TPM hardware. TPM hardware can create, store and use RSA keys securely (without ever being exposed in memory), verify a platform's software state using cryptographic hashes and more. . TrouSerS aims to be compliant with the 1.1b and 1.2 TSS specifications available from the Trusted Computing Group website at <http://www.trustedcomputinggroup.org/>.
Package: trove-api (2:17.0.0-0ubuntu1.1)
Section: universe/net
Homepage: https://opendev.org/openstack/trove
Depends: adduser, lsb-base, q-text-as-data, trove-common (= 2:17.0.0-0ubuntu1.1), debconf (>= 0.5) | debconf-2.0
Description:  Database as a Service for OpenStack - API server Trove is Database as a Service for Openstack. It's designed to run entirely on OpenStack, with the goal of allowing users to quickly and easily utilize the features of a relational database without the burden of handling complex administrative tasks. Cloud users and database administrators can provision and manage multiple database instances as needed. Initially, the service will focus on providing resource isolation at high performance while automating complex administrative tasks including deployment, configuration, patching, backups, restores, and monitoring. Trove is designed to support a single-tenant database within a Nova instance. There is no restrictions on how Nova is configured, since Trove interacts with other OpenStack components purely through the API. . This package provides the Trove API server. The trove-api service provides a RESTful API that supports JSON and XML to provision and manage Trove instances.
Package: trove-common (2:17.0.0-0ubuntu1.1)
Section: universe/net
Homepage: https://opendev.org/openstack/trove
Depends: adduser, dbconfig-common, python3-trove (= 2:17.0.0-0ubuntu1.1), sqlite3, debconf (>= 0.5) | debconf-2.0
Description:  Database as a Service for OpenStack - common files Trove is Database as a Service for Openstack. It's designed to run entirely on OpenStack, with the goal of allowing users to quickly and easily utilize the features of a relational database without the burden of handling complex administrative tasks. Cloud users and database administrators can provision and manage multiple database instances as needed. Initially, the service will focus on providing resource isolation at high performance while automating complex administrative tasks including deployment, configuration, patching, backups, restores, and monitoring. Trove is designed to support a single-tenant database within a Nova instance. There is no restrictions on how Nova is configured, since Trove interacts with other OpenStack components purely through the API. . This package provides the Trove common files.
Package: trove-conductor (2:17.0.0-0ubuntu1.1)
Section: universe/net
Homepage: https://opendev.org/openstack/trove
Depends: adduser, lsb-base, trove-common (= 2:17.0.0-0ubuntu1.1)
Description:  Database as a Service for OpenStack - conductor Trove is Database as a Service for Openstack. It's designed to run entirely on OpenStack, with the goal of allowing users to quickly and easily utilize the features of a relational database without the burden of handling complex administrative tasks. Cloud users and database administrators can provision and manage multiple database instances as needed. Initially, the service will focus on providing resource isolation at high performance while automating complex administrative tasks including deployment, configuration, patching, backups, restores, and monitoring. Trove is designed to support a single-tenant database within a Nova instance. There is no restrictions on how Nova is configured, since Trove interacts with other OpenStack components purely through the API. . This package provides the Trove conductor.