k3ylabs/cosoco-image-dataset huggingface dataset:
Package: pbbamtools (2.0.0+dfsg-2)
Section: universe/science
Homepage: https://pbbam.readthedocs.org/en/latest/index.html
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libhts3 (>= 1.10), libpbbam2.0.0 (= 2.0.0+dfsg-2), libpbcopper2.0.0 (>= 2.0.0+dfsg), libstdc++6 (>= 11)
Description:  processing Pacific Biosciences binary alignment/map files The BAM format is a binary, compressed, record-oriented container format for raw or aligned sequence reads. The associated SAM format is a text representation of the same data. The specifications for BAM/SAM are maintained by the SAM/BAM Format Specification Working Group. . PacBio-produced BAM files are fully compatible with the BAM specification, but makes use of the extensibility mechanisms of the BAM specification to encode PacBio-specific information. . This package provides command-line utilities for working with PacBio BAM files.
Package: pbdagcon (0.3+git20180411.c14c422+dfsg-8)
Section: universe/science
Homepage: https://github.com/PacificBiosciences/pbdagcon
Depends: libblasr5.3.5 (>= 5.3.5+dfsg), libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 12), libpbseq (>= 5.3.5+dfsg-4~)
Description:  sequence consensus using directed acyclic graphs pbdagcon is a tool that implements DAGCon (Directed Acyclic Graph Consensus) which is a sequence consensus algorithm based on using directed acyclic graphs to encode multiple sequence alignment. . It uses the alignment information from blasr to align sequence reads to a "backbone" sequence. Based on the underlying alignment directed acyclic graph (DAG), it will be able to use the new information from the reads to find the discrepancies between the reads and the "backbone" sequences. A dynamic programming process is then applied to the DAG to find the optimum sequence of bases as the consensus. The new consensus can be used as a new backbone sequence to iteratively improve the consensus quality. . While the code is developed for processing PacBio(TM) raw sequence data, the algorithm can be used for general consensus purpose. Currently, it only takes FASTA input. For shorter read sequences, one might need to adjust the blasr alignment parameters to get the alignment string properly. . The code and the underlying graphical data structure have been used for some algorithm development prototyping including phasing reads and pre-assembly.
Package: pbhoney (15.8.24+dfsg-7)
Section: universe/science
Homepage: http://sourceforge.net/projects/pb-jelly
Depends: python3:any, python3-pbsuite-utils (= 15.8.24+dfsg-7), python3-pbbanana (= 15.8.24+dfsg-7), python3-pysam, python3-networkx, python3-h5py, python3-numpy, python3-intervaltree-bio, blasr, samtools
Description:  genomic structural variation discovery PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants. . PBHoney is part of the PBSuite.
Package: pbjelly (15.8.24+dfsg-7)
Section: universe/science
Homepage: http://sourceforge.net/projects/pb-jelly
Depends: python3:any, python3-pbsuite-utils (= 15.8.24+dfsg-7), python3-networkx, blasr
Description:  genome assembly upgrading tool PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. . PBJelly is part of the PBSuite.
Package: pbsim (1.0.3+git20180330.e014b1d+dfsg-2)
Section: universe/science
Homepage: https://github.com/pfaucon/PBSIM-PacBio-Simulator
Depends: libc6 (>= 2.29)
Description:  simulator for PacBio sequencing reads PacBio DNA sequencers produce two types of characteristic reads: CCS (short and low error rate) and CLR (long and high error rate), both of which could be useful for de novo assembly of genomes. PBSIM simulates those PacBio reads from a reference sequence by using either a model-based or sampling-based simulation. Simulated reads are useful, for example, when developing or evaluating sequence assemblers targeted at PacBio data.
Package: pbsuite (15.8.24+dfsg-7)
Section: universe/metapackages
Homepage: http://sourceforge.net/projects/pb-jelly
Depends: pbjelly, pbhoney
Description:  software for Pacific Biosciences sequencing data The PBSuite contains two projects created for analysis of Pacific Biosciences long-read sequencing data.  * PBJelly - genome upgrading tool  * PBHoney - structural variation discovery
Package: pbuilder-scripts (22)
Section: universe/devel
Depends: pbuilder
Description:  Wrapper scripts for pbuilder pbuilder-scripts are a collection of wrapper scripts to make working with many simultaneous pbuilder projects easier.
Package: pbuilder (0.231build1)
Section: universe/devel
Homepage: https://pbuilder-team.pages.debian.net/pbuilder
Depends: debootstrap (>= 1.0.97) | cdebootstrap, dpkg-dev (>= 1.17.0), debconf (>= 0.5) | debconf-2.0
Description:  personal package builder for Debian packages pbuilder constructs a chroot system, and builds a package inside the chroot. It is an ideal system to use to check that a package has correct build-dependencies. It uses apt extensively, and a local mirror, or a fast connection to a Debian mirror is ideal, but not necessary. . "pbuilder create" uses debootstrap to create a chroot image. . "pbuilder update" updates the image to the current state of testing/unstable/whatever . "pbuilder build" takes a *.dsc file and builds a binary in the chroot image. . pdebuild is a wrapper for Debian Developers, to allow running pbuilder just like "debuild", as a normal user.
Package: pbzip2 (1.1.13-1build1)
Section: universe/utils
Homepage: https://launchpad.net/pbzip2/
Depends: libbz2-1.0, libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2)
Description:  parallel bzip2 implementation pbzip2 is a parallel implementation of the bzip2 block-sorting file compressor that uses pthreads and achieves near-linear speedup on SMP machines. The output of this version is fully compatible with bzip2 v1.0.2 (ie: anything compressed with pbzip2 can be decompressed with bzip2).
Package: pcal (4.11.0-3build1)
Section: universe/utils
Depends: libc6 (>= 2.14), libpaper1
Description:  generate Postscript calendars without X "Pcal" is a program to print PostScript calendars for any month and year. By default, it looks for a file in the home directory named "calendar" for entries with leading dates matching dates on the calendar, and prints any following text under the appropriate day.
Package: pcalendar (3.4.1-4)
Section: universe/utils
Homepage: http://linuxorg.sourceforge.net/
Depends: default-jre | java6-runtime, libxerces2-java
Description:  track menstrual cycles and predict fertility periods Periodic Calendar is a GUI application which assists in women menstrual cycles tracking and fertility periods prediction. This information can be used as supportive either for conception or contraception planning. . Periodic Calendar provides support for BBT and sympto-thermal methods which have the highest reliability in fertility periods prediction. User can choose any subset of the features to be used or even fall to the generic calendar method (which if used alone is very unreliable). . Authors of the Periodic Calendar still insist on not being an equal substitute to the fertility planning consultants or doctors. Before using this application please talk to your doctor or read a good book on the subject. . THE PREDICTIONS MADE BY THIS PROGRAM CAN BE NEVER BE CONSIDERED AS FINAL. THE METHODS USED ARE NOT 100% EFFECTIVE FOR ALL WOMEN.
Package: pcapfix (1.1.7-1)
Section: universe/net
Homepage: http://f00l.de/pcapfix
Depends: libc6 (>= 2.34)
Description:  repairs broken pcap and pcapng files libpcap (Packet CAPture) provides a portable framework for low-level network monitoring. Network dumps based on libpcap can be made by tcpdump, wireshark and other tools. Sometimes those dumps can get corrupted by several reasons. Examples of this are a copy from Linux to Windows with a conversion to DOS/ Windows text file line ending (CR-LF) or a transfer over FTP in ASCII mode instead of BINARY mode. . pcapfix tries to repair your broken pcap files, fixing the global header and recovering the packets by searching and guessing the packet headers. . pcapfix will first step through the packets top down until it recognizes a corrupted one by using plausibility checks. After that the tool will brute force further pcap packet headers by reading the file byte by byte. If another proper packet is found, pcapfix restores the data in between by adding a well-formed pcap packet header. . The PCAP Next Generation Dump File Format (or pcapng for short) is an attempt to overcome the limitations of the currently widely used (but limited) libpcap format. Since 1.0.0 version, pcapfix works with pcapng format too.
Package: pcaputils (0.8-1.1)
Section: universe/net
Depends: libc6 (>= 2.34), libjudydebian1, libpcap0.8 (>= 0.9.8)
Description:  specialized libpcap utilities pcaputils includes the following libpcap-based utilities:  - pcapip: filters an input pcap file based on a file containing IP addresses  - pcappick: picks specific frames out of a pcap by number  - pcapuc: prints unique src IPs, dst IPs, or {src, dst} IP pairs witnessed  - pcapdump: a dedicated packet capture utility similar to dumpcap, but with    these features:  * logs packet dump and drop rates  * can run as a daemon  * can dynamically reload its configuration without dropping packets  * can be signalled to immediately rotate its capture output file  * can partition its output based on time intervals (e.g., start of hour or    start of day)  * can strip application data from the trace file (output headers only)  * can sample the packet stream (e.g., only dump every 1 in 10 or 1 in 100    packets)
Package: pcb-common (1:4.2.2-1build1)
Section: universe/electronics
Homepage: http://pcb.geda-project.org/
Depends: m4, tk | wish, tcl | tclsh, pcb-gtk | pcb-lesstif
Description:  printed circuit board (pcb) design program - common files PCB is an interactive printed circuit board editor for the X11 window system. PCB includes a rats nest feature, design rule checking, and can provide industry standard RS-274-X (Gerber), NC drill, and centroid data (X-Y data) output for use in the board fabrication and assembly process. PCB offers high end features such as an autorouter and trace optimizer which can tremendously reduce layout time. . This package contains the common files.
Package: pcb-gtk (1:4.2.2-1build1)
Section: universe/electronics
Homepage: http://pcb.geda-project.org/
Depends: libc6 (>= 2.35), libcairo2 (>= 1.2.4), libdbus-1-3 (>= 1.9.14), libgd3 (>= 2.1.0~alpha~), libgdk-pixbuf-2.0-0 (>= 2.22.0), libgl1, libglib2.0-0 (>= 2.35.9), libglu1-mesa | libglu1, libgtk2.0-0 (>= 2.18.0), libgtkglext1, pcb-common
Description:  printed circuit board (pcb) design program - GTK+ interface PCB is an interactive printed circuit board editor for the X11 window system. PCB includes a rats nest feature, design rule checking, and can provide industry standard RS-274-X (Gerber), NC drill, and centroid data (X-Y data) output for use in the board fabrication and assembly process. PCB offers high end features such as an autorouter and trace optimizer which can tremendously reduce layout time. . This package contains the GTK+ user-interface for pcb.
Package: pcb-lesstif (1:4.2.2-1build1)
Section: universe/electronics
Homepage: http://pcb.geda-project.org/
Depends: libc6 (>= 2.35), libdbus-1-3 (>= 1.9.14), libgd3 (>= 2.1.0~alpha~), libglib2.0-0 (>= 2.28.0), libx11-6, libxinerama1 (>= 2:1.1.4), libxm4 (>= 2.3.4), libxrender1, libxt6, pcb-common
Description:  printed circuit board (pcb) design program - LessTif interface PCB is an interactive printed circuit board editor for the X11 window system. PCB includes a rats nest feature, design rule checking, and can provide industry standard RS-274-X (Gerber), NC drill, and centroid data (X-Y data) output for use in the board fabrication and assembly process. PCB offers high end features such as an autorouter and trace optimizer which can tremendously reduce layout time. . This package contains the LessTif user-interface for pcb.
Package: pcb-rnd-auto (3.0.3-1)
Section: universe/electronics
Homepage: http://repo.hu/projects/pcb-rnd
Depends: libc6 (>= 2.29), libfungw1, pcb-rnd-core (= 3.0.3-1), librnd3, pcb-rnd-lib-io (= 3.0.3-1), pcb-rnd-io-standard (= 3.0.3-1)
Description:  Autoroute and autoplace. Feature plugins for automated component placing and track routing.
Package: pcb-rnd-cloud (3.0.3-1)
Section: universe/electronics
Homepage: http://repo.hu/projects/pcb-rnd
Depends: libc6 (>= 2.14), pcb-rnd-core (= 3.0.3-1), librnd3-cloud
Description:  Networking plugins. 'Cloud' footprint access plugin that integrates edakrill and gedasymbols.org.
Package: pcb-rnd-core (3.0.3-1)
Section: universe/electronics
Homepage: http://repo.hu/projects/pcb-rnd
Depends: libc6 (>= 2.34), librnd3
Description:  pcb-rnd executable with the core functionality Includes the data model, the most common action commands, the native file format and the CLI (batch HID). Does not contain GUI. Can be used in headless mode or batch/scripted mode for automated processing.
Package: pcb-rnd-debug (3.0.3-1)
Section: universe/electronics
Homepage: http://repo.hu/projects/pcb-rnd
Depends: libc6 (>= 2.4), libfungw1, pcb-rnd-core (= 3.0.3-1)
Description:  Debug and diagnostics. Extra action commands to help in debugging and diagnosing problems and bugs.
Package: pcb-rnd-doc (3.0.3-1)
Section: universe/electronics
Homepage: http://repo.hu/projects/pcb-rnd
Description:  Documentation for pcb-rnd User manual (html) and manual pages.
Package: pcb-rnd-export-extra (3.0.3-1)
Section: universe/electronics
Homepage: http://repo.hu/projects/pcb-rnd
Depends: libc6 (>= 2.14), libfungw1, libxml2 (>= 2.7.4), pcb-rnd-core (= 3.0.3-1), pcb-rnd-export (= 3.0.3-1)
Description:  Export formats: special/extra Less commonly used export formats: fidocadj, ipc-356-d, stl, old geda connection list format, direct printing with lpr.
Package: pcb-rnd-export-sim (3.0.3-1)
Section: universe/electronics
Homepage: http://repo.hu/projects/pcb-rnd
Depends: libc6 (>= 2.14), libfungw1, pcb-rnd-core (= 3.0.3-1)
Description:  Export plugins to simulators Export the board in formats that can be used for simulation: openems.
Package: pcb-rnd-export (3.0.3-1)
Section: universe/electronics
Homepage: http://repo.hu/projects/pcb-rnd
Depends: libc6 (>= 2.14), libfungw1, libgd3 (>= 2.1.0~alpha~), pcb-rnd-core (= 3.0.3-1)
Description:  Common export plugins. Export the board in vector graphics (svg, ps, eps), raster graphics (png, jpeg, etc.), gerber, 3d model in openscad, xy for pick and place, BoM, etc.
Package: pcb-rnd-extra (3.0.3-1)
Section: universe/electronics
Homepage: http://repo.hu/projects/pcb-rnd
Depends: libc6 (>= 2.14), libfungw1, pcb-rnd-core (= 3.0.3-1)
Description:  Extra action commands and optional functionality. Align objects in grid, optimize tracks, font editor, combine polygons, renumber subcircuits, apply vendor drill mapping.
Package: pcb-rnd-import-geo (3.0.3-1)
Section: universe/electronics
Homepage: http://repo.hu/projects/pcb-rnd
Depends: libc6 (>= 2.7), libfreetype6 (>= 2.2.1), libfungw1, libgd3 (>= 2.1.0~alpha~), pcb-rnd-core (= 3.0.3-1)
Description:  Geometry import. Plugins for importing pixmaps, fonts and vector graphics.
Package: pcb-rnd-import-net (3.0.3-1)
Section: universe/electronics
Homepage: http://repo.hu/projects/pcb-rnd
Depends: libc6 (>= 2.34), libfungw1, librnd3, pcb-rnd-core (= 3.0.3-1)
Description:  Netlist/schematics import plugins. Import netlist and footprint information from edif, ltspice, mentor graphics, gschem and tinycad.
Package: pcb-rnd-io-alien (3.0.3-1)
Section: universe/electronics
Homepage: http://repo.hu/projects/pcb-rnd
Depends: libc6 (>= 2.34), libfungw1, libxml2 (>= 2.7.4), pcb-rnd-core (= 3.0.3-1), pcb-rnd-lib-io (= 3.0.3-1), pcb-rnd-extra (= 3.0.3-1), librnd3
Description:  File format compatibility with other PCB layout designers. Load and/or save boards in file formats supported by other EDA tools, such as KiCAD, Eagle, protel/autotrax, etc.
Package: pcb-rnd-io-standard (3.0.3-1)
Section: universe/electronics
Homepage: http://repo.hu/projects/pcb-rnd
Depends: libc6 (>= 2.14), libfungw1, pcb-rnd-core (= 3.0.3-1), pcb-rnd-lib-io (= 3.0.3-1)
Description:  Commonly used non-native board and footprint file formats Plugins for tEDAx footprint format and the gEDA/PCB file formats (footprint and board).
Package: pcb-rnd-lib-gui (3.0.3-1)
Section: universe/electronics
Homepage: http://repo.hu/projects/pcb-rnd
Depends: libc6 (>= 2.4), libfungw1, pcb-rnd-core (= 3.0.3-1), librnd3-lib-gui
Description:  Support library for building the GUI. Provides pcb-rnd specific dialog boxes (e.g. fontsel) and top window GUI elements.
Package: pcb-rnd-lib-io (3.0.3-1)
Section: universe/electronics
Homepage: http://repo.hu/projects/pcb-rnd
Depends: libc6 (>= 2.14), pcb-rnd-core (= 3.0.3-1)
Description:  Support library for alien file formats. Provides generic, low level parsers (such as s-expression parser) for I/O plugins that need to deal with alien file formats.
Package: pcb2gcode-dbg (1.1.4-git20120902-1.1build5)
Section: universe/debug
Homepage: http://sourceforge.net/apps/mediawiki/pcb2gcode/
Depends: pcb2gcode (= 1.1.4-git20120902-1.1build5)
Description:  debugging symbols for pcb2gcode pcp2gcode is a command-line tool for isolation routing and drilling PCBs that provides full support for both single- and double-sided boards. It generates G-code (RS-274 code) for engraving and drilling from Gerber and Excellon files. . This package contains the debugging symbols for pcb2gcode.
Package: pcb2gcode (1.1.4-git20120902-1.1build5)
Section: universe/electronics
Homepage: http://sourceforge.net/apps/mediawiki/pcb2gcode/
Depends: gerbv (>= 2.7.0), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.14), libcairo2 (>= 1.2.4), libcairomm-1.0-1v5 (>= 1.12.0), libgcc-s1 (>= 3.0), libglib2.0-0 (>= 2.16.0), libglibmm-2.4-1v5 (>= 2.64.2), libgtkmm-2.4-1v5 (>= 1:2.24.0), libstdc++6 (>= 9)
Description:  command-line tool for engraving PCBs using CNCs pcp2gcode is a command-line tool for isolation routing and drilling PCBs that provides full support for both single- and double-sided boards. It generates G-code (RS-274 code) for engraving and drilling from Gerber and Excellon files.
Package: pcb (1:4.2.2-1build1)
Section: universe/electronics
Homepage: http://pcb.geda-project.org/
Depends: pcb-gtk | pcb-lesstif, pcb-common
Description:  printed circuit board (pcb) design program - metapackage PCB is an interactive printed circuit board editor for the X11 window system. PCB includes a rats nest feature, design rule checking, and can provide industry standard RS-274-X (Gerber), NC drill, and centroid data (X-Y data) output for use in the board fabrication and assembly process. PCB offers high end features such as an autorouter and trace optimizer which can tremendously reduce layout time.
Package: pcc (1.2.0~DEVEL+20200630-2)
Section: universe/devel
Homepage: http://pcc.ludd.ltu.se/
Depends: libc6 (>= 2.14), libpcc-dev
Description:  Portable C Compiler PCC is a small, simple, fast and understandable C99 compiler based on the original Portable C Compiler by S. C. Johnson, written in the late 1970s. Focus on being able to compile and run on a PDP11, even if it may not happen in reality, keeps it lean; abstinence from over-complicated algorithms leads to quick reliable code generation. Even though much of the compiler has been rewritten, some of the basics still remain.
Package: pccts (1.33MR33-6.1)
Section: universe/devel
Depends: libc6 (>= 2.34)
Description:  The Purdue Compiler Construction Tool Set (PCCTS). PCCTS consists of ANother Tool for Language Recognition (ANTLR), a DFA-based Lexical analyzer Generator (DLG) and assorted other utilities designed for the construction of compilers and other language translators. ANTLR is a parser generator which generates recursive descent parsers which are easier to debug than the table driven bottom-up parsers created by YACC. It also provides support for the automatic generation of Abstract Syntax Trees (AST's). Many projects have stopped using PCCTS and moved on to antlr, which is also packaged for Debian.  New projects should probably look there first. However PCCTS will be maintained in Debian as long as there is interest in doing so.
Package: pcf2bdf (1.06-4)
Section: universe/x11
Homepage: https://github.com/ganaware/pcf2bdf
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 5.2)
Description:  convert X11 font from PCF to BDF format Pcf2bdf is a font de-compiler.  It converts an X11 font from Portable Compiled Format (PCF) to Bitmap Distribution Format (BDF). . FONTBOUNDINGBOX in a BDF file is not used by bdftopcf, so pcf2bdf generates irresponsible values.
Package: pchar (1.5-5)
Section: universe/net
Homepage: http://www.kitchenlab.org/www/bmah/Software/pchar/
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 5)
Description:  Characterize the bandwidth, latency and loss on network links pchar is a reimplementation of the pathchar utility, written by Van Jacobson.  Both programs attempt to characterize the bandwidth, latency, and loss of links along an end-to-end path through the Internet.  pchar works in both IPv4 and IPv6 networks.
Package: pci.ids (0.0~2022.01.22-1)
Section: admin
Homepage: https://pci-ids.ucw.cz/
Description:  PCI ID Repository This package contains the pci.ids file, a public repository of all known ID's used in PCI devices: ID's of vendors, devices, subsystems and device classes. It is used in various programs to display full human-readable names instead of cryptic numeric codes.
Package: pciutils (1:3.7.0-6)
Section: admin
Homepage: https://mj.ucw.cz/sw/pciutils/
Depends: libc6 (>= 2.34), libkmod2 (>= 5~), libpci3 (= 1:3.7.0-6)
Description:  PCI utilities This package contains various utilities for inspecting and setting of devices connected to the PCI bus.
Package: pcl-ros-tools (1.7.4-1)
Section: universe/libdevel
Homepage: http://wiki.ros.org/perception_pcl
Depends: libboost-filesystem1.74.0 (>= 1.74.0), libc6 (>= 2.34), libcpp-common0d (>= 0.7.2), libgcc-s1 (>= 3.0), libpcl-io1.12 (>= 1.12.1+dfsg), libpcl-ros-tf1d (>= 1.7.4), librosbag-storage4d (>= 1.15.14+ds), librosconsole3d (>= 1.14.3), libroscpp-serialization0d (>= 0.7.2), libroscpp4d (>= 1.15.14+ds), librostime1d (>= 0.7.2), libstdc++6 (>= 11), libtf1d (>= 1.13.2), libtf2-2d (>= 0.7.5), libtf2-ros1d (>= 0.7.5)
Description:  Bridge between Robot OS library (ROS) and PCL -- Tools PCL (Point Cloud Library) ROS interface stack. PCL-ROS is the preferred  bridge for 3D applications involving n-D Point Clouds and 3D geometry processing in ROS. . This package includes the tools.