k3ylabs/cosoco-image-dataset huggingface dataset:
Package: python3-pairix (0.3.7-5build1)
Section: universe/python
Homepage: https://github.com/4dn-dcic/pairix
Depends: python3 (<< 3.11), python3 (>= 3.10~)
Description:  1D/2D indexing and querying with a pair of genomic coordinates Pairix is a tool for indexing and querying on a block-compressed text file containing pairs of genomic coordinates. . Pairix is a stand-alone C program that was written on top of tabix as a tool for the 4DN-standard pairs file format describing Hi-C data: pairs_format_specification.md . However, Pairix can be used as a generic tool for indexing and querying any bgzipped text file containing genomic coordinates, for either 2D- or 1D- indexing and querying. . For example: given the custom text file below, you want to extract specific lines from the Pairs file further below. An awk command would read the Pairs file from beginning to end. Pairix creates an index and uses it to access the file from a relevant position by taking advantage of bgzf compression, allowing for a fast query on large files.
Package: python3-pairtools-examples (0.3.0-3.2build1)
Section: universe/python
Homepage: https://github.com/mirnylab/pairtools
Description:  Process sequencing data from a Hi-C experiment (examples) Simple and fast command-line framework to process sequencing data from a Hi-C experiment. . Process pair-end sequence alignments and perform the following operations: .   - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end     sequences of Hi-C DNA molecules   - Sort .pairs files for downstream analyses   - Detect, tag and remove PCR/optical duplicates   - Generate extensive statistics of Hi-C datasets   - Select Hi-C pairs given flexibly defined criteria   - Restore .sam alignments from Hi-C pairs . This package contains some examples
Package: python3-pairtools (0.3.0-3.2build1)
Section: universe/python
Homepage: https://github.com/mirnylab/pairtools
Depends: libc6 (>= 2.14), cython3, python3 (<< 3.11), python3 (>= 3.10~), python3-click, python3-nose, python3-numpy (>= 1:1.20.0), python3-numpy-abi9, python3:any
Description:  Framework to process sequencing data from a Hi-C experiment Simple and fast command-line framework to process sequencing data from a Hi-C experiment. . Process pair-end sequence alignments and perform the following operations: .   - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end     sequences of Hi-C DNA molecules   - Sort .pairs files for downstream analyses   - Detect, tag and remove PCR/optical duplicates   - Generate extensive statistics of Hi-C datasets   - Select Hi-C pairs given flexibly defined criteria   - Restore .sam alignments from Hi-C pairs
Package: python3-palettable (3.3.0-2)
Section: universe/python
Homepage: https://github.com/jiffyclub/palettable
Depends: python3-pkg-resources, python3:any
Description:  library of color palettes for Python (Python 3) Palettable (formerly brewer2mpl) is a library of color palettes for Python. It's written in pure Python with no dependencies, but it can supply color maps for matplotlib. You can use Palettable to customize matplotlib plots or supply colors for a web application. . This package installs the library for Python 3.
Package: python3-pallets-sphinx-themes (2.0.1-1)
Section: universe/python
Homepage: https://github.com/pallets/pallets-sphinx-themes
Depends: python3-packaging, python3-sphinx, python3:any, python3-importlib-metadata
Description:  Sphinx themes for Pallets and related projects Available themes:  * flask  * jinja  * werkzeug  * click . This package contains the Python 3.x module.
Package: python3-pam (0.4.2-13.4build4)
Section: python
Depends: python3 (<< 3.11), python3 (>= 3.10~), libc6 (>= 2.4), libpam0g (>= 0.99.7.1)
Description:  Python interface to the PAM library This module makes the PAM (Pluggable Authentication Modules) functions available in Python 3. With this module you can write Python 3 applications that implement authentication services using PAM.
Package: python3-pamela (1.0.0-2)
Section: universe/python
Homepage: https://github.com/minrk/pamela
Depends: python3:any
Description:  PAM interface using ctypes Yet another Python wrapper for PAM . There seems to be a glut of Python wrappers for PAM that have since been abandoned.  This repo merges two separate efforts: . - [gnosek/python-pam](https://github.com/gnosek/python-pam)   - adds wrappers for a few more calls, e.g. opening sessions   - raises PamError on failure instead of returning False, with     informative error messages - [simplepam](https://github.com/leonnnn/python3-simplepam)   - adds Python 3 support   - resets credentials after authentication, apparently for kerberos     users
Package: python3-pampy (1.8.4-2)
Section: universe/python
Homepage: https://pypi.python.org/pypi/pam
Depends: python3:any
Description:  Python module for simple PAM authentications (Python 3) Provide an authenticate() function that will allow the caller to authenticate a user against the Pluggable Authentication Modules (PAM) on the system. . The module pam.py is a single file, implemented using ctypes, so no compilation is necessary. This package provides the pam.py module for Python 3.
Package: python3-pamqp (3.1.0-1)
Section: universe/python
Homepage: https://github.com/gmr/pamqp/
Depends: python3:any
Description:  RabbitMQ Focused AMQP low-level library (Python3 version) pamqp is a low level AMQP 0-9-1 frame encoding and decoding library for Python. It is not a end-user client library for talking to RabbitMQ but rather is used by client libraries for marshaling and unmarshaling AMQP frames. . AMQP class/method command class mappings can be found in the pamqp.specification module while actual frame encoding and encoding should be run through the pamqp.frame module. . This package contains the Python 3 version of the library.
Package: python3-pandas-lib (1.3.5+dfsg-3)
Section: universe/python
Homepage: https://pandas.pydata.org/
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), python3 (<< 3.11), python3 (>= 3.10~), python3-numpy (>= 1:1.20.0), python3-numpy-abi9
Description:  low-level implementations and bindings for pandas This is a low-level package for python3-pandas providing architecture-dependent extensions. . Users should not need to install it directly.
Package: python3-pandas (1.3.5+dfsg-3)
Section: universe/python
Homepage: https://pandas.pydata.org/
Depends: python3-dateutil, python3-numpy, python3-tz, python3:any, python3-pandas-lib (>= 1.3.5+dfsg), python3-pkg-resources, python3-six
Description:  data structures for "relational" or "labeled" data pandas is a Python package providing fast, flexible, and expressive data structures designed to make working with "relational" or "labeled" data both easy and intuitive. It aims to be the fundamental high-level building block for doing practical, real world data analysis in Python. pandas is well suited for many different kinds of data: .  - Tabular data with heterogeneously-typed columns, as in an SQL    table or Excel spreadsheet  - Ordered and unordered (not necessarily fixed-frequency) time    series data.  - Arbitrary matrix data (homogeneously typed or heterogeneous) with    row and column labels  - Any other form of observational / statistical data sets. The data    actually need not be labeled at all to be placed into a pandas    data structure . This package contains the Python 3 version.
Package: python3-pandocfilters (1.5.0-1)
Section: universe/python
Homepage: https://github.com/jgm/pandocfilters
Depends: python3:any
Description:  python3 bindings for Pandoc's filters Pandoc is a powerful utility to transform various input formats into a wide range of output formats. To alter the exported output document, Pandoc allows the usage of filters, which are pipes that read a JSON serialization of the Pandoc AST from stdin, transform it in some way, and write it to stdout. It allows therefore to alter the processing of Pandoc's supported input formats, for instance one can add new syntax elements to markdown, etc.
Package: python3-panko (1:10.0.0-0ubuntu1)
Section: universe/python
Homepage: https://opendev.org/openstack/panko
Depends: panko-common (= 1:10.0.0-0ubuntu1), python3-alembic (>= 0.7.6), python3-dateutil (>= 2.4.2), python3-debtcollector (>= 1.2.0), python3-elasticsearch, python3-keystonemiddleware (>= 5.1.0), python3-lxml (>= 2.3), python3-oslo.config (>= 1:3.9.0), python3-oslo.db (>= 4.1.0), python3-oslo.i18n (>= 2.1.0), python3-oslo.log (>= 4.3.0), python3-oslo.middleware (>= 3.10.0), python3-oslo.policy (>= 3.6.0), python3-oslo.reports (>= 0.6.0), python3-oslo.serialization (>= 2.25.0), python3-oslo.utils (>= 3.5.0), python3-paste, python3-pastedeploy (>= 1.5.0), python3-pbr (>= 2.0.0), python3-pecan (>= 1.0.0), python3-pymongo, python3-sqlalchemy (>= 1.0.10), python3-stevedore (>= 1:1.9.0), python3-tenacity (>= 3.1.0), python3-webob (>= 1:1.2.3), python3-wsme (>= 0.8), python3-yaml (>= 3.1.0), python3-oslo.context, python3:any
Description:  Event storage dispatcher for Ceilometer (Python 3) Event storage dispatcher for Ceilometer. . This package installs the library for Python 3
Package: python3-pankoclient (1.2.0-0ubuntu1)
Section: universe/python
Homepage: https://opendev.org/openstack/python-pankoclient
Depends: python3-keystoneauth1 (>= 3.4.0), python3-osc-lib (>= 1.8.0), python3-oslo.i18n (>= 2.1.0), python3-oslo.serialization (>= 1.10.0), python3-oslo.utils (>= 3.18.0), python3-osprofiler (>= 1.4.0), python3-pbr (>= 1.8), python3-requests (>= 2.14.2), python3-six (>= 1.9.0), python3:any
Description:  Python bindings to the OpenStack Panko API - Python 3.x Panko is an event storage service that provides the ability to store and query event data generated by Ceilometer with potentially other sources. . This package contains the client library for Panko built on the Panko API. It provides a Python API (the pankoclient module) and a OSC (the openstackclient CLI) command-line tool (openstack event). . This package provides the Python 3.x module.
Package: python3-panoramisk (1.4-2)
Section: universe/python
Homepage: http://panoramisk.readthedocs.org/
Depends: python3:any
Description:  asyncio based library to play with asterisk (Python 3 library) Panoramisk is a library based on python’s AsyncIO to play with Asterisk’s manager. It uses the TCP manager server to listen to events and send actions. . This is the Python 3 library package.
Package: python3-pantalaimon (0.10.4-1)
Section: universe/python
Homepage: https://github.com/matrix-org/pantalaimon
Depends: python3-prompt-toolkit (>= 2), python3-aiohttp (<< 4.0), python3-appdirs, python3-attr, python3-cachetools, python3-click, python3-janus, python3-keyring, python3-logbook, python3-matrix-nio (<< 0.20), python3-peewee, python3:any
Description:  E2EE aware proxy daemon for matrix clients - python3 module Pantalaimon is an end-to-end encryption aware Matrix reverse proxy daemon. Pantalaimon acts as a good man in the middle that handles the encryption for you. . Messages are transparently encrypted and decrypted for clients inside of pantalaimon. . This package contains the pantalaimon Python 3.x module.
Package: python3-panwid (0.3.4-1)
Section: universe/python
Homepage: https://github.com/tonycpsu/panwid
Depends: python3-orderedattrdict, python3-raccoon, python3-six, python3-urwid, python3-urwid-utils, python3:any
Description:  Useful widgets for urwid Collection of widgets for urwid. . Currently consists of:  - dropdown menu widget with autocomplete support  - widget for displaying tabular data  - listbox with an optional scrollbar
Package: python3-paq (0.1.1+git20170722.9c5d493-4build1)
Section: universe/python
Homepage: https://github.com/observerss/paq
Depends: cython3, python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.14), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 5.2)
Description:  Python library for the paq9a compression algorithm This Python library supports compression and decompression using the paq9a algorithm.
Package: python3-parallax (1.0.6-3)
Section: python
Homepage: https://github.com/krig/parallax/
Depends: openssh-client, python3:any
Description:  Execute commands and copy files over SSH Parallax SSH provides an interface to executing commands on multiple nodes at once using SSH. It also provides commands for sending and receiving files to multiple nodes using SCP.
Package: python3-parallel (0.2.2-4)
Section: universe/python
Depends: python3:any
Description:  pyparallel - module encapsulating access for the parallel port This module capsulates the access for the parallel port. It provides backends for standard Python running on Windows, Linux, BSD (possibly any POSIX compliant system). The module named "parallel" automatically selects the appropriate backend.
Package: python3-param (1.9.3-2)
Section: universe/python
Homepage: https://github.com/holoviz/param
Depends: python3:any
Description:  Make your Python code clearer and more reliable by declaring Parameters Param is a library providing Parameters: Python attributes extended to have features such as type and range checking, dynamically generated values, documentation strings, default values, etc., each of which is inherited from parent classes if not specified in a subclass.
Package: python3-parameterized (0.8.1-3)
Section: universe/python
Homepage: https://github.com/wolever/parameterized
Depends: python3:any
Description:  parameterized testing for Python 3 The parameterized module provides a set of decorators for parameterized testing in Python. It supports nose, nose2, pytest and unittest. . The @parameterized decorator can be used for class methods, and standalone functions, whilst the @parameterized.expand should be used for classes deriving from unittest.TestCase. . This package provides the modules for Python 3.
Package: python3-paramiko (2.9.3-0ubuntu1.2)
Section: python
Homepage: https://github.com/paramiko/paramiko/
Depends: python3-bcrypt (>= 3.1.3), python3-cryptography (>= 2.5), python3-nacl (>= 1.0.1), python3-six, python3:any
Description:  Make ssh v2 connections (Python 3) "Paramiko" is a combination of the Esperanto words for "paranoid" and "friend". It's a module for Python 2.7/3.4+ that implements the SSH2 protocol for secure (encrypted and authenticated) connections to remote machines. Unlike SSL (aka TLS), SSH2 protocol does not require hierarchical certificates signed by a powerful central authority. You may know SSH2 as the protocol that replaced Telnet and rsh for secure access to remote shells, but the protocol also includes the ability to open arbitrary channels to remote services across the encrypted tunnel (this is how SFTP works, for example). . This is the Python 3 version of the package.
Package: python3-parasail (1.2.4-3)
Section: universe/python
Homepage: https://github.com/jeffdaily/parasail-python
Depends: python3-numpy, python3:any, python3-wheel, libparasail-dev
Description:  Python3 bindings for the parasail C library This package provides the Python3 bindings for parasail. Parasail is a SIMD C library containing implementations of the Smith-Waterman, Needleman-Wunsch, and various semi-global pairwise sequence alignment algorithm.
Package: python3-paraview (5.10.0~rc1-1build3)
Section: universe/python
Homepage: https://www.paraview.org/
Depends: paraview (= 5.10.0~rc1-1build3), python3 (>= 3~), python3:any, libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libpython3.10 (>= 3.10.0), libstdc++6 (>= 11)
Description:  Parallel Visualization Application. python-support ParaView is an open-source, multi-platform application designed to visualize data sets of size varying from small to very large. The goals of the ParaView project include the following: .     * Develop an open-source, multi-platform visualization application.     * Support distributed computation models to process large data sets.     * Create an open, flexible, and intuitive user interface.     * Develop an extensible architecture based on open standards. . ParaView runs on distributed and shared memory parallel as well as single processor systems and has been successfully tested on Windows, Mac OS X, Linux and various Unix workstations, clusters and supercomputers. Under the hood, ParaView uses the Visualization Toolkit as the data processing and rendering engine and has a user interface written using Qt. Enables python support.
Package: python3-parfive (1.5.1-1)
Section: universe/python
Homepage: https://parfive.readthedocs.io/
Depends: python3-aiohttp, python3-tqdm, python3:any
Description:  HTTP and FTP parallel file downloader for Python Parfive is a small library for downloading files, its objective is to provide a simple API for queuing files for download and then providing excellent feedback to the user about the in progress downloads. It also aims to provide a clear interface for inspecting any failed downloads. . Parfive supports downloading files over either HTTP or FTP using aiohttp and aioftp.
Package: python3-parse-type (0.5.6-1)
Section: universe/python
Homepage: https://github.com/jenisys/parse_type/
Depends: python3-parse (>= 1.19.0), python3-six (>= 1.11), python3:any
Description:  BDD plugin for py.test. Extends the parse module (opposite of string.format()) with the a number of additional features. . This package contains the python 3 version.
Package: python3-parse (1.19.0-0.2)
Section: universe/python
Homepage: https://github.com/r1chardj0n3s/parse
Depends: python3:any
Description:  Parse provides the reverse function for format(), Python3 package Parse strings using a specification based on the Python format() syntax. .    ``parse()`` is the opposite of ``format()`` . The module is set up to only export ``parse()``, ``search()`` and ``findall()`` when ``import *`` is used: . >>> from parse import * . From there it's a simple thing to parse a string: . >>> parse("It's {}, I love it!", "It's spam, I love it!") <Result ('spam',) {}> >>> _[0] 'spam' . Or to search a string for some pattern: . >>> search('Age: {:d}\n', 'Name: Rufus\nAge: 42\nColor: red\n') <Result (42,) {}> . This is the Python 3 package
Package: python3-parsedatetime (2.6-2)
Section: universe/python
Homepage: https://github.com/bear/parsedatetime
Depends: python3:any
Description:  Python 3 module to parse human-readable date/time expressions parsedatetime is able to parse, for example, the following: .   * August 25th, 2008   * 25 Aug 2008   * Aug 25 5pm   * 5pm August 25   * next saturday   * tomorrow   * next thursday at 4pm   * at 4pm   * eod   * tomorrow eod   * eod tuesday   * eoy   * eom   * in 5 minutes   * 5 minutes from now   * 5 hours before now   * 2 hours before noon   * 2 days from tomorrow . This package provides the modules for Python 3.
Package: python3-parsel (1.6.0+dfsg-3)
Section: universe/python
Homepage: https://github.com/scrapy/parsel
Depends: python3-cssselect, python3-lxml, python3-six (>= 1.6.0), python3-w3lib (>= 1.19.0), python3:any
Description:  Python 3 library to extract HTML/XML data using XPath/CSS selectors Parsel is a Python library to extract data from HTML and XML using XPath and CSS selectors . This module is used to, for example:  - Extract text using CSS or XPath selectors  - Regular expression helper methods . This is the Python 3 version of the package.
Package: python3-parsley (1.3-2)
Section: universe/python
Homepage: https://github.com/washort/parsley
Depends: python3:any
Description:  Pattern-Matching Language Based on OMeta and Python Parsley, like pyparsing and ZestyParser, uses the PEG algorithm, so each expression in the grammar rules works like a Python expression. In particular, alternatives are evaluated in order, unlike table-driven parsers such as yacc, bison or PLY. . Parsley is an implementation of OMeta, an object-oriented pattern-matching language developed by Alessandro Warth. . This package installs the library for Python 3.
Package: python3-parso (0.8.1-1)
Section: universe/python
Homepage: https://github.com/davidhalter/parso
Depends: python3:any
Description:  Python parser that supports error recovery - Python 3.X Parso is a Python parser that supports error recovery and round-trip parsing for different Python versions (in multiple Python versions). Parso is also able to list multiple syntax errors in your Python file. . Parso has been battle-tested by jedi. It was pulled out of jedi to be useful for other projects as well. . Parso consists of a small API to parse Python and analyse the syntax tree. . A simple example: .  >>> import parso  >>> module = parso.parse('hello + 1', version="3.6")  >>> expr = module.children[0]  >>> expr  PythonNode(arith_expr, [<Name: hello@1,0>, <Operator: +>, <Number: 1>])  >>> print(expr.get_code())  hello + 1  >>> name = expr.children[0]  >>> name  <Name: hello@1,0>  >>> name.end_pos  (1, 5)  >>> expr.end_pos  (1, 9) . To list multiple issues: .  >>> grammar = parso.load_grammar()  >>> module = grammar.parse('foo +\nbar\ncontinue')  >>> error1, error2 = grammar.iter_errors(module)  >>> error1.message  'SyntaxError: invalid syntax'  >>> error2.message  "SyntaxError: 'continue' not properly in loop"
Package: python3-partd (1.2.0-1)
Section: universe/python
Homepage: https://github.com/dask/partd/
Depends: python3-locket, python3-toolz, python3:any
Description:  Appendable key-value storage for Python 3 Key-value byte store with appendable values .  - Partd stores key-value pairs.  - Values are raw bytes.  - Appends on old values. . Partd excels at shuffling operations. . This contains the Python 3 version.
Package: python3-parted (3.11.7-1build1)
Section: universe/python
Homepage: https://github.com/dcantrell/pyparted
Depends: python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.8), libparted2 (>= 3.1)
Description:  Python 3 interface for libparted pyparted is a set of Python modules that provide Python programmers an interface to libparted (http://www.gnu.org/software/parted), the GNU parted library for disk partitioning and file system manipulation. . This package contains Python 3 extension itself.
Package: python3-passlib (1.7.4-1)
Section: python
Homepage: https://passlib.readthedocs.io
Depends: python3:any
Description:  comprehensive password hashing framework Password hashing library for Python 3, which provides cross-platform implementations of over 20 password hashing algorithms, as well as a framework for managing existing password hashes. It's designed to be useful for a wide range of tasks; from verifying a hash found in /etc/shadow, to providing full-strength password hashing for multi-user applications.
Package: python3-paste (3.5.0+dfsg1-1)
Section: python
Homepage: https://pythonpaste.readthedocs.io/
Depends: python3-pkg-resources, python3-tempita, python3-six (>= 1.4.0), python3:any
Description:  tools for using a Web Server Gateway Interface stack - Python 3.x Python Paste brings consistency to Python web development and web application installation, providing tools for both developers and system administrators. . Paste for Administrators:  * Easily install, run, and configure multiple Paste-enabled web    applications at once, and integrate them into your website how    you want (SCGI, FCGI, AJP, WSGI)  * Manage and install web applications system-wide for easy maintenance . Paste for Web Developers:  * Increase your web application's audience  * Provide starter templates and custom commands for using your web framework  * Keep your development and deployment straightened out, and your automated    testing streamlined  * Attention payed to the full development cycle -- starting projects,    converting old projects, updating and deploying projects -- using a set of    complementary packages and tools . This is the Python3 version of the package.