k3ylabs/cosoco-image-dataset huggingface dataset:
Package: python3-bidict (0.21.3-1)
Section: universe/python
Homepage: https://bidict.readthedocs.io
Depends: python3:any, libjs-sphinxdoc (>= 2.4.3-5~)
Description:  Bidirectional map data structures and related functionality Features:  - has carefully designed APIs for safety, simplicity, flexibility,    and ergonomics  - has extensive test coverage (including property-based tests and benchmarks)    run continuously on all supported Python versions and OSes  - integrates natively with Python’s collections interfaces  - is implemented in concise, well-factored, well-documented pure Python that    leverages a number of advanced language features
Package: python3-bids-validator (1.9.2-1)
Section: universe/python
Homepage: https://github.com/bids-standard/bids-validator
Depends: python3:any
Description:  validator for the Brain Imaging Data Structure (BIDS) datasets This package contains a Python module to validate BIDS (Brain Imaging Data Structure) datasets.  It does not contain original bids-validator command line tool (written in JS).
Package: python3-billiard (3.6.4.0-2)
Section: universe/python
Homepage: https://github.com/celery/billiard
Depends: python3:any
Description:  Multiprocessing Pool Extensions for Python (Python3 version) This package contains extensions to the multiprocessing Pool. It extends the multiprocessing.Pool with a billiard.pool.DynamicPool that can grow in size. . This package contains the Python 3 version of the library.
Package: python3-binary-memcached (0.30.0+dfsg1-2)
Section: universe/python
Homepage: https://github.com/jaysonsantos/python-binary-memcached
Depends: python3-six, python3-uhashring, python3:any
Description:  pure python module to access memcached via its binary protocol - Python 3.x This library contains a pure Python module (thread safe) to access memcached via it's binary with SASL auth support. . The main purpose of this module it to be able to communicate with memcached using binary protocol and support authentication, so it can work with Heroku for example. . This package contains the Python 3.x module.
Package: python3-binaryornot (0.4.4+dfsg-4)
Section: universe/python
Homepage: https://github.com/audreyr/binaryornot
Depends: python3-chardet, python3:any
Description:  check if a file is binary or text (Python 3 module) This Python package provides a function to check if a file is a text file or a binary file. It uses the same heuristic as file(1) by looking at the first 1024 bytes of the file and checks that all characters are printable. . This package contains the Python 3 module.
Package: python3-binoculars (0.0.10-1.1)
Section: universe/python
Homepage: https://github.com/picca/binoculars
Depends: gir1.2-hkl-5.0, python3-vtk7, python3-numpy, python3-gi, python3-h5py-serial, python3-matplotlib, python3-pyfai, python3-pymca5, python3-pyqt5, python3-xrayutilities, python3:any
Description:  Surface X-ray diffraction 2D detector data reduction - Python3 BINoculars is a tool for data reduction and analysis of large sets of surface diffraction data that have been acquired with a two-dimensional X-ray detector. The intensity of each pixel of a two-dimensional detector is projected onto a three-dimensional grid in reciprocal-lattice coordinates using a binning algorithm. This allows for fast acquisition and processing of high-resolution data sets and results in a significant reduction of the size of the data set. The subsequent analysis then proceeds in reciprocal space. It has evolved from the specific needs of the ID03 beamline at the ESRF, but it has a modular design and can be easily adjusted and extended to work with data from other beamlines or from other measurement techniques. . This is the Python 3 version of the package.
Package: python3-binwalk (2.3.3+dfsg1-2)
Section: universe/devel
Homepage: https://github.com/ReFirmLabs/binwalk
Depends: libmagic1, python3:any
Description:  Python3 library for analyzing binary blobs and executable code Binwalk is a tool for searching a given binary image for embedded files and executable code. Specifically, it is designed for identifying files and code embedded inside of firmware images. Binwalk uses the libmagic library, so it is compatible with magic signatures created for the Unix file utility. . Binwalk also includes a custom magic signature file which contains improved signatures for files that are commonly found in firmware images such as compressed/archived files, firmware headers, Linux kernels, bootloaders, filesystems, etc. . This is the Python 3 version of the package.
Package: python3-bioblend (0.16.0-1)
Section: universe/python
Homepage: https://github.com/galaxyproject/bioblend
Depends: python3-boto, python3-requests, python3-requests-toolbelt, python3-yaml, python3:any
Description:  CloudMan and Galaxy API library (Python 3) BioBlend is a Python library for interacting with CloudMan and Galaxy's API. BioBlend is supported and tested on:  · Python 2.6, 2.7, 3.3 and 3.4  · Galaxy release_14.02 and later. Conceptually, it makes it possible to script and automate  the  process of cloud infrastructure provisioning and scaling via CloudMan, and run‐ ning of analyses via Galaxy. In reality, it makes  it  possible  to  do things like this:  · Create  a CloudMan compute cluster, via an API and directly from your    local machine:  · Reconnect to an existing CloudMan instance and manipulate it  · Interact with Galaxy via a straightforward API . Although this library allows you to blend these two services into  a cohesive  unit,  the  library itself can be used with either service irrespective of the other. For example,  you  can  use  it  to  just manipulate  CloudMan  clusters or to script the interactions with an instance of Galaxy running on your laptop. . This package installs the library for Python 3.
Package: python3-biom-format (2.1.10-3ubuntu1)
Section: universe/python
Homepage: https://biom-format.org/
Depends: python3-h5py, python3-numpy (>= 1:1.20.0), python3-numpy-abi9, cython3, python3 (<< 3.11), python3 (>= 3.10~), python3-click, python3-h5py-serial, python3-pandas, python3-scipy, python3:any, libc6 (>= 2.4)
Description:  Biological Observation Matrix (BIOM) format (Python 3) The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium candidate project. . The BIOM format is designed for general use in broad areas of comparative -omics. For example, in marker-gene surveys, the primary use of this format is to represent OTU tables: the observations in this case are OTUs and the matrix contains counts corresponding to the number of times each OTU is observed in each sample. With respect to metagenome data, this format would be used to represent metagenome tables: the observations in this case might correspond to SEED subsystems, and the matrix would contain counts corresponding to the number of times each subsystem is observed in each metagenome. Similarly, with respect to genome data, this format may be used to represent a set of genomes: the observations in this case again might correspond to SEED subsystems, and the counts would correspond to the number of times each subsystem is observed in each genome. . This package provides the BIOM format library for the Python 3 interpreter.
Package: python3-biomaj3-cli (3.1.11-1)
Section: universe/python
Homepage: https://github.com/genouest/biomaj-cli
Depends: python3-biomaj3-core, python3-requests, python3:any
Description:  BioMAJ client BioMAJ downloads remote data banks, checks their status and applies transformation workflows, with consistent state, to provide ready-to-use data for biologists and bioinformaticians. For example, it can transform original FASTA files into BLAST indexes. It is very flexible and its post-processing facilities can be extended very easily. . BioMAJ3 is a rewrite of BioMAJ v1.x, see online documentation for migration. . This package contains the client to execute BioMAJ3 or communicate with the BioMAJ daemon process (python3-biomaj3-daemon) in case of microservice config.
Package: python3-biomaj3-core (3.0.26-1)
Section: universe/python
Homepage: https://github.com/genouest/biomaj-core
Depends: python3-elasticsearch, python3-future, python3-requests, python3:any
Description:  BioMAJ core library - Python 3.X BioMAJ downloads remote data banks, checks their status and applies transformation workflows, with consistent state, to provide ready-to-use data for biologists and bioinformaticians. For example, it can transform original FASTA files into BLAST indexes. It is very flexible and its post-processing facilities can be extended very easily. . BioMAJ3 is a rewrite of BioMAJ v1.x, see online documentation for migration. . This package containers the core library for BioMAJ
Package: python3-biomaj3-daemon (3.0.22-2)
Section: universe/python
Homepage: https://github.com/genouest/biomaj-daemon
Depends: python3-biomaj3, python3-biomaj3-core, python3-biomaj3-user, python3-biomaj3-zipkin, python3-consul, python3-flask, python3-flask-cors, python3-prometheus-client, python3-redis, python3-requests, python3-yaml, python3:any
Description:  BioMAJ daemon library BioMAJ downloads remote data banks, checks their status and applies transformation workflows, with consistent state, to provide ready-to-use data for biologists and bioinformaticians. For example, it can transform original FASTA files into BLAST indexes. It is very flexible and its post-processing facilities can be extended very easily. . BioMAJ3 is a rewrite of BioMAJ v1.x, see online documentation for migration. . This package contains the library and microservice to manage daemon and CLI in BioMAJ3
Package: python3-biomaj3-download (3.2.6-1)
Section: universe/python
Homepage: https://github.com/genouest/biomaj-download
Depends: python3-bcrypt, python3-biomaj3-core (>= 3.0.26), python3-biomaj3-zipkin, python3-consul, python3-flask, python3-ftputil, python3-humanfriendly, python3-irodsclient, python3-pika, python3-prometheus-client, python3-protobuf, python3-pycurl, python3-redis, python3-requests, python3-simpleeval, python3-tenacity, python3-yaml, python3:any
Description:  BioMAJ download management library BioMAJ downloads remote data banks, checks their status and applies transformation workflows, with consistent state, to provide ready-to-use data for biologists and bioinformaticians. For example, it can transform original FASTA files into BLAST indexes. It is very flexible and its post-processing facilities can be extended very easily. . BioMAJ3 is a rewrite of BioMAJ v1.x, see online documentation for migration. . This package contains the library and microservice to manage downloads in BioMAJ3
Package: python3-biomaj3-process (3.0.16-2)
Section: universe/python
Homepage: https://github.com/genouest/biomaj-process
Depends: python3-biomaj3-core, python3-biomaj3-zipkin, python3-consul, python3-flask, python3-pika, python3-prometheus-client, python3-protobuf, python3-redis, python3-requests, python3-yaml, python3:any
Description:  BioMAJ process management library BioMAJ downloads remote data banks, checks their status and applies transformation workflows, with consistent state, to provide ready-to-use data for biologists and bioinformaticians. For example, it can transform original FASTA files into BLAST indexes. It is very flexible and its post-processing facilities can be extended very easily. . BioMAJ3 is a rewrite of BioMAJ v1.x, see online documentation for migration. . This package contains the library and microservice to manage processes in BioMAJ3
Package: python3-biomaj3-user (3.0.10-1)
Section: universe/python
Homepage: https://github.com/genouest/biomaj-user
Depends: python3-biomaj3-core, python3-consul, python3-flask, python3-ldap3, python3-pymongo, python3-tabulate, python3-yaml, python3:any
Description:  BioMAJ user management library BioMAJ downloads remote data banks, checks their status and applies transformation workflows, with consistent state, to provide ready-to-use data for biologists and bioinformaticians. For example, it can transform original FASTA files into BLAST indexes. It is very flexible and its post-processing facilities can be extended very easily. . BioMAJ3 is a rewrite of BioMAJ v1.x, see online documentation for migration. . This package contains the library and microservice to manage users in BioMAJ3
Package: python3-biomaj3-zipkin (0.2.2-3)
Section: universe/python
Homepage: https://github.com/genouest/biomaj-zipkin
Depends: python3-py-zipkin, python3-requests, python3:any
Description:  BioMAJ zipkin log tracing library This library adds zipkin integration to BioMAJ to track micro services communications and follow workflow progress and timing.
Package: python3-biomaj3 (3.1.18-2)
Section: universe/python
Homepage: https://github.com/genouest/biomaj
Depends: python3-biomaj3-cli, python3-biomaj3-core, python3-biomaj3-download, python3-biomaj3-process, python3-biomaj3-user, python3-elasticsearch, python3-future, python3-pycurl, python3-pymongo, python3-redis, python3-requests, python3-tabulate, python3-yapsy, python3:any, unzip
Description:  BioMAJ workflow management library BioMAJ downloads remote data banks, checks their status and applies transformation workflows, with consistent state, to provide ready-to-use data for biologists and bioinformaticians. For example, it can transform original FASTA files into BLAST indexes. It is very flexible and its post-processing facilities can be extended very easily. . BioMAJ3 is a rewrite of BioMAJ v1.x, see online documentation for migration. . This package contains the library to manage the workflow update in BioMAJ3, it is managed via python3-biomaj3-daemon (for microservices remote operations) or biomaj3-cli (local or remote) packages
Package: python3-biopython-sql (1.79+dfsg-3)
Section: universe/python
Homepage: https://biopython.org
Depends: python3:any, python3-biopython
Description:  Biopython support for the BioSQL database schema (Python 3) This is the Biopython interface to a BioSQL database (see www.biosql.org for details). BioPerl, BioJava and BioRuby also provide their own BioSQL interfaces onto the same shared SQL schema.
Package: python3-biopython (1.79+dfsg-3)
Section: universe/python
Homepage: https://biopython.org
Depends: python3-numpy (>= 1:1.20.0), python3-numpy-abi9, python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.14), python3-renderpm, python3-reportlab, w3c-sgml-lib
Description:  Python3 library for bioinformatics The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. . It is a distributed collaborative effort to develop Python3 libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. The project works along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project.
Package: python3-biosig (2.3.3-1build2)
Section: universe/python
Homepage: https://biosig.sourceforge.io/
Depends: libbiosig3 (= 2.3.3-1build2), python3 (<< 3.11), python3 (>= 3.10~), python3-numpy (>= 1:1.20.0), python3-numpy-abi9, python3-pkg-resources, libc6 (>= 2.4)
Description:  Python3 bindings for BioSig library This package provides Python3 bindings for BioSig library.  Primary goal -- I/O interface to variety of biomedical file formats, including but not limited to SCP-ECG(EN1064), HL7aECG (FDA-XML), GDF, EDF.
Package: python3-biotools (1.2.12-5)
Section: universe/python
Homepage: https://github.com/sonwell/biotools
Depends: python3-matplotlib, python3-numpy, python3:any, clustalw, ncbi-blast+ | ncbi-blast+-legacy
Description:  Python3 bioinformatics utilities for high-throughput genomic sequencing This package contains utilities like  biotools.align - align sequences (hybrid between Needleman-Wunsch and                   Smith-Waterman which is used to find the subsequence                   within a larger sequence that best aligns to a reference)  biotools.annotation - create annotation files. The annotations can be used                        to create a hierarchy among the annotations  biotools.BLAST - manage BLAST databases and interface with the BLAST+                   standalone program available from NCBI.  biotools.clustal - interface to clustalw global (multiple nucleotide or                     peptide sequence alignment)  biotools.complement - creates the complement of a sequence, which can then be                        reversed  biotools.sequence - various tools to deal with sequences  biotools.translate - translate a nucleotide using the standard genetic code . This package contains the Python3 module.
Package: python3-bip32utils (0.0~git20170118.dd9c541-2)
Section: universe/python
Homepage: https://github.com/prusnak/bip32utils
Depends: python3:any, python3-ecdsa
Description:  Python implementation of Bitcoin hierarchical deterministic wallet The bip32utils library is a pure Python implementation of Bitcoin hierarchical deterministic wallet ("HD Wallet") ECDSA key generation as specified in BIP0032 (Bitcoin Improvement Proposal #0032). . Deterministic ECDSA key generation allows creating a sequence of Bitcoin private and public ECDSA keys from an initial seed and a hierarchical set of indices. A number of benefits follow:  - An entire wallet can be backed up once by storing the wallet seed or master    extended private key, and all future addresses in the wallet can be restored    from it.  - The creation of public and private ECDSA keys may be separated from each    other. That is, it is possible to create only the public ECDSA key half    (and receiving address) of an ECDSA key pair, without the ability to create    the private half. Thus, one can create receiving addresses on a public    facing system that if compromised would not give the attacker the ability to    spend bitcoin received at those addresses. A separate, offline machine can    generate the corresponding private ECDSA keys and sign transactions.  - Public and private ECDSA keys may be created in a hierarchy, and control    over or visibility of portions of the hierarchy may be delegated to third    parties.    This has uses for auditing, for separating ECDSA key sequences into    different logical groups or accounts, and for giving 3rd parties the ability    to create spending transactions without first getting a receiving address    in advance.
Package: python3-biplist (1.0.3-3)
Section: universe/python
Homepage: https://bitbucket.org/wooster/biplist
Depends: python3:any
Description:  Python 3 library for reading/writing Mac OS X binary plists biplist is a binary plist parser/generator for Python. Binary Property List (plist) files provide a faster and smaller serialization format for property lists on Mac OS X. This is a library for generating binary plists which can be read by Mac OS X, iOS, or other clients. . This package contains the Python 3 version of biplist.
Package: python3-bitarray (1.6.3-2build2)
Section: universe/python
Homepage: https://github.com/ilanschnell/bitarray
Depends: python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.14)
Description:  Python3 module for efficient boolean array handling The bitarry module provides an object type which efficiently represents an array of booleans. Bitarrays are sequence types and behave very much like usual lists. Eight bits are represented by one byte in contiguous block of memory. The user can select between two representations; little-endian and big-endian. . Most of the functionality is implemented in C. Methods for accessing the machine representation are provided. This can be useful when bit level access to binary files is required, such as portable bitmap image files (.pbm). Also, when dealing with compressed data which uses variable bit length encoding, you may find this module useful. . This package provides the Python3 version of the module.
Package: python3-bitbucket-api (0.5.0-3)
Section: universe/python
Homepage: https://github.com/Sheeprider/BitBucket-api
Depends: python3:any
Description:  library to interact with bitbucket API (Python 3) python-bitbucket-api provides an API to use the following features in bitbucket: .  * Access public user information  * Access public or private repositories, tags or branches  * Create, update or delete one of your repository  * Access, create, update or delete a service (hook)  * Access, create or delete an SSH key  * Download a repository as an archive  * Access, create, update or delete an issue  * Access, create, update or delete an issue comment . This package installs the library for Python 3.
Package: python3-bitcoinlib (0.11.0-1)
Section: universe/python
Homepage: https://github.com/petertodd/python-bitcoinlib
Depends: python3:any, libssl-dev
Description:  Python module with an easy interface to the Bitcoin protocol Python 3 module that provides an easy interface to the bitcoin data structures and protocol. The approach is low-level and "ground up", with a focus on providing tools to manipulate the internals of how Bitcoin works.
Package: python3-bitstring (3.1.7-2)
Section: universe/python
Homepage: http://scott-griffiths.github.io/bitstring/
Depends: python3:any
Description:  Python module for manipulation of binary data (Python 3) Bitstring is a pure Python module designed to help make the creation and analysis of binary data as simple and natural as possible. . Bitstrings can be constructed from integers (big and little endian), hex, octal, binary, strings or files. They can be sliced, joined, reversed, inserted into, overwritten, etc. with simple functions or slice notation. They can also be read from, searched and replaced, and navigated in, similar to a file or stream. . This package provides the Python 3 version of the module.
Package: python3-bitstruct (8.9.0-1build4)
Section: universe/python
Homepage: https://github.com/eerimoq/bitstruct
Depends: python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.14)
Description:  Python bit pack/unpack package This module is intended to have a similar interface as the Python struct module, but working on bits instead of primitive data types (char, int, ...). . This package contains the Python 3 module.
Package: python3-bjdata (0.2.6-1build4)
Section: universe/python
Homepage: https://github.com/fangq/pybj
Depends: python3-numpy (>= 1:1.11.0~), python3-numpy-abi9, python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.14)
Description:  Binary JData (BJData) encoder/decoder for python 3 The BJData spec is derived from the Universal Binary JSON (UBJSON, http://ubjson.org) specification (Draft 12) developed by Riyad Kalla and other UBJSON contributors. This python module implements BJData Spec V1 Draft 1. It was drived from py-ubjson module developed by Iotic Labs Ltd. (https://github.com/Iotic-Labs/py-ubjson)
Package: python3-bladerf (0.2021.10-2)
Section: universe/comm
Homepage: https://www.Nuand.com/bladeRF
Depends: libbladerf-dev (= 0.2021.10-2), python3, python3-cffi, python3:any
Description:  Nuand bladeRF software-defined radio device (Python) The Nuand bladeRF is an open-source software-defined radio (SDR) system, comprised of an RF transceiver, a field-programmable gate array (FPGA), a microcontroller driving a USB 3.0 interface, and a suite of host libraries and drivers to facilitate interaction with the device. . This package provides Python bindings for controlling the bladeRF.