k3ylabs/cosoco-image-dataset huggingface dataset:
Package: belvu (4.44.1+dfsg-7build1)
Section: universe/science
Homepage: https://www.sanger.ac.uk/science/tools/seqtools
Depends: libc6 (>= 2.34), libcairo2 (>= 1.2.4), libcurl4 (>= 7.16.2), libgbtools0 (>= 4.44.1+dfsg), libglib2.0-0 (>= 2.22.0), libgtk2.0-0 (>= 2.10.0), libpango-1.0-0 (>= 1.14.0), libstdc++6 (>= 4.1.1)
Description:  multiple sequence alignment viewer and phylogenetic tool Belvu is a multiple sequence alignment viewer and phylogenetic tool with an extensive set of user-configurable modes to color residues. .  * View multiple sequence alignments.  * Residues can be coloured by conservation, with user-configurable    cutoffs and colours.  * Residues can be coloured by residue type (user-configurable).  * Colour schemes can be imported or exported.  * Swissprot (or PIR) entries can be fetched by double clicking.  * The position in the alignment can be easily tracked.  * Manual deletion of rows and columns.  * Automatic editing of rows and columns based on customisable criteria:     - removal of all-gap columns;     - removal of all gaps;     - removal of redundant sequences;     - removal of a column by a user-specified percentage of gaps;     - filtering of sequences by percent identity;     - removal of sequences by a user-specified percentage of gaps;     - removal of partial sequences (those starting or ending with       gaps); and     - removal of columns by conservation (with user-specified       upper/lower cutoffs).  * The alignment can be saved in Stockholm, Selex, MSF or FASTA format.  * Distance matrices between sequences can be generated using a variety    of distance metrics.  * Distance matrices can be imported or exported.  * Phylogenetic trees can be constructed based on various distance-based    tree reconstruction algorithms.  * Trees can be saved in New Hampshire format.  * Belvu can perform bootstrap phylogenetic reconstruction.
Package: ben (0.9.2ubuntu5)
Section: universe/ocaml
Homepage: https://ben.debian.net
Depends: libben-ocaml-7qmz6, libtyxml-ocaml-rwaj0, ocaml-base-4.13.1, libc6 (>= 2.35), libpq5 (>= 12~~), bzip2, curl, libjs-jquery
Description:  toolbox for Debian maintainers This is a collection of useful tools that Debian maintainers can use to make their packaging work easier. They all work with regular Debian package list files, and should be useful for Debian derivatives as well. This package ships a single executable, "ben", with the following subcommands:  * download: download a set of package list files from a mirror  * monitor: monitor the status of a set of packages across several    architectures (useful for transitions)  * query: query packages using their metadata (similar to grep-dctrl,    but uses a dedicated query language)  * tracker: frontend to multiple monitors
Package: beneath-a-steel-sky (0.0372-8)
Section: universe/games
Homepage: https://www.scummvm.org
Depends: scummvm
Description:  classic 2D point and click science fiction adventure game A science-fiction thriller set in a bleak post-apocalyptic vision of the future, Beneath a Steel Sky revolves around "Union City", where selfishness, rivalry, and corruption by its citizens seems to be all too common, those who can afford it live underground, away from the pollution and social problems which are plaguing the city. . You take on the role of Robert Foster, an outcast of sorts from the city since a boy who was raised in a remote environment outside of Union City simply termed "the gap".  Robert's mother took him away from Union City as a child on their way to "Hobart" but the helicopter crashed on its way, unfortunately Robert's mother dies, but he survives and is left to be raised by a local tribe from the gap. . Years later, Union City security drops by and abducts Robert, killing his tribe in the process; upon reaching the city the helicopter taking him there crashes with him escaping, high upon a tower block in the middle of the city he sets out to discover the truth about his past, and to seek vengeance for the killing of his tribe. . Note that this package only contains game-data.  The game engine is provided by ScummVM.
Package: bepasty (1.0.0-1)
Section: universe/net
Homepage: https://github.com/bepasty/bepasty-server/
Depends: python3-flask, python3-pygments, python3:any, libjs-sphinxdoc (>= 4.3), fonts-font-awesome, libjs-bootbox, libjs-bootstrap4, libjs-bootswatch, libjs-jquery, libjs-jquery-ui, libjs-jquery-file-upload
Description:  binary pastebin / file upload service bepasty is like a pastebin for all kinds of files (text, image, audio, video, documents, ..., binary).
Package: berkeley-abc (1.01+20211229git48498af+dfsg-2)
Section: universe/electronics
Homepage: http://www.eecs.berkeley.edu/~alanmi/abc/
Depends: libbz2-1.0, libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libreadline8 (>= 6.0), libstdc++6 (>= 5), zlib1g (>= 1:1.1.4)
Description:  ABC - A System for Sequential Synthesis and Verification This is a growing software system for synthesis and verification of binary sequential logic circuits appearing in synchronous hardware designs. ABC combines scalable logic optimization based on And-Inverter Graphs (AIGs), optimal-delay DAG-based technology mapping for look-up tables and standard cells, and innovative algorithms for sequential synthesis and verification. . ABC provides an experimental implementation of these algorithms and a programming environment for building similar applications. Future development will focus on improving the algorithms and making most of the packages stand-alone. This will allow the user to customize ABC for their needs as if it were a tool-box rather than a complete tool.
Package: berkeley-express-doc (1.5.3+dfsg-2)
Section: universe/doc
Homepage: http://bio.math.berkeley.edu/eXpress/index.html
Description:  Documentation for RNA-Seq tool eXpress This package provides a PDF with the documentation for eXpress. . eXpress is a streaming tool for quantifying the abundances of a set of target sequences from sampled subsequences. Example applications include transcript-level RNA-Seq quantification, allele-specific/haplotype expression analysis (from RNA-Seq), transcription factor binding quantification in ChIP-Seq, and analysis of metagenomic data. It is based on an online-EM algorithm that results in space (memory) requirements proportional to the total size of the target sequences and time requirements that are proportional to the number of sampled fragments. Thus, in applications such as RNA-Seq, eXpress can accurately quantify much larger samples than other currently available tools greatly reducing computing infrastructure requirements. eXpress can be used to build lightweight high-throughput sequencing processing pipelines when coupled with a streaming aligner (such as Bowtie), as output can be piped directly into eXpress, effectively eliminating the need to store read alignments in memory or on disk. . In an analysis of the performance of eXpress for RNA-Seq data, it was observed that this efficiency does not come at a cost of accuracy. eXpress is more accurate than other available tools, even when limited to smaller datasets that do not require such efficiency. Moreover, like the Cufflinks program, eXpress can be used to estimate transcript abundances in multi-isoform genes. eXpress is also able to resolve multi-mappings of reads across gene families, and does not require a reference genome so that it can be used in conjunction with de novo assemblers such as Trinity, Oases, or Trans-ABySS. The underlying model is based on previously described probabilistic models developed for RNA-Seq but is applicable to other settings where target sequences are sampled, and includes parameters for fragment length distributions, errors in reads, and sequence-specific fragment bias. . eXpress can be used to resolve ambiguous mappings in other high-throughput sequencing based applications. The only required inputs to eXpress are a set of target sequences and a set of sequenced fragments multiply-aligned to them.  While these target sequences will often be gene isoforms, they need not be. Haplotypes can be used as the reference for allele-specific expression analysis, binding regions for ChIP-Seq, or target genomes in metagenomics experiments. eXpress is useful in any analysis where reads multi-map to sequences that differ in abundance.
Package: berkeley-express (1.5.3+dfsg-2)
Section: universe/science
Homepage: http://bio.math.berkeley.edu/eXpress/index.html
Depends: libbamtools2.5.1 (>= 2.5.1+dfsg), libboost-filesystem1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libboost-thread1.74.0 (>= 1.74.0), libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libprotobuf23 (>= 3.12.4), libstdc++6 (>= 11)
Description:  Streaming quantification for high-throughput sequencing eXpress is a streaming tool for quantifying the abundances of a set of target sequences from sampled subsequences. Example applications include transcript-level RNA-Seq quantification, allele-specific/haplotype expression analysis (from RNA-Seq), transcription factor binding quantification in ChIP-Seq, and analysis of metagenomic data. It is based on an online-EM algorithm that results in space (memory) requirements proportional to the total size of the target sequences and time requirements that are proportional to the number of sampled fragments. Thus, in applications such as RNA-Seq, eXpress can accurately quantify much larger samples than other currently available tools greatly reducing computing infrastructure requirements. eXpress can be used to build lightweight high-throughput sequencing processing pipelines when coupled with a streaming aligner (such as Bowtie), as output can be piped directly into eXpress, effectively eliminating the need to store read alignments in memory or on disk. . In an analysis of the performance of eXpress for RNA-Seq data, it was observed that this efficiency does not come at a cost of accuracy. eXpress is more accurate than other available tools, even when limited to smaller datasets that do not require such efficiency. Moreover, like the Cufflinks program, eXpress can be used to estimate transcript abundances in multi-isoform genes. eXpress is also able to resolve multi-mappings of reads across gene families, and does not require a reference genome so that it can be used in conjunction with de novo assemblers such as Trinity, Oases, or Trans-ABySS. The underlying model is based on previously described probabilistic models developed for RNA-Seq but is applicable to other settings where target sequences are sampled, and includes parameters for fragment length distributions, errors in reads, and sequence-specific fragment bias. . eXpress can be used to resolve ambiguous mappings in other high-throughput sequencing based applications. The only required inputs to eXpress are a set of target sequences and a set of sequenced fragments multiply-aligned to them.  While these target sequences will often be gene isoforms, they need not be. Haplotypes can be used as the reference for allele-specific expression analysis, binding regions for ChIP-Seq, or target genomes in metagenomics experiments. eXpress is useful in any analysis where reads multi-map to sequences that differ in abundance.
Package: berrynet-dashboard (3.10.2-1build1)
Section: universe/web
Homepage: https://github.com/DT42/BerryNet
Depends: freeboard
Description:  deep learning gateway - python3 modules BerryNet turns devices into an intelligent gateway with deep learning running on it. No internet connection is required, everything is done locally on the local LAN and the IoT devices. . This package contains the dashboard.
Package: berrynet (3.10.2-1build1)
Section: universe/misc
Homepage: https://github.com/DT42/BerryNet
Depends: berrynet-dashboard (>= 3.10.2-1build1), python3-berrynet (>= 3.10.2-1build1)
Description:  deep learning gateway - meta package BerryNet turns devices into an intelligent gateway with deep learning running on it. No internet connection is required, everything is done locally on the local LAN and the IoT devices. . This package is the meta package that install everything.
Package: berusky-data (1.7-4)
Section: universe/games
Homepage: https://www.anakreon.cz/berusky1.html
Description:  Data files for Berusky Berusky is a free logic game based on an ancient puzzle named Sokoban.  An old idea of moving boxes in a maze has been expanded with new logic items such as explosives, stones, special gates and so on. In addition, up to five bugs can cooperate and be controlled by the player.  In order to leave each level (there's about 120 levels in the game) it is necessary to own five keys and also to have a free way to the exit. . This package contains the data files for Berusky.
Package: berusky2-data (0.12-1)
Section: universe/games
Homepage: https://anakreon.cz/berusky2.html
Description:  logic game Bugs Escape 3D -- data files The game based on Berusky that is also available for Debian, though this is the enhanced 3D version. Berusky II is a game that challenges your visual/spatial thinking and the ability to find a way to resolve a logic task. . The entire game takes place in a 3D environment while you slip into the role of different bugs and lead them out of a maze. In addition to arbitrary turning and level zooming all logical plots happen in space. . In comparison to the first part, new logical elements, a simple linear story accompanied by comic series, various 3D environments, water surfaces and others have been added. . This package contains the data files for Berusky II.
Package: berusky2 (0.12-2)
Section: universe/games
Homepage: https://anakreon.cz/berusky2.html
Depends: berusky2-data (>= 0.12), libalut0 (>= 1.0.1), libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgl1, libglu1-mesa | libglu1, libopenal1 (>= 1.14), libsdl-image1.2 (>= 1.2.10), libsdl1.2debian (>= 1.2.11), libstdc++6 (>= 5.2), libvorbisfile3 (>= 1.1.2), libx11-6, zlib1g (>= 1:1.1.4)
Description:  logic game Bugs Escape 3D The game based on Berusky that is also available for Debian, though this is the enhanced 3D version. Berusky II is a game that challenges your visual/spatial thinking and the ability to find a way to resolve a logic task. . The entire game takes place in a 3D environment while you slip into the role of different bugs and lead them out of a maze. In addition to arbitrary turning and level zooming all logical plots happen in space. . In comparison to the first part, new logical elements, a simple linear story accompanied by comic series, various 3D environments, water surfaces and others have been added.
Package: berusky (1.7.2-2)
Section: universe/games
Homepage: https://www.anakreon.cz/berusky1.html
Depends: berusky-data (>= 1.7), libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libgtk2.0-0 (>= 2.8.0), libsdl-image1.2 (>= 1.2.10), libsdl1.2debian (>= 1.2.11), libstdc++6 (>= 5)
Description:  Logic game based on Sokoban Berusky is a free logic game based on an ancient puzzle named Sokoban.  An old idea of moving boxes in a maze has been expanded with new logic items such as explosives, stones, special gates and so on. In addition, up to five bugs can cooperate and be controlled by the player.  In order to leave each level (there's about 120 levels in the game) it is necessary to own five keys and also to have a free way to the exit.
Package: betaradio (1.6-1build1)
Section: universe/x11
Homepage: http://code.google.com/p/betaradio/
Depends: libc6 (>= 2.4), libglib2.0-0 (>= 2.38), libgstreamer1.0-0 (>= 1.0.0), libgtk-3-0 (>= 3.0.0), libjson-glib-1.0-0 (>= 0.12.0), libltdl7 (>= 2.4.6), libsoup2.4-1 (>= 2.4.0), libx11-6, gstreamer1.0-libav, gstreamer1.0-plugins-bad, gstreamer1.0-plugins-ugly
Description:  Internet radio of Taiwan With this client you can listen to internet radio of Taiwan without opening a browser. It displays a icon on system tray that you can click and select the channel you want to listen to.
Package: bettercap (2.32.0-1ubuntu0.22.04.2)
Section: universe/net
Homepage: https://www.bettercap.org
Depends: ca-certificates, iproute2, iptables, iw, libc6 (>= 2.34), libnetfilter-queue1 (>= 1.0.0), libpcap0.8 (>= 1.5.1), libusb-1.0-0 (>= 2:1.0.22)
Description:  Complete, modular, portable and easily extensible MITM framework The Swiss Army knife for 802.11, BLE, IPv4 and IPv6 networks reconnaissance and MITM attacks. . bettercap is a powerful, easily extensible and portable framework  written in Go which aims to offer to security researchers, red teamers and reverse engineers an easy to use, all-in-one solution with all the features they might possibly need for performing reconnaissance and attacking WiFi networks, Bluetooth Low Energy devices, wireless HID devices and Ethernet networks. . Main Features:  * WiFi networks scanning, deauthentication attack, clientless PMKID    association attack and automatic WPA/WPA2 client handshakes capture.  * Bluetooth Low Energy devices scanning, characteristics enumeration,    reading and writing.  * 2.4Ghz wireless devices scanning and MouseJacking attacks with    over-the-air HID frames injection (with DuckyScript support).  * Passive and active IP network hosts probing and recon.  * ARP, DNS, NDP and DHCPv6 spoofers for MITM attacks on IPv4 and IPv6    based networks.  * Proxies at packet level, TCP level and HTTP/HTTPS application level    fully scriptable with easy to implement javascript plugins.  * A powerful network sniffer for credentials harvesting which can also be    used as a network protocol fuzzer.  * A very fast port scanner.  * A powerful REST API with support for asynchronous events notification    on websocket to orchestrate your attacks easily.  * A very convenient web UI.  * More! (https://www.bettercap.org/modules/) . This package contains a Swiss Army knife for 802.11, BLE and Ethernet networks reconnaissance and attacks.
Package: between (6+dfsg1-3build1)
Section: universe/games
Homepage: http://www.esquire.com/features/best-and-brightest-2008/rohrer-game
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgl1, libglu1-mesa | libglu1, libsdl1.2debian (>= 1.2.11), libstdc++6 (>= 5)
Description:  game about consciousness and isolation Between is a pixelated art game for two players by Jason Rohrer. . You know exactly what you need to do -- you can see it shimmering right there in front of you. You can see it while dreaming, too, and the difference has become subtle. Dreams wake into dreams, and people blend in and out: real characters and dream characters, all woven into the same script. Finally, they fade completely, and you're alone in the expanse with the construction. With time, you feel something growing, a pinhole that eventually yawns into a deep ravine of longing. The construction languishes, though the expanse seems indifferent. . One night, in a dream, they appear: things that you clearly could not have conjured on your own. Not snowflakes. Not the self-similar forms of leaves. Not distant planets' erosion networks as viewed through telescopes. Not those things that are beautifully external but lack the signatures of consciousness. These things that appear are ugly and non-procedural: indecipherable transmissions bubbling up through static, faded messages floating in bottles, and charcoal handprints on cave walls. Evidence has reached you through time of unknown duration and distance of unknown magnitude, but stale evidence is still evidence. . Somewhere, across whatever barriers stand between, is an "other".
Package: bf-utf-source (0.08+nmu2)
Section: universe/devel
Description:  source for fonts needed to build Debian installers This package contains fonts needed to build the debian-installer and bterm-unifont packages. . If you aren't building Debian install images, you probably don't need this package.
Package: bf (20041219ubuntu7)
Section: universe/devel
Depends: libc6 (>= 2.14), libslang2 (>= 2.2.4)
Description:  a fast Brainfuck interpreter bf ('a Brainfuck interpreter') is a simple and fast interpreter for the esoteric programming language Brainfuck. It offers some options to define special behavior, which is nice if you take part in Brainfuck programming contests with special rules. . This package is compiled with S-Lang support.
Package: bfbtester (2.0.1-7.2)
Section: universe/utils
Depends: libc6 (>= 2.34)
Description:  Brute Force Binary Tester BFBTester is great for doing quick, proactive, security checks of binary programs. BFBTester will perform checks of single and multiple argument command line overflows as well as environment variable overflows. BFBTester can also watch for tempfile creation activity to alert the user of any programs using unsafe tempfile names. While BFBTester can not test all overflows in software, it is useful for detecting initial mistakes that can red flag dangerous software.
Package: bfs (2.3.1-1)
Section: universe/utils
Homepage: https://github.com/tavianator/bfs
Depends: libacl1 (>= 2.2.23), libc6 (>= 2.34), libcap2 (>= 1:2.10)
Description:  Breadth-first version of find(1) bfs is a variant of the UNIX `find` command that operates breadth-first rather than depth-first. . It tries to be easier to use than `find`, while remaining compatible with find(1). For example, bfs is less picky about where you put its arguments. bfs also adds some extra options that make some common tasks easier. . When bfs detects that its output is a terminal, it automatically colors its output with the same colors ls uses.
Package: bgoffice-computer-terms (0.0.201010040104-2)
Section: universe/text
Description:  English-Bulgarian dictionary of computer terms Data files for gbgoffice, containing English-Bulgarian dictionary of commonly used computer terms. . Target users are translators of software into Bulgarian.
Package: bgoffice-dict-downloader (0.10)
Section: multiverse/text
Depends: curl, debconf (>= 0.5) | debconf-2.0, perl, liburi-perl, libwww-mechanize-perl
Description:  download dictionaries for gbgoffice bgoffice is a project aimed on creating a full-featured desktop environment, translated and localized for Bulgarian users. . This package contains a helper scripts to automate downloading and installation of dictionaries for gbgoffice. These can't be distributed by Debian, due to licensing problems.
Package: bgpdump (1.6.2-2)
Section: universe/admin
Homepage: https://github.com/RIPE-NCC/bgpdump
Depends: libbz2-1.0, libc6 (>= 2.34), zlib1g (>= 1:1.2.3.3)
Description:  Translate binary zebra/quagga/MRT files into readable output The bgpdump programs analyses the dump files produced by the quagga routing daemon or the Multithreaded Routing Toolkit (MRT).
Package: bgpq3 (0.1.35-1)
Section: universe/net
Homepage: http://snar.spb.ru/prog/bgpq3/
Depends: libc6 (>= 2.15)
Description:  automatic BGP filter generator using RADB data bgpq3 eases BGP filter maintenance by automatically generating prefix lists, (extended) access lists, policy statement terms and AS-path lists using RADB data. It features IPv6 prefix-/access-list support, aggregation of generated filters and output compatible with Cisco, Juniper and BIRD.
Package: bgpq4 (1.4-1)
Section: universe/net
Homepage: https://github.com/bgp/bgpq4
Depends: libc6 (>= 2.34)
Description:  automatic BGP filter generator using IRR routing data bgpq4 eases BGP filter maintenance by automatically generating prefix lists, (extended) access lists, policy statement terms and AS-path lists using IRR routing data. It features IPv6 prefix-/access-list support, aggregation of generated filters and output compatible with Cisco, Juniper, Mikrotik, Nokia, OpenBGPD and BIRD. . It is a fork of bgpq3. By default, it uses IRR server from NTT.
Package: biabam (0.9.7-7.2)
Section: universe/mail
Homepage: http://mmj.dk/biabam/
Depends: bash (>= 2), sharutils, exim4 | mail-transport-agent
Description:  bash attachment mailer A tool that is used for mailing attachments from the commandline. It is similar to using Mutt to send attachments on the commandline, but without the overhead of a complete email client.
Package: bibclean (2.11.4.1-4build1)
Section: universe/tex
Homepage: http://ftp.math.utah.edu/pub/bibclean/
Depends: libc6 (>= 2.14)
Description:  pretty-printer for BibTeX databases This is a pretty-printer and syntax-checker for bibliographic databases in the BibTeX format. It is a useful tool for canonicalizing the layout of personal bibliographies with entries fetched from many different sources.