k3ylabs/cosoco-image-dataset huggingface dataset:
Package: python3-pyani (0.2.11-1)
Section: universe/python
Homepage: https://github.com/widdowquinn/pyani
Depends: python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, python3:any, python3-setuptools, mummer, ncbi-blast+
Description:  Python3 module for average nucleotide identity analyses Pyani is a Python3 module and script that provides support for calculating average nucleotide identity (ANI) and related measures for whole genome comparisons, and rendering relevant graphical summary output. Where available, it takes advantage of multicore systems, and can integrate with SGE/OGE-type job schedulers for the sequence comparisons.
Package: python3-pyannotate (1.2.0-2)
Section: universe/python
Homepage: https://github.com/dropbox/pyannotate
Depends: python3-mypy-extensions, python3-six (>= 1.11.0), python3:any
Description:  auto-generate PEP-484 annotations Insert annotations into your source code based on call arguments and return types observed at runtime. . This package contains both the library and the command-line tool.
Package: python3-pyao (0.82+ds1-5build1)
Section: universe/python
Homepage: https://github.com/tynn/PyAO
Depends: python3 (<< 3.11), python3 (>= 3.10~), libao4 (>= 1.2.2), libc6 (>= 2.14)
Description:  Python interface to the Audio Output library (Python 3) This module makes the libao (Audio Output) functions available in Python. With this module you can write Python applications that use the cross platform audio output library.
Package: python3-pyarmnn (20.08-10build1)
Section: universe/devel
Depends: libarmnn22 (= 20.08-10build1), libarmnntfliteparser22 (= 20.08-10build1), libc6 (>= 2.32), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 11), python3 (<< 3.11), python3 (>= 3.10~), python3-numpy, python3:any
Description:  PyArmNN is a python extension for the Armnn SDK PyArmNN provides interface similar to Arm NN C++ Api. . PyArmNN is built around public headers from the armnn/include folder of Arm NN. PyArmNN does not implement any computation kernels itself, all operations are delegated to the Arm NN library.
Package: python3-pyasn1-modules (0.2.1-1)
Section: python
Homepage: http://pypi.python.org/pypi/pyasn1-modules
Depends: python3-pyasn1 (>= 0.4.1), python3-pyasn1 (<< 0.5.0), python3:any
Description:  Collection of protocols modules written in ASN.1 language (Python 3) This is a small but growing collection of ASN.1 data structures expressed in Python terms using pyasn1 data model. . It's thought to be useful to protocol developers and testers. . Please note that pyasn1_modules is neither part of the pyasn1 package nor related to it.
Package: python3-pyasn1 (0.4.8-1)
Section: python
Homepage: http://snmplabs.com/pyasn1/index.html
Depends: python3:any
Description:  ASN.1 library for Python (Python 3 module) This  is  an implementation  of  ASN.1  types  and codecs  in  Python programming language. It has been first written to support particular protocol (SNMP) but then generalized  to be suitable for a wide range of protocols based on ASN.1 specification. . This package contains the Python 3 module.
Package: python3-pyasn (1.6.1-3build1)
Section: universe/python
Homepage: https://github.com/hadiasghari/pyasn
Depends: python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.4)
Description:  very fast IP address to Autonomous System Number lookups pyasn is a Python extension module that enables very fast IP address to Autonomous System Number lookups. Current state and Historical lookups can be done, based on the MRT/RIB BGP archive used as input. . pyasn is different from other ASN lookup tools in that it provides offline and historical lookups. It provides utility scripts for users to build their own lookup databases based on any MRT/RIB archive. This makes pyasn much faster than online dig/whois/json lookups. . The module is written in C and Python, and cross-compiles on Linux and Windows. Underneath, it uses a radix tree data structure for storage of IP addresses. In the current version, it borrows code from py-radix to support both IPV4 and IPV6 network prefixes. The current release is a beta. Compared to the previous version, it provides support for Python 2 and 3; adds new functionality, performance improvements, and unit-tests. . pyasn is developed and maintained by researchers at the Economics of Cybersecurity research group at Delft University of Technology (http://econsec.tbm.tudlft.nl). The package is used on an almost daily basis and bugs are fixed pretty quickly. The package is largely developed and maintained by Hadi Asghari and Arman Noroozian. Please report any bugs via GitHub (https://github.com/hadiasghari/pyasn) or email the developers.
Package: python3-pyassimp (5.2.2~ds0-1)
Section: universe/python
Homepage: https://assimp.org
Depends: libassimp5 (>= 5.2.2~ds0-1), libassimp5 (<< 5.2.2~ds0+1~), python3-distutils, python3-numpy, python3:any
Description:  3D model import library (Python3 bindings) Assimp is a library to import various well-known 3D model formats ("assets") in a uniform manner. Assimp aims at providing a full asset conversion pipeline for use in game engines / realtime rendering systems of any kind but is not limited to this audience. . This package provides Python3 bindings to the Assimp library.
Package: python3-pyatspi (2.38.2-1)
Section: python
Homepage: https://live.gnome.org/Accessibility
Depends: python3:any, python3-gi, gir1.2-atspi-2.0 (>= 2.33.1), libatk-adaptor, at-spi2-core
Description:  Assistive Technology Service Provider Interface - Python3 bindings at-spi is the "Assistive Technology Service Provider Interface". . This package contains Python3 bindings for the client side aspects of at-spi2.
Package: python3-pyaudio (0.2.11-1.3ubuntu1)
Section: universe/python
Homepage: https://people.csail.mit.edu/hubert/pyaudio/
Depends: python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.14), libportaudio2 (>= 19+svn20101113)
Description:  Python3 bindings for PortAudio v19 PyAudio provides Python bindings for PortAudio v19, the cross-platform audio I/O library. PyAudio makes it easy to use Python to play and record audio via pythonic wrappers around the PortAudio API.  This package is for Python3.
Package: python3-pyavm (0.9.4-7)
Section: universe/python
Homepage: https://astrofrog.github.io/pyavm
Depends: python3:any (>= 3.6~), python3-astropy (>= 0.4.1), python3-numpy (>= 1.1.8.2)
Description:  Python3 module to handle Astronomy Visualization Metadata Standard PyAVM is a module to represent, read, and write metadata following the Astronomy Visualization Metadata (AVM) standard. With pyavm you can: .  * Parse AVM meta-data from an existing image.  * Access and Set the metadata.  * Create an AVM object from scratch.  * Convert to a WCS object.  * Initialize from a FITS header.  * Initialize from a WCS object. . This is the Python 3 Version of the package.
Package: python3-pyaxmlparser (0.3.26-2)
Section: universe/utils
Homepage: https://github.com/appknox/pyaxmlparser
Depends: python3-asn1crypto, python3-click, python3-lxml, python3:any
Description:  Simple Python library to parse Android XML files A simple parsing library written in Python to handle Android XML files. This allows parsing without pulling in larger dependencies (unlike parsers such as Androguard).
Package: python3-pybadges (2.2.1-2)
Section: universe/python
Homepage: https://github.com/google/pybadges/
Depends: python3-jinja2, python3-requests, python3:any
Description:  library for creating Github-style badges (Python3 version) pybadges is a Python library and command line tool that allows you to create Github-style badges as SVG images. The implementation of the library was heavily influenced by Shields.io and the JavaScript gh-badges library. . This package contains the Python 3 version of the library.
Package: python3-pybeam (0.7-2)
Section: universe/python
Homepage: https://github.com/matwey/pybeam
Depends: python3-construct, python3-six, python3:any
Description:  Python module to parse Erlang BEAM files This library provides functionality to parse Erlang BEAM files. . This package contains the Python 3 version of the library.
Package: python3-pybedtools (0.9.0-1build1)
Section: universe/python
Homepage: https://daler.github.io/pybedtools/
Depends: python3 (<< 3.11), python3 (>= 3.10~), python3-pysam, python3-six, python3:any, libc6 (>= 2.33), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4)
Description:  Python 3 wrapper around BEDTools for bioinformatics work The BEDTools suite of programs is widely used for genomic interval manipulation or “genome algebra”. pybedtools wraps and extends BEDTools and offers feature-level manipulations from within Python. . This is the Python 3 version.
Package: python3-pybel (0.14.10-1)
Section: universe/science
Homepage: https://pybel.readthedocs.io
Depends: python3-bel-resources, python3-click, python3-click-plugins, python3-more-itertools, python3-networkx, python3-pandas, python3-pyparsing, python3-requests, python3-requests-file, python3-sqlalchemy, python3-tqdm, python3:any, libjs-jquery, libjs-d3, python3-six
Description:  Biological Expression Language PyBEL is a pure Python package for parsing and handling biological networks encoded in the Biological Expression Language (BEL) version 2. It also facilitates data interchange between common formats and databases such as NetworkX, JSON, CSV, SIF, Cytoscape, CX, NDEx, SQL, and Neo4J. . This package installs the library for Python 3.
Package: python3-pybigwig (0.3.18+dfsg-1build1)
Section: universe/science
Homepage: https://github.com/dpryan79/pyBigWig
Depends: python3-numpy (>= 1:1.20.0), python3-numpy-abi9, python3 (<< 3.11), python3 (>= 3.10~), python3:any, libbigwig0 (>= 0.4.6+dfsg), libc6 (>= 2.35), libpython3.10 (>= 3.10.0)
Description:  Python 3 module for quick access to bigBed and bigWig files This is a Python extension, written in C, for quick access to bigBed files, and access to and creation of bigWig files. . The bigWig format was originally created in the context of genome browsers. There, computing exact summary statistics for a given interval is less important than quickly being able to compute an approximate statistic. Because of this, bigWig files contain not only interval-value associations, but also `sum of values`/`sum of squared values`/`minimum value`/`maximum value`/`number of bases covered` for equally sized bins of various sizes. These different sizes are referred to as "zoom levels". The smallest zoom level has bins that are 16 times the mean interval size in the file and each subsequent zoom level has bins 4 times larger than the previous. This methodology is used in Kent's tools and, therefore, likely used in almost every currently existing bigWig file. . When a bigWig file is queried for a summary statistic, the size of the interval is used to determine whether to use a zoom level and, if so, which one. The optimal zoom level is that which has the largest bins no more than half the width of the desired interval. If no such zoom level exists, the original intervals are instead used for the calculation.
Package: python3-pybind11 (2.9.1-2)
Section: universe/python
Homepage: https://github.com/pybind/pybind11
Depends: python3:any, pybind11-dev (= 2.9.1-2)
Description:  pybind11 helper module for Python 3 pybind11 is a lightweight header library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code. Its goals and syntax are similar to the excellent Boost.Python library by David Abrahams: to minimize boilerplate code in traditional extension modules by inferring type information using compile-time introspection. . This package provides pybind11 for Python 3.
Package: python3-pybindgen (0.20.0+dfsg1-2)
Section: universe/python
Homepage: https://github.com/gjcarneiro/pybindgen
Depends: python3:any
Description:  Python bindings generator (Python 3) This package contains a Python bindings generator. It can generate clean C or C++ code or self contained code. . This package installs the library for Python 3.
Package: python3-pybtex-docutils (1.0.1-1)
Section: universe/python
Homepage: https://github.com/mcmtroffaes/pybtex-docutils
Depends: python3-docutils, python3-pybtex, python3:any
Description:  docutils backend for pybtex Pybtex reads citation information from a file and produces a formatted bibliography. Pybtex-docutils provides a plugin which brings support for docutils to pybtex. . This package provides the modules for Python 3.
Package: python3-pybtex (0.23.0-1)
Section: universe/python
Homepage: https://pybtex.org/
Depends: python3-latexcodec (>= 1.0.4), python3-six, python3-yaml, python3:any, python3-pkg-resources
Description:  public modules for pybtex (Python 3) Pybtex reads citation information from a file and produces a formatted bibliography. BibTeX style files are supported. Alternatively it is possible to write styles in Python. . Pybtex currently understands the following bibliography formats:  * BibTeX  * BibTeXML  * YAML-based format . The resulting bibliography may be output in one of the following formats:  * LaTeX  * HTML  * plain text . This package provides the modules for Python 3.
Package: python3-pycadf (3.1.1-2)
Section: python
Homepage: https://github.com/openstack/pycadf
Depends: pycadf-common (= 3.1.1-2), python3-debtcollector, python3-oslo.config, python3-oslo.serialization, python3-pbr, python3-six (>= 1.10.0), python3-tz, python3:any
Description:  implementation of DMTF Cloud Audit (CADF) data model - 3.x pyCADF is an implementation of DMTF Cloud Audit (CADF) data model. DMTF Cloud Management Initiative is promoting the work of the Cloud Management Work Group, the Cloud Auditing Data Federation Working Group, the System Virtualization, Partitioning, Clustering Working Group and the Software Entitlement Working Group. See http://dmtf.org for details. . This package contains the Python 3.x module.
Package: python3-pycallgraph (1.1.3-1.2)
Section: universe/python
Homepage: https://github.com/daneads/pycallgraph2
Depends: python3:any, graphviz
Description:  Python library that creates call graphs for Python programs It uses GraphViz to generate call graphs from one execution of your Python code. It's very easy to use and can point out possible problems with your code execution. . This package contains the Python 3 module for pycallgraph
Package: python3-pycangjie (1.3-2build2)
Section: universe/python
Homepage: https://github.com/Cangjians/pycangjie
Depends: libcangjie2 (>= 1.2), python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.14)
Description:  Python wrapper to libcangjie This is a Python wrapper to libcangjie, a library that implements the Chinese input method Cangjie (and also Quick).
Package: python3-pycares (4.1.2-2build1)
Section: universe/python
Homepage: https://github.com/saghul/pycares
Depends: python3-idna, python3 (<< 3.11), python3 (>= 3.10~), python3-cffi-backend-api-min (<= 9729), python3-cffi-backend-api-max (>= 9729), python3:any, libc-ares2 (>= 1.17.0), libc6 (>= 2.4)
Description:  Python interface for c-ares (Python 3) pycares is a Python module which provides an interface to c-ares. c-ares is a C library that performs DNS requests and name resolutions asynchronously. . This package installs the library for Python 3.
Package: python3-pycbf (0.9.6+dfsg1-3build1)
Section: universe/python
Homepage: http://www.bernstein-plus-sons.com/software/CBF/
Depends: python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.14), libcbf1 (>= 0.9.5.18)
Description:  Python modules for CBFLib -- Python3 CBFlib is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files. . This package contains the Python3 module.
Package: python3-pycdlib (1.11.0-0ubuntu1)
Section: universe/python
Homepage: https://github.com/clalancette/pycdlib
Depends: python3:any
Description:  Python library to read and write ISOs PyCdlib is a pure python library to parse, write (master), and create ISO9660 files, suitable for writing to a CD or USB. . This package contains the Python 3 module.
Package: python3-pychopper (2.5.0-1)
Section: universe/python
Homepage: https://github.com/nanoporetech/pychopper
Depends: python3-edlib, python3-matplotlib, python3-pandas, python3-parasail, python3-pytest, python3-seaborn, python3-six, python3-sphinx, python3-sphinx-rtd-theme, python3-tqdm, python3:any
Description:  identify, orient and trim full-length Nanopore cDNA reads Pychopper v2 is a Python module to identify, orient and trim full-length Nanopore cDNA reads. It is also able to rescue fused reads and provides the script 'cdna_classifier.py'.  The general approach of Pychopper v2 is the following: .  * Pychopper first identifies alignment hits of the primers across the    length of the sequence. The default method for doing this is using    nhmmscan with the pre-trained strand specific profile HMMs, included    with the package. Alternatively, one can use the edlib backend,    which uses a combination of global and local alignment to identify    the primers within the read.  * After identifying the primer hits by either of the backends, the    reads are divided into segments defined by two consecutive primer    hits. The score of a segment is its length if the configuration of    the flanking primer hits is valid (such as SPP,-VNP for forward reads)    or zero otherwise.  * The segments are assigned to rescued reads using a dynamic programming    algorithm maximizing the sum of used segment scores (hence the amount    of rescued bases). A crucial observation about the algorithm is that    if a segment is included as a rescued read, then the next segment    must be excluded as one of the primer hits defining it was "used    up" by the previous segment. This put constraints on the dynamic    programming graph. The arrows in read define the optimal path for    rescuing two fused reads with the a total score of l1 + l3. . A crucial parameter of Pychopper v2 is -q, which determines the stringency of primer alignment (E-value in the case of the pHMM backend). This can be explicitly specified by the user, however by default it is optimized on a random sample of input reads to produce the maximum number of classified reads.
Package: python3-pychromecast (9.4.0-1)
Section: universe/python
Homepage: https://github.com/home-assistant-libs/pychromecast
Depends: python3-protobuf, python3-zeroconf (>= 0.25.1~), python3:any
Description:  Library to communicate with Google Chromecast (Python 3) This library makes it easy to communicate with a Chromecast device using Python. . It currently supports: .  - Auto discovering connected Chromecasts on the network  - Start the default media receiver and play any online media  - Control playback of current playing media  - Implement Google Chromecast API v2  - Communicate with apps via channels  - Easily extendable to add support for unsupported namespaces . This package contains the Python 3 version of pychromecast
Package: python3-pycifrw (4.4.4-1build1)
Section: universe/python
Homepage: https://bitbucket.org/jamesrhester/pycifrw
Depends: python3-numpy, python3-ply, python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.4)
Description:  CIF/STAR file support for Python PyCIFRW provides support for reading and writing CIF (Crystallographic Information Format) files using Python. . The specifications found in Vol G of the International Tables for Crystallography were used as a reference for CIF 1.0/1.1 syntax. http://dx.doi.org/10.1107/S1600576715021871 was used as the CIF 2.0 reference.
Package: python3-pyclamd (0.4.0-3)
Section: universe/python
Homepage: https://xael.org/pages/pyclamd-en.html
Depends: python3:any
Description:  Python 3 interface to the ClamAV daemon This package adds virus detection capabilities to Python 3 software in an efficient and easy way, thanks to the ClamAV antivirus toolkit.
Package: python3-pyclipper (1.2.1-1build3)
Section: universe/python
Homepage: https://github.com/fonttools/pyclipper
Depends: python3 (<< 3.11), python3 (>= 3.10~), libc6 (>= 2.14), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 11)
Description:  Cython wrapper for the Clipper library Pyclipper is a Cython wrapper exposing public functions and classes of the C++ translation of Angus Johnson’s Clipper library.
Package: python3-pyclustering (0.10.1.2-2)
Section: universe/python
Homepage: https://github.com/annoviko/pyclustering
Depends: python3-matplotlib, python3-numpy, python3-pil, python3-scipy, python3:any
Description:  Data mining algorithms (Python 3) This library provides tools for clustering algorithms, oscillatory networks and neural networks. . This package installs the library for Python 3.
Package: python3-pycoast (1.5.0+dfsg-2)
Section: universe/python
Homepage: https://github.com/pytroll/pycoast
Depends: python3-aggdraw, python3-numpy, python3-pil, python3-pyproj, python3-pyshp, python3:any
Description:  Draw coastlines, borders and rivers on images (for Python 3) Pycoast is a Python package to add coastlines, borders and rivers to raster images using data from the GSHHG (previously known as GSHHS) and WDBII datasets. . This package is part of the PyTroll toolset. . This package contains pycoast for Python 3.
Package: python3-pycodcif (3.4.0+dfsg-1build2)
Section: universe/python
Homepage: http://wiki.crystallography.net/cod-tools
Depends: python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.22)
Description:  error-correcting CIF parser - Python3 bindings Python bindings for Crystallographic Information Format (CIF) v1.1 and v2.0 parser, which is written in C language, and developed by the Crystallography Open Database. A CIF format file is represented by a list of data blocks, where each data block is represented by a dictionary. . This package installs the library for Python 3.
Package: python3-pycodestyle (2.8.0-2)
Section: universe/python
Homepage: https://github.com/PyCQA/pycodestyle
Depends: python3:any
Description:  Python style guide checker (formerly called pep8) - Python 3.x Features a plugin architecture allowing for adding new checks is easily. Parseable output listing line numbers of the error location. Consists of just one Python file, and requires only stdlib. . This package contains the Python 3.x module.
Package: python3-pycosat (0.6.3+dfsg-3build1)
Section: universe/python
Homepage: https://github.com/conda/pycosat
Depends: python3 (<< 3.11), python3 (>= 3.10~), libc6 (>= 2.4), picosat (>= 953)
Description:  Python bindings to picosat PicoSAT is a popular SAT solver written by Armin Biere in pure C. This package provides efficient Python bindings to picosat on the C level, i.e. when importing pycosat, the picosat solver becomes part of the Python process itself.
Package: python3-pycountry (20.7.3+ds1-3)
Section: universe/python
Homepage: https://pypi.org/pypi/pycountry/
Depends: iso-codes (>> 4.8.0~), python3:any
Description:  ISO databases accessible from Python 3 pycountry provides ISO country, subdivision, language, currency and script definitions and their translations, taken from the iso-codes package. . This is the Python 3 version of the package.
Package: python3-pycparser (2.21-1)
Section: python
Homepage: https://github.com/eliben/pycparser
Depends: python3-ply-lex-3.10, python3-ply-yacc-3.10, python3:any
Description:  C parser in Python 3 pycparser is a complete parser of the C language, written in pure Python using the PLY parsing library. It parses C code into an AST and can serve as a front-end for C compilers or analysis tools. . This package contains the Python 3 version.