k3ylabs/cosoco-image-dataset huggingface dataset:
Package: rcs (5.10.1-1)
Section: universe/devel
Homepage: https://www.gnu.org/software/rcs/
Depends: libc6 (>= 2.34)
Description:  The GNU Revision Control System The Revision Control System (RCS) manages multiple revisions of files. RCS automates the storing, retrieval, logging, identification, and merging of revisions. RCS is useful for text that is revised frequently, for example programs, documentation, graphics, papers, and form letters. . Note: this package contains certain general-purpose commands (such as merge or ident) which may used by other programs installed on your system.
Package: rdate (1:1.10.2-1build1)
Section: net
Homepage: https://github.com/resurrecting-open-source-projects/openrdate
Depends: libbsd0 (>= 0.0), libc6 (>= 2.34)
Description:  sets the system's date from a remote host with network time protocol OpenRdate or openrdate or rdate displays and sets the local date and time from the host name or address given as the argument. The time source may be an RFC 868 TCP protocol server, which is usually implemented as a built-in service of inetd(8), or an RFC 5905 protocol SNTP/NTP server. By default, rdate uses the RFC 868 TCP protocol. . OpenRdate supports IPv4 and IPv6 protocols.
Package: rdesktop (1.9.0-2build1)
Section: universe/x11
Homepage: https://www.rdesktop.org/
Depends: libasound2 (>= 1.0.16), libc6 (>= 2.15), libgmp10, libgnutls30 (>= 3.6.12), libgssapi-krb5-2 (>= 1.17), libhogweed6, libnettle8, libpcsclite1 (>= 1.3.3), libtasn1-6 (>= 4.14), libx11-6, libxcursor1 (>> 1.1.2), libxrandr2
Description:  RDP client for Windows NT/2000 Terminal Server and Windows Servers rdesktop is an open source client for Windows NT/2000 Terminal Server and Windows Server 2003/2008. Capable of natively speaking its Remote Desktop Protocol (RDP) in order to present the user's Windows desktop. Unlike Citrix ICA, no server extensions are required.
Package: rdfind (1.5.0-1.1)
Section: universe/utils
Homepage: https://rdfind.pauldreik.se/
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libnettle8, libstdc++6 (>= 5.2)
Description:  find duplicate files utility rdfind is a program to find duplicate files and optionally list, delete them or replace them with symlinks or hard links.  It is a command line program written in c++, which has proven to be pretty quick compared to its alternatives.
Package: rdiff-backup-fs (1.0.0-5)
Section: universe/utils
Homepage: http://code.google.com/p/rdiff-backup-fs/
Depends: libc6 (>= 2.14), libfuse2 (>= 2.6), zlib1g (>= 1:1.2.3.3)
Description:  Fuse filesystem for accessing rdiff-backup archives rdiff-backup-fs is a filesystem in userspace  that  reads  rdiff-backup archives and provides convenient access for different revisions of the copied files and directories.
Package: rdiff-backup (2.0.5-3build1)
Section: universe/utils
Homepage: https://rdiff-backup.net/
Depends: python3-setuptools, python3 (<< 3.11), python3 (>= 3.10~), python3-pkg-resources, python3:any, libc6 (>= 2.4), librsync2 (>= 1.0.0)
Description:  remote incremental backup rdiff-backup backs up one directory to another, possibly over a network. The target directory ends up a copy of the source directory, but extra reverse diffs are stored in a special subdirectory of that target directory, so you can still recover files lost some time ago. The idea is to combine the best features of a mirror and an incremental backup. rdiff-backup also preserves subdirectories, hard links, dev files, permissions, uid/gid ownership, modification times, extended attributes, acls, and resource forks. . Also, rdiff-backup can operate in a bandwidth efficient manner over a pipe, like rsync. Thus you can use rdiff-backup and ssh to securely back a hard drive up to a remote location, and only the differences will be transmitted. Finally, rdiff-backup is easy to use and settings have sensible defaults.
Package: rdiff (2.3.2-1ubuntu1)
Section: universe/utils
Homepage: https://github.com/librsync/librsync
Depends: libc6 (>= 2.34), libpopt0 (>= 1.14), librsync2 (>= 2.0.1)
Description:  Binary diff tool for signature-based differences rdiff is a little like diff and patch all rolled into one, with support for binary files. Since it takes advantage of the rsync remote-delta algorithm, you do not need the source file in the same place as your destination file. . To use it, you generate a "signature" of the original file and copy the signature (which is very small) to the same location as the modified file. Then you generate a "delta" which describes the changes required to turn the source file into the modified file. The small delta file can then be used to "patch" the original file, to transform it into the modified file.
Package: rdist (6.1.5-21)
Section: universe/net
Homepage: http://www.magnicomp.com/rdist/
Depends: libc6 (>= 2.28)
Description:  remote file distribution client and server Rdist is a program to maintain identical copies of files over multiple hosts. It preserves the owner, group, mode, and mtime of files if possible and can update programs that are executing.
Package: rdkit-data (202109.2-1build1)
Section: universe/science
Homepage: http://www.rdkit.org
Description:  Collection of cheminformatics and machine-learning software (data files) RDKit is a Python/C++ based cheminformatics and machine-learning software environment. . This package contains data files.
Package: rdkit-doc (202109.2-1build1)
Section: universe/doc
Homepage: http://www.rdkit.org
Description:  Collection of cheminformatics and machine-learning software (documentation) RDKit is a Python/C++ based cheminformatics and machine-learning software environment. . This package contains the documentation.
Package: rdma-core (39.0-1)
Section: net
Homepage: https://github.com/linux-rdma/rdma-core
Depends: lsb-base (>= 3.2-14~), udev, libc6 (>= 2.34), libnl-3-200 (>= 3.2.7), libsystemd0, libudev1 (>= 183)
Description:  RDMA core userspace infrastructure and documentation This package provides the basic boot time support for systems that use the Linux kernel's remote direct memory access (RDMA) subystem which includes InfiniBand, iWARP, and RDMA over Converged Ethernet (RoCE). . Several kernel RDMA support daemons are included:  - The rdma-ndd daemon which watches for RDMA device changes and/or hostname    changes and updates the Node Description of the RDMA devices based on    those changes.  - The iWARP Port Mapper Daemon (iwpmd) which provides a kernel support    service in userspace for iWARP drivers to claim TCP ports through the    standard socket interface.
Package: rdmacm-utils (39.0-1)
Section: universe/net
Homepage: https://github.com/linux-rdma/rdma-core
Depends: libc6 (>= 2.34), libibverbs1 (>= 1.1.6), librdmacm1 (>= 23)
Description:  Examples for the librdmacm library librdmacm is a library that allows applications to set up reliable connected and unreliable datagram transfers when using RDMA adapters. It provides a transport-neutral interface in the sense that the same code can be used for both InfiniBand and iWARP adapters.  The interface is based on sockets, but adapted for queue pair (QP) based semantics: communication must use a specific RDMA device, and data transfers are message-based. . librdmacm only provides communication management (connection setup and tear-down) and works in conjunction with the verbs interface provided by libibverbs, which provides the interface used to actually transfer data. . This package contains useful librdmacm1 example programs such as rping and udaddy.
Package: rdnssd (1.0.4-2ubuntu2)
Section: universe/net
Homepage: https://www.remlab.net/ndisc6/
Depends: libc6 (>= 2.33), lsb-base (>= 3.0-6)
Description:  IPv6 recursive DNS server discovery daemon rdnssd autoconfigures recursive DNS servers on IPv6 networks using ICMPv6 Neighbor Discovery (RFC 5006), and can update the DNS resolvers configuration (/etc/resolv.conf) accordingly.
Package: rdp-alignment (1.2.0-7)
Section: universe/java
Homepage: https://github.com/rdpstaff/AlignmentTools
Depends: libcommons-cli-java, libcommons-io-java, libcommons-lang-java, libjaxb-api-java, libjaxb-java, rdp-readseq
Description:  Ribosomal Database Project (RDP) alignment tools package The Alignment tools package contains commands to do defined community analysis, pairwise alignment and hidden markov model (HMMER3 models, no training). . The package also contains the AlignmentTools Java library which is used by other RDP tools.
Package: rdp-classifier-doc (2.10.2-6)
Section: universe/doc
Homepage: https://github.com/rdpstaff/classifier
Depends: libjs-jquery-ui
Description:  documentation and examples for rdp-classifier The RDP Classifier is a naive Bayesian classifier which was developed to provide rapid taxonomic placement based on rRNA sequence data. The RDP Classifier can rapidly and accurately classify bacterial and archaeal 16s rRNA sequences, and Fungal LSU sequences. It provides taxonomic assignments from domain to genus, with confidence estimates for each assignment. The RDP Classifier likely can be adapted to additional phylogenetically coherent bacterial taxonomies. . This package contains the JavaDoc generated HTML and examples for rdp-classifier.
Package: rdp-classifier (2.10.2-6)
Section: universe/science
Homepage: https://github.com/rdpstaff/classifier
Depends: libcommons-cli-java, librdp-taxonomy-tree-java, rdp-readseq, default-jre
Description:  extensible sequence classifier for fungal lsu, bacterial and archaeal 16s The RDP Classifier is a naive Bayesian classifier which was developed to provide rapid taxonomic placement based on rRNA sequence data. The RDP Classifier can rapidly and accurately classify bacterial and archaeal 16s rRNA sequences, and Fungal LSU sequences. It provides taxonomic assignments from domain to genus, with confidence estimates for each assignment. The RDP Classifier likely can be adapted to additional phylogenetically coherent bacterial taxonomies.
Package: rdp-readseq (2.0.2-8)
Section: universe/java
Homepage: https://github.com/rdpstaff/ReadSeq
Depends: libcommons-cli-java, libcommons-io-java, libcommons-lang-java, libjaxb-api-java, libjaxb-java
Description:  Ribosomal Database Project (RDP) sequence reading and writing Rdp-readseq is a simple user interface to the sequence reading library developed by the Ribosomal Database Project.  It can handle genbank, embl, fasta, fastq, sff and sto files.  It can read from files or streams, and can handle indexing files. . The package also contains the ReadSeq Java library which is used by other RDP tools.
Package: rdtool-elisp (0.6.38-4)
Section: universe/text
Homepage: https://uwabami.github.com/rdtool/
Depends: emacs | emacsen
Description:  Emacs-lisp rd-mode for writing RD document RD is multipurpose documentation format created for documentating Ruby and output of Ruby world. . You can embed RD into Ruby script. And RD have neat syntax which help you to read document in Ruby script. On the other hand, RD have a feature for class reference. . This package provides Emacs major-mode for RD editing.
Package: rdtool (0.6.38-4)
Section: universe/text
Homepage: https://uwabami.github.com/rdtool/
Depends: ruby | ruby-interpreter, ruby-rd (= 0.6.38-4)
Description:  RD document formatter RD is multipurpose documentation format created for documentating Ruby and output of Ruby world. . You can embed RD into Ruby script. And RD have neat syntax which help you to read document in Ruby script. On the other hand, RD have a feature for class reference. . RDtool is one of frontends of formatter for RD.  This package provides rd2 command.
Package: rdup (1.1.15-1ubuntu2)
Section: universe/utils
Homepage: https://github.com/miekg/rdup
Depends: libarchive13 (>= 3.0.4), libc6 (>= 2.7), libglib2.0-0 (>= 2.12.0), libnettle8, libpcre3, bash (>= 3.0.0)
Description:  utility to create a file list suitable for making backups rdup is a utility inspired by rsync and the plan9 way of doing things. rdup itself does not backup anything. It only prints a list of files that are changed, or all files in case of a null dump. It also handles files that are removed, allowing for correct incremental backups.
Package: re2c (3.0-1)
Section: devel
Homepage: https://re2c.org
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 11)
Description:  lexer generator for C, C++, Go and Rust re2c's main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using a traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons. The resulting programs are faster and often smaller than their table-driven analogues, and they are much easier to debug and understand. Quite a few optimizations are applied in order to speed up and compress the generated code. . Another distinctive feature is its flexible interface: instead of assuming a fixed program template, re2c lets the programmer write most of the interface code and adapt the generated lexer to any particular environment.
Package: re (0.1-7build1)
Section: universe/text
Depends: libc6 (>= 2.14)
Description:  Russian Anywhere -- Russian text converter Russian Anywhere is a Russian character decoding program. It allows one to transfer Russian characters between different codepages. Main purpose is to convert damaged Russian e-mail messages to readable form and it also may be used to convert files from/to known and unknown codepages.
Package: read-edid (3.0.2-1.1)
Section: universe/utils
Homepage: http://www.polypux.org/projects/read-edid/
Depends: libc6 (>= 2.4), libx86-1 (>= 1.1+ds1)
Description:  hardware information-gathering tool for VESA PnP monitors read-edid consists of two tools: . get-edid uses a VESA VBE 2 interrupt service routine request to read a 128 byte EDID version 1 structure from your graphics card, which retrieves this information from the monitor via the Data Display Channel (DDC). . get-edid uses architecture-specific methods for querying the video hardware (real-mode x86 instructions on i386, Open Firmware device tree parsing on PowerMac) and is therefore only available for i386 and powerpc architectures. . parse-edid parses this data structure and outputs data suitable for inclusion into the XFree86 or X.org configuration file. It is available for any architecture.
Package: readline-common (8.1.2-1)
Section: utils
Depends: dpkg (>= 1.15.4) | install-info
Description:  GNU readline and history libraries, common files The GNU readline library aids in the consistency of user interface across discrete programs that need to provide a command line interface. . The GNU history library provides a consistent user interface for recalling lines of previously typed input.
Package: readline-doc (8.1.2-1)
Section: doc
Depends: dpkg (>= 1.15.4) | install-info
Description:  GNU readline and history libraries, documentation and examples The GNU readline library aids in the consistency of user interface across discrete programs that need to provide a command line interface. . The GNU history library provides a consistent user interface for recalling lines of previously typed input.
Package: readseq (1-14)
Section: universe/science
Homepage: http://iubio.bio.indiana.edu/soft/molbio/readseq/
Depends: libc6 (>= 2.7), libncbi6 (>= 6.1.20030421)
Description:  Conversion between sequence formats Reads and writes nucleic/protein sequences in various formats. Data files may have multiple sequences. Readseq is particularly useful as it automatically detects many sequence formats, and converts between them.
Package: readstat (1.1.7-3)
Section: universe/utils
Homepage: https://github.com/WizardMac/ReadStat
Depends: libreadstat1 (= 1.1.7-3), libc6 (>= 2.34), libcsv3 (>= 3.0.3), libxlsxwriter4 (>= 1.1.4)
Description:  read/write data sets from SAS, Stata, and SPSS ReadStat is a command-line tool and MIT-licensed C library for reading files from popular stats packages. Supported data formats include: .  - SAS: SAS7BDAT (binary file) and XPORT (transport file)  - Stata: DTA (binary file) versions 104-119  - SPSS: POR (portable file), SAV (binary file), and ZSAV (compressed binary) . Supported metadata formats include: .  - SAS: SAS7BCAT (catalog file) and .sas (command file)  - Stata: .dct (dictionary file)  - SPSS: .sps (command file) . There is also write support for all the data formats, but not the metadata formats. . This package contains the command line tools: readstat, and extract_metadata.
Package: readucks (0.0.3-3)
Section: universe/science
Homepage: https://github.com/artic-network/readucks
Depends: python3:any, python3-parasail, python3-biopython
Description:  Nanopore read de-multiplexer (read demux -> readux -> readucks, innit) This package is inspired by the demultiplexing options in porechop but without the adapter trimming options - it just demuxes. It uses the parasail library with its Python bindings to do pairwise alignment which provides a considerable speed up over the seqan library used by porechop due to its low-level use of vector processor instructions.
Package: realmd (0.17.0-1ubuntu2)
Section: admin
Homepage: https://www.freedesktop.org/software/realmd/
Depends: libc6 (>= 2.34), libglib2.0-0 (>= 2.39.1), libkrb5-3 (>= 1.10+dfsg~alpha1), libldap-2.5-0 (>= 2.5.4), libpolkit-gobject-1-0 (>= 0.99), libsystemd0
Description:  DBus service for configuring kerberos and other online identities realmd is a D-Bus system service that manages discovery and enrollment in realms/domains like Active Directory or IPA. . realmd can configure either SSSD or Windbind as client software. It will also automatically install the required packages using PackageKit if needed.
Package: reapr (1.0.18+dfsg-5build1)
Section: universe/science
Homepage: https://www.sanger.ac.uk/science/tools/reapr
Depends: libbamtools2.5.1 (>= 2.5.1+dfsg), libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 9), libtabixpp0 (>= 1.0.0), samtools (>= 1.3), bamtools, smalt, r-base, snpomatic, tabix, libfile-copy-link-perl
Description:  universal tool for genome assembly evaluation REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorrect scaffolds and flag other errors in an assembly for manual inspection. It reports mis-assemblies and other warnings, and produces a new broken assembly based on the error calls. . The software requires as input an assembly in FASTA format and paired reads mapped to the assembly in a BAM file. Mapping information such as the fragment coverage and insert size distribution is analysed to locate mis-assemblies. REAPR works best using mapped read pairs from a large insert library (at least 1000bp). Additionally, if a short insert Illumina library is also available, REAPR can combine this with the large insert library in order to score each base of the assembly.
Package: rear-doc (2.6+dfsg-1)
Section: universe/doc
Homepage: https://relax-and-recover.org/
Description:  Bare metal disaster recovery and system migration framework (documentation) It is a modular framework with many ready-to-go workflows for common situations.  Relax-and-Recover produces a bootable image. This image can repartition the system. Once that is done it initiates a restore from backup. Restores to different hardware are possible. Relax-and-Recover can therefore be used as a migration tool as well. . This package contains the documentation of rear.
Package: rear (2.6+dfsg-1)
Section: universe/admin
Homepage: https://relax-and-recover.org/
Depends: attr, bc, binutils, dosfstools, e2fsprogs, ethtool, fdisk | util-linux (<< 2.29.2-3~), gawk, iproute2, iputils-ping, isolinux, kbd, lsb-release, net-tools, openssl, parted, syslinux, syslinux-common, xorriso
Description:  Bare metal disaster recovery and system migration framework It is a modular framework with many ready-to-go workflows for common situations.  Relax-and-Recover produces a bootable image. This image can repartition the system. Once that is done it initiates a restore from backup. Restores to different hardware are possible. Relax-and-Recover can therefore be used as a migration tool as well.
Package: reaver (1.6.5-1)
Section: universe/net
Homepage: https://github.com/t6x/reaver-wps-fork-t6x
Depends: libc6 (>= 2.15), libpcap0.8 (>= 1.0.0)
Description:  brute force attack tool against Wifi Protected Setup PIN number Reaver performs a brute force attack against an access point's WiFi Protected Setup pin number. Once the WPS pin is found, the WPA PSK can be recovered and alternately the AP's wireless settings can be reconfigured.
Package: rebar3 (3.18.0-1)
Section: universe/devel
Homepage: http://www.rebar3.org/
Depends: erlang-asn1:any, erlang-base:any, erlang-common-test:any, erlang-crypto:any, erlang-dev:any, erlang-dialyzer:any, erlang-edoc:any, erlang-eunit:any, erlang-parsetools:any, erlang-reltool:any, erlang-syntax-tools:any, erlang-tools:any
Description:  Erlang tool to create, develop, and release Erlang libraries and applications Rebar3 is an Erlang tool that makes it easy to create, develop, and release Erlang libraries, applications, and systems in a repeatable manner. Rebar3 will:  * respect and enforce standard Erlang/OTP conventions for project structure    so they are easily reusable by the community;  * manage source dependencies and Erlang packages while ensuring repeatable    builds;  * handle build artifacts, paths, and libraries such that standard development    tools can be used without a headache;  * adapt to projects of all sizes on almost any platform;  * treat documentation as a feature, and errors or lack of documentation as a    bug.
Package: rebar (2.6.4-3)
Section: universe/devel
Homepage: https://github.com/rebar/rebar
Depends: erlang-base | erlang-base-hipe, erlang-dev, erlang-tools, erlang-syntax-tools, erlang-crypto, erlang-asn1, erlang-dialyzer, erlang-diameter, erlang-edoc, erlang-eunit, erlang-reltool, erlang-snmp
Description:  Sophisticated build-tool for Erlang projects that follows OTP principles rebar is an Erlang build tool that makes it easy to compile and test Erlang applications, port drivers and releases. . rebar is a self-contained Erlang script, so it's easy to distribute or even embed directly in a project. Where possible, rebar uses standard Erlang/OTP conventions for project structures, thus minimizing the amount of build configuration work. rebar also provides dependency management, enabling application writers to easily re-use common libraries from a variety of locations (git, hg, etc).
Package: reboot-notifier (0.10)
Section: universe/admin
Depends: bsd-mailx | mailx, default-mta | mail-transport-agent
Description:  daily reboot notification mailer This package sends a daily email to the administrator when a system reboot is required due to a kernel update. . The format used for the temporary files in /var/run/ is designed to be compatible with any scripts that were written to work with the late update-notifier-common package.
Package: rebound (2.0.0-1.1)
Section: universe/misc
Homepage: https://github.com/shobrook/rebound
Depends: python3-bs4, python3-requests, python3-urllib3, python3-urwid, python3:any, python3
Description:  Command-line tool to fetch Stack Overflow results when program execution error Rebound is a command-line tool that instantly fetches Stack Overflow results when getting a program execution error in multiple programming languages. This tool will execute the program, pull the error message if needed, and display related Stack Overflow questions and answers without leaving the terminal. . Features .  - Supported file types:    - Python    - Node.js    - Java    - Golang    - Ruby  - View answers in command line mode  - Open browser for GUI
Package: recan (0.1.2-2)
Section: universe/science
Homepage: https://github.com/babinyurii/recan
Depends: python3-biopython, python3-matplotlib, python3-pandas, python3-plotly, python3:any
Description:  genetic distance plotting for recombination events analysis recan is a Python package which allows one to construct genetic distance plots to explore and discover recombination events in viral genomes. . This method has been previously implemented in desktop software tools: RAT, Simplot and RDP4.