k3ylabs/cosoco-image-dataset huggingface dataset:
Package: baitfisher (1.2.7+git20211020.de26d5c+dfsg-1)
Section: universe/science
Homepage: https://github.com/cmayer/BaitFisher-package
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 11)
Description:  software package for designing hybrid enrichment probes The BaitFisher package consists of two programs: BaitFisher and BaitFilter. . BaitFisher was been designed to construct hybrid enrichment baits from multiple sequence alignments (MSAs) or annotated features in MSAs. The main goal of BaitFisher is to avoid redundancy in the construction of baits by designing fewer baits in conserved regions of the MSAs and designing more baits in variable regions. This makes use of the fact that hybrid enrichment baits can differ to some extends from the target region, which they should capture in the enrichment procedure. By specifying the allowed distance between baits and the sequences in the MSAs the user can control the allowed bait-to-target distance and the degree of reduction in the number of baits that are designed. See the BaitFisher paper for details. . BaitFilter was designed (i) to determine whether baits bind unspecifically to a reference genome, (ii) to filter baits that only have partial length matches to a reference genome, (iii) to determine the optimal bait region in a MSA and to convert baits to a format that can be uploaded at a bait constructing company. The optimal bait region can be the most conserved region in the MSA or the region with the highest number of sequences without gaps or ambiguous nucleotides.
Package: balboa-backend-common (2.0.0+ds-4ubuntu0.22.04.2)
Section: universe/net
Homepage: https://github.com/DCSO/balboa
Description:  Common files for balboa backends balboa is the BAsic Little Book Of Answers. It consumes and indexes observations from passive DNS collection, providing a GraphQL interface to access the aggregated contents of the observations database. . This package contains files common to all backends available in Debian, such as systemd unit files and management tools.
Package: balboa-backend-rocksdb (2.0.0+ds-4ubuntu0.22.04.2)
Section: universe/net
Homepage: https://github.com/DCSO/balboa
Depends: libc6 (>= 2.34), librocksdb6.11, balboa-backend-common
Description:  RocksDB backend for balboa balboa is the BAsic Little Book Of Answers. It consumes and indexes observations from passive DNS collection, providing a GraphQL interface to access the aggregated contents of the observations database. . This package contains the RocksDB backend.
Package: balboa (2.0.0+ds-4ubuntu0.22.04.2)
Section: universe/net
Homepage: https://github.com/DCSO/balboa
Depends: libc6 (>= 2.34), adduser
Description:  Passive DNS database with GraphQL interface, frontend balboa is the BAsic Little Book Of Answers. It consumes and indexes observations from passive DNS collection, providing a GraphQL interface to access the aggregated contents of the observations database. . This package contains the frontend, which handles user query interaction and input parsing. It requires a backend to store the consumed observations.
Package: bali-phy (3.6.1+dfsg-1)
Section: universe/science
Homepage: http://www.bali-phy.org
Depends: libboost-chrono1.74.0 (>= 1.74.0), libboost-filesystem1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libboost-random1.74.0 (>= 1.74.0), libc6 (>= 2.34), libcairo2 (>= 1.4.10), libgcc-s1 (>= 3.4), libstdc++6 (>= 11), perl:any, python3
Description:  Bayesian Inference of Alignment and Phylogeny BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences.  BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot. . BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma.  BAli-Phy automatically estimates relative rates for each gene.
Package: ballerburg (1.2.0-4)
Section: universe/games
Homepage: http://baller.tuxfamily.org/
Depends: libc6 (>= 2.14), libsdl1.2debian (>= 1.2.11)
Description:  Classical castle combat game Two castles, separated by a mountain, try to defeat each other with their cannonballs, either by killing the opponent's king or by weakening the opponent enough so that the king capitulates. . Ballerburg was originally written 1987 by Eckhard Kruse, for the Atari ST machines (which were brand new computers at that point in time). Over 25 years later, here's finally the adaption of the original source code to modern operating systems.
Package: balloon (1.1.1-2)
Section: universe/golang
Homepage: http://www.git.cypherpunks.ru/?p=balloon.git;a=summary
Description:  Password hashing with Balloon in pure Go (program) This is a pure Go implementation of Balloon password hashing. See https://crypto.stanford.edu/balloon/ for a description of balloon hashing. . This package provides a CLI tool.
Package: ballview (1.5.0+git20180813.37fc53c-10build1)
Section: universe/science
Homepage: http://www.ball-project.org/
Depends: libball1.5 (>= 1.5.0+git20180813.37fc53c), libballview1.5 (>= 1.5.0+git20180813.37fc53c), libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libglew2.2 (>= 2.2.0-4), libqt5core5a (>= 5.15.1), libqt5gui5 (>= 5.0.2) | libqt5gui5-gles (>= 5.0.2), libqt5opengl5 (>= 5.0.2), libqt5widgets5 (>= 5.0.2), libstdc++6 (>= 11)
Description:  free molecular modeling and molecular graphics tool BALLView provides fast OpenGL-based visualization of molecular structures, molecular mechanics methods (minimization, MD simulation using the AMBER, CHARMM, and MMFF94 force fields), calculation and visualization of electrostatic properties (FDPB) and molecular editing features. . BALLView can be considered a graphical user interface on the basis of BALL (Biochemical Algorithms Library) with a focus on the most common demands of protein chemists and biophysicists in particular.  It is developed in the groups of Hans-Peter Lenhof (Saarland University, Saarbruecken, Germany) and Oliver Kohlbacher (University of Tuebingen, Germany). BALL is an application framework in C++ that has been specifically designed for rapid software development in Molecular Modeling and Computational Molecular Biology.  It provides an extensive set of data structures as well as classes for Molecular Mechanics, advanced solvation methods, comparison and analysis of protein structures, file import/export, and visualization.
Package: ballz-data (1.0.4-1.1)
Section: universe/games
Homepage: https://gitlab.com/ballz
Description:  B.A.L.L.Z. - game data The game is a platformer with some puzzle elements. You take control of a ball which is genetically modified by the British secret service. Your mission is to rescue captured British soldiers from a prison in Iran. . This package contains data files required by the game B.A.L.L.Z.
Package: ballz (1.0.4-1.1)
Section: universe/games
Homepage: https://gitlab.com/ballz
Depends: libaldmb1, liballegro4.4 (>= 2:4.4.3.1), libc6 (>= 2.14), libdumb1, libgcc-s1 (>= 3.0), libguichan-0.8.1-1v5 (>= 0.8.2), libguichan-allegro-0.8.1-1v5 (>= 0.8.2), libstdc++6 (>= 5.2), ballz-data (= 1.0.4-1.1)
Description:  B.A.L.L.Z. - platform/puzzle game where you control a rolling ball The game is a platformer with some puzzle elements. You take control of a ball which is genetically modified by the British secret service. Your mission is to rescue captured British soldiers from a prison in Iran. . The game was written in 72 hours for the TINS competition, a competition similar to Speedhack. The name TINS is an recursive acronym for 'TINS is not Speedhack'.
Package: baloo-kf5-dev (5.92.0-0ubuntu1)
Section: universe/devel
Homepage: https://invent.kde.org/frameworks/baloo
Depends: baloo-kf5 (= 5.92.0-0ubuntu1), libkf5baloo5 (= 5.92.0-0ubuntu1), libkf5balooengine5 (= 5.92.0-0ubuntu1), libkf5config-dev (>= 5.92.0~), libkf5coreaddons-dev (>= 5.92.0~), libkf5filemetadata-dev (>= 5.92.0~)
Description:  framework for searching and managing metadata devel files A framework for searching and managing metadata in KDE Software. . Baloo is part of the KDE Plasma desktop. . This package contains the development files.
Package: baloo-kf5 (5.92.0-0ubuntu1)
Section: universe/utils
Homepage: https://invent.kde.org/frameworks/baloo
Depends: init-system-helpers (>= 1.52), kio, libc6 (>= 2.34), libkf5baloo5 (>= 5.80.0), libkf5balooengine5 (>= 5.92.0), libkf5configcore5 (>= 5.92.0~), libkf5coreaddons5 (>= 5.92.0~), libkf5crash5 (>= 5.92.0~), libkf5dbusaddons5 (>= 5.92.0~), libkf5filemetadata3 (>= 5.92.0~), libkf5i18n5 (>= 5.92.0~), libkf5idletime5 (>= 5.92.0~), libkf5kiocore5 (>= 5.92.0~), libkf5solid5 (>= 5.92.0~), libqt5core5a (>= 5.15.2~), libqt5dbus5 (>= 5.15.2~), libqt5gui5 (>= 5.15.2~) | libqt5gui5-gles (>= 5.15.2~), libqt5qml5 (>= 5.15.2~), libstdc++6 (>= 11)
Description:  framework for searching and managing metadata A framework for searching and managing metadata in KDE Software. . Baloo is part of the KDE Plasma desktop.
Package: balsa-data (2.6.3-1)
Section: universe/gnome
Homepage: https://pawsa.fedorapeople.org/balsa/
Description:  e-mail client for GNOME -- data files Balsa is a highly configurable and robust mail client for the GNOME desktop. It supports both POP3 and IMAP servers as well as the mbox, maildir and mh local mailbox formats. Balsa also supports SMTP and/or the use of a local MTA such as Sendmail. . This package includes documentation, icons, localizations, and other architecture-independent data files for Balsa.
Package: balsa (2.6.3-1)
Section: universe/gnome
Homepage: https://pawsa.fedorapeople.org/balsa/
Depends: balsa-data (= 2.6.3-1), pinentry-gnome3 | pinentry-x11, libc6 (>= 2.34), libcairo2 (>= 1.2.4), libcanberra-gtk3-0 (>= 0.25), libcanberra0 (>= 0.2), libcompfaceg1, libfribidi0 (>= 0.19.2), libgdk-pixbuf-2.0-0 (>= 2.22.0), libglib2.0-0 (>= 2.67.3), libgmime-3.0-0 (>= 3.2.6), libgnutls30 (>= 3.7.0), libgpgme11 (>= 1.5.0), libgspell-1-2 (>= 1.8.2), libgssapi-krb5-2 (>= 1.17), libgtk-3-0 (>= 3.24.0), libgtksourceview-4-0 (>= 2.91.4), libical3 (>= 3.0.0), libldap-2.5-0 (>= 2.5.4), libpango-1.0-0 (>= 1.18.0), libpangocairo-1.0-0 (>= 1.14.0), libsecret-1-0 (>= 0.7), libsqlite3-0 (>= 3.5.9), libwebkit2gtk-4.0-37 (>= 2.25.1), libxml2 (>= 2.7.4)
Description:  e-mail client for GNOME Balsa is a highly configurable and robust mail client for the GNOME desktop. It supports both POP3 and IMAP servers as well as the mbox, maildir and mh local mailbox formats. Balsa also supports SMTP and/or the use of a local MTA such as Sendmail. . Some of Balsa's other features include:   * Allowing nested mailboxes   * Printing   * Spell Checking   * Multi-threaded mail retrieval   * MIME support (view images inline, save parts)   * GPE Palmtop, LDAP, LDIF and vCard address book support   * Multiple character sets for composing and reading messages   * File attachments on outgoing messages   * GPG/OpenPGP mail signing and encryption . Support for Kerberos and SSL has been enabled in this package.
Package: bam (0.5.1-3)
Section: universe/devel
Homepage: https://matricks.github.com/bam/
Depends: libc6 (>= 2.34)
Description:  fast and flexible build system Bam uses Lua to describe the build process. It's takes its inspiration for the script files from scons. While scons focuses on being 100% correct when building, bam makes a few sacrifices to acquire fast full and incremental build times.
Package: bambam (1.1.2+dfsg-3)
Section: universe/games
Homepage: https://github.com/porridge/bambam
Depends: python3:any, python3-pygame
Description:  keyboard mashing and doodling game for babies Bambam is a simple baby keyboard masher application that locks the keyboard and mouse and instead displays bright colors, pictures, and sounds. . Note: to stop the game, type the command shown in upper left-hand corner of the screen.
Package: bambootracker (0.4.6-1build1)
Section: universe/sound
Homepage: https://github.com/rerrahkr/BambooTracker
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libqt5core5a (>= 5.15.1), libqt5gui5 (>= 5.11.0~rc1) | libqt5gui5-gles (>= 5.11.0~rc1), libqt5widgets5 (>= 5.11.0~rc1), librtaudio6 (>= 5.2.0~ds1), librtmidi6 (>= 5.0.0), libstdc++6 (>= 11), libqt5multimedia5-plugins
Description:  YM2608 (OPNA, sound chip of Yamaha) music tracker This is a music tracker for the Yamaha sound chip YM2608 (OPNA) which was used in NEC PC-8801/9801 series computers.
Package: bamclipper (1.0.0-2)
Section: universe/science
Homepage: https://github.com/tommyau/bamclipper
Depends: perl:any, samtools, parallel
Description:  Remove gene-specific primer sequences from SAM/BAM alignments Remove gene-specific primer sequences from SAM/BAM alignments of PCR amplicons by soft-clipping. . bamclipper.sh soft-clips gene-specific primers from BAM alignment file based on genomic coordinates of primer pairs in BEDPE format.
Package: bamf-dbg (0.5.6+22.04.20220217-0ubuntu1)
Section: universe/debug
Homepage: https://launchpad.net/bamf
Depends: libbamf3-2 (= 0.5.6+22.04.20220217-0ubuntu1)
Description:  Window matching library - debugging symbols bamf matches application windows to desktop files . This package contains the daemon used by the library and a gio module that facilitates the matching of applications started through GDesktopAppInfo . This package contains debugging symbols for the daemon and library.
Package: bamfdaemon (0.5.6+22.04.20220217-0ubuntu1)
Section: universe/libs
Homepage: https://launchpad.net/bamf
Depends: libc6 (>= 2.34), libdbusmenu-glib4 (>= 0.4.2), libdbusmenu-gtk3-4 (>= 0.4.2), libgdk-pixbuf-2.0-0 (>= 2.22.0), libglib2.0-0 (>= 2.43.2), libgtk-3-0 (>= 3.9.10), libgtop-2.0-11 (>= 2.22.3), libstartup-notification0 (>= 0.11), libwnck-3-0 (>= 3.4.7), libx11-6, libbamf3-2 (= 0.5.6+22.04.20220217-0ubuntu1)
Description:  Window matching library - daemon bamf matches application windows to desktop files . This package contains the daemon used by the library and a gio module that facilitates the matching of applications started through GDesktopAppInfo
Package: bamkit (0.0.1+git20170413.ccd079d-3)
Section: universe/science
Homepage: https://github.com/hall-lab/bamkit
Depends: python3:any, python3-pysam
Description:  tools for common BAM file manipulations This package provides some Python3 tools for common BAM file manipulations.
Package: bamtools (2.5.1+dfsg-10build1)
Section: universe/science
Homepage: https://github.com/pezmaster31/bamtools/wiki
Depends: libbamtools2.5.1 (>= 2.5.1+dfsg), libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libjsoncpp25 (>= 1.9.5), libstdc++6 (>= 11)
Description:  toolkit for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files.  It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the bamtools command-line toolkit. . Available bamtools commands:  convert  Converts between BAM and a number of other formats  count    Prints number of alignments in BAM file(s)  coverage Prints coverage statistics from the input BAM file  filter   Filters BAM file(s) by user-specified criteria  header   Prints BAM header information  index    Generates index for BAM file  merge    Merge multiple BAM files into single file  random   Select random alignments from existing BAM file(s), intended more           as a testing tool.  resolve  Resolves paired-end reads (marking the IsProperPair flag as needed)  revert   Removes duplicate marks and restores original base qualities  sort     Sorts the BAM file according to some criteria  split    Splits a BAM file on user-specified property, creating a new BAM           output file for each value found  stats    Prints some basic statistics from input BAM file(s)
Package: bandage-examples (0.9.0-1)
Section: universe/science
Homepage: https://rrwick.github.io/Bandage
Description:  Bioinformatics Application for Navigating De novo Assembly Graphs Easily (data) Bandage is a GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others. . De novo assembly graphs contain not only assembled contigs but also the connections between those contigs, which were previously not easily accessible. Bandage visualises assembly graphs, with connections, using graph layout algorithms. Nodes in the drawn graph, which represent contigs, can be automatically labelled with their ID, length or depth. Users can interact with the graph by moving, labelling and colouring nodes. Sequence information can also be extracted directly from the graph viewer. By displaying connections between contigs, Bandage opens up new possibilities for analysing and improving de novo assemblies that are not possible by looking at contigs alone. . More information and download links are on the Bandage website: rrwick.github.io/Bandage . The package contains some example data.
Package: bandage (0.9.0-1)
Section: universe/science
Homepage: https://rrwick.github.io/Bandage
Depends: libc6 (>= 2.34), libgcc-s1 (>= 4.0), libqt5core5a (>= 5.15.1), libqt5gui5 (>= 5.8.0) | libqt5gui5-gles (>= 5.8.0), libqt5svg5 (>= 5.6.0~beta), libqt5widgets5 (>= 5.15.1), libstdc++6 (>= 11)
Description:  Bioinformatics Application for Navigating De novo Assembly Graphs Easily Bandage is a GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others. . De novo assembly graphs contain not only assembled contigs but also the connections between those contigs, which were previously not easily accessible. Bandage visualises assembly graphs, with connections, using graph layout algorithms. Nodes in the drawn graph, which represent contigs, can be automatically labelled with their ID, length or depth. Users can interact with the graph by moving, labelling and colouring nodes. Sequence information can also be extracted directly from the graph viewer. By displaying connections between contigs, Bandage opens up new possibilities for analysing and improving de novo assemblies that are not possible by looking at contigs alone. . More information and download links are on the Bandage website: rrwick.github.io/Bandage . The package is relevant to the field of genome assembly.
Package: bandit (1.6.2-1)
Section: universe/python
Homepage: https://github.com/PyCQA/bandit
Depends: python3-bandit (= 1.6.2-1)
Description:  Security oriented static analyzer for Python code - Metapackage Bandit is a tool designed to find common security issues in Python code. To do this Bandit processes each file, builds an Abstract Syntaxt Tree (AST), and runs appropriate plugins against the AST nodes.  Once Bandit has finished scanning all the files it generates a report. . This package is a metapackage to install the Python 2.7 or 3.x of bandit.
Package: bandwidthd-pgsql (2.0.1+cvs20090917-13build1)
Section: universe/net
Homepage: http://bandwidthd.sourceforge.net/
Depends: dbconfig-common, postgresql-client, ucf, debconf (>= 0.5) | debconf-2.0, libc6 (>= 2.33), libgd3 (>= 2.1.0~alpha~), libpcap0.8 (>= 0.9.8), libpq5, lsb-base
Description:  Tracks usage of TCP/IP and builds html files with graphs BandwidthD tracks usage of TCP/IP network subnets and builds html files with graphs to display utilization. Charts are built by individual IPs. Color Codes HTTP, TCP,UDP, ICMP, VPN, P2P, etc. . This is the PostgreSQL version of bandwidthd which supports multiple sensors and uses a dynamic (php-based) web interface. If you don't need these features then using the package bandwidthd is suggested.
Package: bandwidthd (2.0.1+cvs20090917-13build1)
Section: universe/net
Homepage: http://bandwidthd.sourceforge.net/
Depends: ucf, debconf (>= 0.5) | debconf-2.0, libc6 (>= 2.33), libgd3 (>= 2.1.0~alpha~), libpcap0.8 (>= 0.9.8), lsb-base
Description:  Tracks usage of TCP/IP and builds html files with graphs BandwidthD tracks usage of TCP/IP network subnets and builds html files with graphs to display utilization. Charts are built by individual IPs. Color Codes HTTP, TCP,UDP, ICMP, VPN, P2P, etc. . This is the static version, see bandwidthd-pgsql for multi sensor/php frontend bandwidthd.
Package: baobab (41.0-2)
Section: gnome
Homepage: https://wiki.gnome.org/Apps/Baobab
Depends: dconf-gsettings-backend | gsettings-backend, libc6 (>= 2.34), libcairo2 (>= 1.2.4), libglib2.0-0 (>= 2.55.1), libgtk-3-0 (>= 3.24.1), libhandy-1-0 (>= 1.5.90), libpango-1.0-0 (>= 1.14.0)
Description:  GNOME disk usage analyzer Disk Usage Analyzer is a graphical, menu-driven application to analyse disk usage in a GNOME environment. It can easily scan either the whole filesystem tree, or a specific user-requested directory branch (local or remote). . It also auto-detects in real-time any changes made to your home directory as far as any mounted/unmounted device. Disk Usage Analyzer also provides a full graphical treemap window for each selected folder.
Package: bar (1.11.1-3)
Section: universe/utils
Depends: libc6 (>= 2.15)
Description:  Show information about a data transfer Bar is a simple tool to process a stream of data and print a display  for the  user  on stderr showing (a) the amount of data passed, (b) the throughput of the data  transfer,  and, if the total size of the data stream is known, (c) estimated time remaining, percent complete, and a progress bar. . Bar was originally written for the purpose of estimating the amount  of time needed to transfer large amounts (many, many gigabytes) of data across a network.  (Usually in an SSH/tar pipe.)
Package: barbican-api (2:14.0.2-0ubuntu1)
Section: net
Homepage: https://github.com/openstack/barbican
Depends: apache2 | httpd, libapache2-mod-wsgi-py3, python3-barbican (= 2:14.0.2-0ubuntu1)
Description:  OpenStack Key Management Service - API Server The Barbican project provides services for secure storage, provisioning and management of sensitive client secret information such as encryption keys. It is aims at being useful for all environments, including large ephemeral Clouds. . This package contains the Barbican API Server.
Package: barbican-common (2:14.0.2-0ubuntu1)
Section: net
Homepage: https://github.com/openstack/barbican
Depends: adduser
Description:  OpenStack Key Management Service - common files The Barbican project provides services for secure storage, provisioning and management of sensitive client secret information such as encryption keys. It is aims at being useful for all environments, including large ephemeral Clouds. . This package contains common files for Barbican.
Package: barbican-doc (2:14.0.2-0ubuntu1)
Section: doc
Homepage: https://github.com/openstack/barbican
Depends: libjs-sphinxdoc (>= 4.3)
Description:  OpenStack Key Management Service - doc The Barbican project provides services for secure storage, provisioning and management of sensitive client secret information such as encryption keys. It is aims at being useful for all environments, including large ephemeral Clouds. . This package contains the documentation.
Package: barbican-keystone-listener (2:14.0.2-0ubuntu1)
Section: net
Homepage: https://github.com/openstack/barbican
Depends: python3-barbican (= 2:14.0.2-0ubuntu1)
Description:  OpenStack Key Management Service - Keystone Listener The Barbican project provides services for secure storage, provisioning and management of sensitive client secret information such as encryption keys. It is aims at being useful for all environments, including large ephemeral Clouds. . This package contains the Barbican Keystone Listener daemon.
Package: barbican-tempest-plugin (1.5.0-1)
Section: universe/net
Homepage: https://opendev.org/openstack/barbican-tempest-plugin
Depends: python3-pbr, python3-cryptography, python3-oslo.config, tempest, python3-tempest, python3:any
Description:  OpenStack Integration Test Suite - Barbican plugin Tempest is a set of integration tests to be run against a live Openstack cluster in order to make sure that all components are working as expected. Tempest will start and stop virtual machine in order to check that your cloud is working as expected. . This package contains the Barbican plugin.