k3ylabs/cosoco-image-dataset huggingface dataset:
Package: binutils-powerpc64-linux-gnu-dbg (2.38-4ubuntu2.5)
Section: universe/debug
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-powerpc64-linux-gnu (= 2.38-4ubuntu2.5)
Description:  GNU binary utilities, for powerpc64-linux-gnu target (debug symbols) This package provides debug symbols for binutils-powerpc64-linux-gnu.
Package: binutils-powerpc64-linux-gnu (2.38-4ubuntu2.5)
Section: universe/devel
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-common (= 2.38-4ubuntu2.5), libc6 (>= 2.34), libgcc-s1 (>= 4.2), zlib1g (>= 1:1.1.4)
Description:  GNU binary utilities, for powerpc64-linux-gnu target This package provides GNU assembler, linker and binary utilities for the powerpc64-linux-gnu target. . You don't need this package unless you plan to cross-compile programs for powerpc64-linux-gnu and powerpc64-linux-gnu is not your native platform.
Package: binutils-powerpc64le-linux-gnu-dbg (2.38-4ubuntu2.5)
Section: debug
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-powerpc64le-linux-gnu (= 2.38-4ubuntu2.5)
Description:  GNU binary utilities, for powerpc64le-linux-gnu target (debug symbols) This package provides debug symbols for binutils-powerpc64le-linux-gnu.
Package: binutils-powerpc64le-linux-gnu (2.38-4ubuntu2.5)
Section: devel
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-common (= 2.38-4ubuntu2.5), libc6 (>= 2.34), libgcc-s1 (>= 4.2), zlib1g (>= 1:1.1.4)
Description:  GNU binary utilities, for powerpc64le-linux-gnu target This package provides GNU assembler, linker and binary utilities for the powerpc64le-linux-gnu target. . You don't need this package unless you plan to cross-compile programs for powerpc64le-linux-gnu and powerpc64le-linux-gnu is not your native platform.
Package: binutils-riscv64-linux-gnu-dbg (2.38-4ubuntu2.5)
Section: universe/debug
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-riscv64-linux-gnu (= 2.38-4ubuntu2.5)
Description:  GNU binary utilities, for riscv64-linux-gnu target (debug symbols) This package provides debug symbols for binutils-riscv64-linux-gnu.
Package: binutils-riscv64-linux-gnu (2.38-4ubuntu2.5)
Section: devel
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-common (= 2.38-4ubuntu2.5), libc6 (>= 2.34), zlib1g (>= 1:1.1.4)
Description:  GNU binary utilities, for riscv64-linux-gnu target This package provides GNU assembler, linker and binary utilities for the riscv64-linux-gnu target. . You don't need this package unless you plan to cross-compile programs for riscv64-linux-gnu and riscv64-linux-gnu is not your native platform.
Package: binutils-riscv64-unknown-elf (2.35.1-0ubuntu1)
Section: universe/devel
Homepage: https://github.com/riscv/riscv-binutils-gdb
Depends: libc6 (>= 2.27), zlib1g (>= 1:1.2.0)
Description:  GNU assembler, linker and binary utilities for RISC-V processors Bare metal binutils for embedded RISC-V chips. The programs in this package are used to manipulate binary and object files that have been created for RISC-V architecture.
Package: binutils-s390x-linux-gnu-dbg (2.38-4ubuntu2.5)
Section: debug
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-s390x-linux-gnu (= 2.38-4ubuntu2.5)
Description:  GNU binary utilities, for s390x-linux-gnu target (debug symbols) This package provides debug symbols for binutils-s390x-linux-gnu.
Package: binutils-s390x-linux-gnu (2.38-4ubuntu2.5)
Section: devel
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-common (= 2.38-4ubuntu2.5), libc6 (>= 2.34), libgcc-s1 (>= 4.2), zlib1g (>= 1:1.1.4)
Description:  GNU binary utilities, for s390x-linux-gnu target This package provides GNU assembler, linker and binary utilities for the s390x-linux-gnu target. . You don't need this package unless you plan to cross-compile programs for s390x-linux-gnu and s390x-linux-gnu is not your native platform.
Package: binutils-sh-elf (2.38+1build1)
Section: universe/devel
Homepage: https://sourceware.org/binutils/
Depends: libc6 (>= 2.34), zlib1g (>= 1:1.2.0)
Description:  GNU binary utilities for embedded SuperH devices This package provides GNU assembler, linker and binary utilities for a specific hardware and operating system combination.  You don’t need it unless you plan to cross-compile programs for it. . This package targets bare-metal SuperH devices, including all CPUs SH-1 through SH-4a.
Package: binutils-sh4-linux-gnu-dbg (2.38-4ubuntu2.5)
Section: universe/debug
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-sh4-linux-gnu (= 2.38-4ubuntu2.5)
Description:  GNU binary utilities, for sh4-linux-gnu target (debug symbols) This package provides debug symbols for binutils-sh4-linux-gnu.
Package: binutils-sh4-linux-gnu (2.38-4ubuntu2.5)
Section: universe/devel
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-common (= 2.38-4ubuntu2.5), libc6 (>= 2.34), zlib1g (>= 1:1.1.4)
Description:  GNU binary utilities, for sh4-linux-gnu target This package provides GNU assembler, linker and binary utilities for the sh4-linux-gnu target. . You don't need this package unless you plan to cross-compile programs for sh4-linux-gnu and sh4-linux-gnu is not your native platform.
Package: binutils-source (2.38-4ubuntu2.5)
Section: universe/devel
Homepage: https://www.gnu.org/software/binutils/
Depends: texinfo, zlib1g-dev, make, python3
Description:  GNU assembler, linker and binary utilities (source) This package contains the sources and patches which are needed to build binutils.
Package: binutils-sparc64-linux-gnu-dbg (2.38-4ubuntu2.5)
Section: universe/debug
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-sparc64-linux-gnu (= 2.38-4ubuntu2.5)
Description:  GNU binary utilities, for sparc64-linux-gnu target (debug symbols) This package provides debug symbols for binutils-sparc64-linux-gnu.
Package: binutils-sparc64-linux-gnu (2.38-4ubuntu2.5)
Section: universe/devel
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-common (= 2.38-4ubuntu2.5), libc6 (>= 2.34), libgcc-s1 (>= 4.2), zlib1g (>= 1:1.1.4)
Description:  GNU binary utilities, for sparc64-linux-gnu target This package provides GNU assembler, linker and binary utilities for the sparc64-linux-gnu target. . You don't need this package unless you plan to cross-compile programs for sparc64-linux-gnu and sparc64-linux-gnu is not your native platform.
Package: binutils-x86-64-kfreebsd-gnu-dbg (2.38-4ubuntu2.5)
Section: debug
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-x86-64-kfreebsd-gnu (= 2.38-4ubuntu2.5)
Description:  GNU binary utilities, for x86-64-kfreebsd-gnu target (debug symbols) This package provides debug symbols for binutils-x86-64-kfreebsd-gnu.
Package: binutils-x86-64-kfreebsd-gnu (2.38-4ubuntu2.5)
Section: devel
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-common (= 2.38-4ubuntu2.5), libc6 (>= 2.34), libgcc-s1 (>= 4.2), zlib1g (>= 1:1.1.4)
Description:  GNU binary utilities, for x86-64-kfreebsd-gnu target This package provides GNU assembler, linker and binary utilities for the x86-64-kfreebsd-gnu target. . You don't need this package unless you plan to cross-compile programs for x86-64-kfreebsd-gnu and x86-64-kfreebsd-gnu is not your native platform.
Package: binutils-x86-64-linux-gnu-dbg (2.38-4ubuntu2.5)
Section: debug
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-x86-64-linux-gnu (= 2.38-4ubuntu2.5)
Description:  GNU binary utilities, for x86-64-linux-gnu target (debug symbols) This package provides debug symbols for binutils-x86-64-linux-gnu.
Package: binutils-x86-64-linux-gnu (2.38-4ubuntu2.5)
Section: devel
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-common (= 2.38-4ubuntu2.5), libbinutils (= 2.38-4ubuntu2.5), libc6 (>= 2.34), libctf-nobfd0 (>= 2.36), libctf0 (>= 2.36), libgcc-s1 (>= 4.2), zlib1g (>= 1:1.1.4)
Description:  GNU binary utilities, for x86-64-linux-gnu target This package provides GNU assembler, linker and binary utilities for the x86-64-linux-gnu target. . You don't need this package unless you plan to cross-compile programs for x86-64-linux-gnu and x86-64-linux-gnu is not your native platform.
Package: binutils-x86-64-linux-gnux32-dbg (2.38-4ubuntu2.5)
Section: debug
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-x86-64-linux-gnux32 (= 2.38-4ubuntu2.5)
Description:  GNU binary utilities, for x86-64-linux-gnux32 target (debug symbols) This package provides debug symbols for binutils-x86-64-linux-gnux32.
Package: binutils-x86-64-linux-gnux32 (2.38-4ubuntu2.5)
Section: devel
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-common (= 2.38-4ubuntu2.5), libc6 (>= 2.34), libgcc-s1 (>= 4.2), zlib1g (>= 1:1.1.4)
Description:  GNU binary utilities, for x86-64-linux-gnux32 target This package provides GNU assembler, linker and binary utilities for the x86-64-linux-gnux32 target. . You don't need this package unless you plan to cross-compile programs for x86-64-linux-gnux32 and x86-64-linux-gnux32 is not your native platform.
Package: binutils-xtensa-lx106 (2.38-3ubuntu1+4build1)
Section: universe/devel
Homepage: https://sourceware.org/binutils/
Depends: libc6 (>= 2.34), zlib1g (>= 1:1.2.0)
Description:  GNU binary utilities, for Xtensa lx106 core Bare metal binutils for chips using the Xtensa lx106 core, such as the Espressif ESP8266 wireless modules. The programs in this package are used to manipulate binary and object files that may have been created for the Xtensa architecture. This package is primarily for those developing for the ESP8266 platform and is not needed by normal users or developers.
Package: binutils-z80 (2.38-3ubuntu1+4build3)
Section: universe/devel
Homepage: https://www.gnu.org/software/binutils/
Depends: libc6 (>= 2.34)
Description:  GNU binary utilities for the z80-unknown-coff target The programs in this package are used to assemble, link and manipulate binary and object files for the Z80 and R800 CPUs. This package is primarily for Z80 and R800 developers and is not needed by normal users or developers.
Package: binutils (2.38-4ubuntu2.5)
Section: devel
Homepage: https://www.gnu.org/software/binutils/
Depends: binutils-common (= 2.38-4ubuntu2.5), libbinutils (= 2.38-4ubuntu2.5), binutils-x86-64-linux-gnu (= 2.38-4ubuntu2.5)
Description:  GNU assembler, linker and binary utilities The programs in this package are used to assemble, link and manipulate binary and object files.  They may be used in conjunction with a compiler and various libraries to build programs.
Package: binwalk (2.3.3+dfsg1-2)
Section: universe/devel
Homepage: https://github.com/ReFirmLabs/binwalk
Depends: python3-binwalk, python3:any
Description:  tool library for analyzing binary blobs and executable code Binwalk is a tool for searching a given binary image for embedded files and executable code. Specifically, it is designed for identifying files and code embedded inside of firmware images. Binwalk uses the libmagic library, so it is compatible with magic signatures created for the Unix file utility. . Binwalk also includes a custom magic signature file which contains improved signatures for files that are commonly found in firmware images such as compressed/archived files, firmware headers, Linux kernels, bootloaders, filesystems, etc. . This package is an empty package, because the binary tool is already provided with the library, dependency of this package.
Package: bio-eagle-examples (2.4.1-3build1)
Section: universe/science
Homepage: https://data.broadinstitute.org/alkesgroup/Eagle/
Description:  Examples for bio-eagle Eagle estimates haplotype phase either within a genotyped cohort or using a phased reference panel. The basic idea of the Eagle1 algorithm is to harness identity-by-descent among distant relatives—which is pervasive at very large sample sizes but rare among smaller numbers of samples—to rapidly call phase using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods. . This package provides some example data for eagle.
Package: bio-eagle (2.4.1-3build1)
Section: universe/science
Homepage: https://data.broadinstitute.org/alkesgroup/Eagle/
Depends: libboost-iostreams1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libhts3 (>= 1.10), libopenblas0, libstdc++6 (>= 5.2)
Description:  Haplotype phasing within a genotyped cohort or using a phased reference panel Eagle estimates haplotype phase either within a genotyped cohort or using a phased reference panel. The basic idea of the Eagle1 algorithm is to harness identity-by-descent among distant relatives—which is pervasive at very large sample sizes but rare among smaller numbers of samples—to rapidly call phase using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods. . Please note: The executable was renamed to bio-eagle because of a name clash. Please read more about this in /usr/share/doc/bio-eagle/README.Debian.
Package: bio-rainbow (2.0.4+dfsg-2)
Section: universe/science
Homepage: http://sourceforge.net/projects/bio-rainbow/
Depends: libc6 (>= 2.29), perl:any
Description:  clustering and assembling short reads for bioinformatics Efficient tool for clustering and assembling short reads, especially for RAD. . Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like strategy to divide potential groups into haplotypes in a top-down manner. long a guided tree, it iteratively merges sibling leaves in a bottom-up manner if they are similar enough. Here, the similarity is defined by comparing the 2nd reads of a RAD segment. This approach tries to collapse heterozygote while discriminate repetitive sequences. At last, Rainbow uses a greedy algorithm to locally assemble merged reads into contigs. Rainbow not only outputs the optimal but also suboptimal assembly results. Based on simulation and a real guppy RAD-seq data, it is shown that Rainbow is more competent than the other tools in dealing with RAD-seq data.
Package: bio-tradis (1.4.5+dfsg2-1)
Section: universe/perl
Homepage: https://github.com/sanger-pathogens/Bio-Tradis
Depends: perl:any, libbio-perl-perl, libexception-class-perl, libmoose-perl, libtext-csv-perl, libtry-tiny-perl, smalt, samtools, tabix, r-base-core, r-cran-getopt, r-cran-mass
Description:  analyse the output from TraDIS analyses of genomic sequences Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. . The Bio-Tradis analysis pipeline is implemented as an extensible Perl library which can either be used as is, or as a basis for the development of more advanced analysis tools. . Please note: You need to manually install BioConductor Edger which can not be distributed by Debian in recent version since it is using non-distributable code locfit.
Package: bio-vcf (0.9.5-3)
Section: universe/science
Homepage: https://github.com/vcflib/bio-vcf
Depends: ruby
Description:  domain specific language (DSL) for processing the VCF format Bio-vcf provides a domain specific language (DSL) for processing the VCF format. Record named fields can be queried with regular expressions, e.g. .  sample.dp>20 and rec.filter !~ /LowQD/ and rec.tumor.bcount[rec.alt]>4 . Bio-vcf is a new generation VCF parser, filter and converter. Bio-vcf is not only very fast for genome-wide (WGS) data, it also comes with a really nice filtering, evaluation and rewrite language and it can output any type of textual data, including VCF header and contents in RDF and JSON.
Package: bioawk (1.0-4)
Section: universe/science
Homepage: https://github.com/lh3/bioawk
Depends: libc6 (>= 2.29), zlib1g (>= 1:1.1.4)
Description:  extension of awk for biological sequence analysis Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names. It also adds a few built-in functions and an command line option to use TAB as the input/output delimiter. When the new functionality is not used, bioawk is intended to behave exactly the same as the original BWK awk.
Package: biobambam2 (2.0.183+ds-1)
Section: universe/science
Homepage: https://gitlab.com/german.tischler/biobambam2
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.4), libgomp1 (>= 6), libmaus2-2 (>= 2.0.806+ds), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4)
Description:  tools for early stage alignment file processing This package contains some tools for processing BAM files, including .   bamsormadup:  parallel sorting and duplicate marking   bamcollate2:  reads BAM and writes BAM reordered such that alignment                 or collated by query name   bammarkduplicates: reads BAM and writes BAM with duplicate alignments                 marked using the BAM flags field   bammaskflags: reads BAM and writes BAM while masking (removing) bits                 from the flags column   bamrecompress: reads BAM and writes BAM with a defined compression                  setting. This tool is capable of multi-threading.   bamsort:       reads BAM and writes BAM resorted by coordinates or                  query name   bamtofastq:    reads BAM and writes FastQ; output can be collated                  or uncollated by query name
Package: biogenesis (0.8-3.1)
Section: universe/science
Homepage: http://biogenesis.sourceforge.net/
Depends: default-jre | java6-runtime
Description:  artificial life program that simulates evolution of organisms Biogenesis is an artificial life program that simulates the processes involved in the evolution of organisms. It shows colored segment based organisms that mutate and evolve in a 2D environment. Biogenesis is based on Primordial Life.
Package: biometric-auth (0.9.70-1)
Section: universe/admin
Homepage: https://github.com/ukui/biometric-authentication.git
Depends: libbiometric0 (= 0.9.70-1), libc6 (>= 2.4), libglib2.0-0 (>= 2.37.3), libpolkit-gobject-1-0 (>= 0.99), libusb-1.0-0 (>= 2:1.0.9), systemd
Description:  Biometric Authentication Service The service layer of the biometric identification authentication framework. The service layer uses the DBus bus to provide the upper application with operation interfaces such as feature enroll, feature verify, feature identify, feature search, feature delete, etc. Meanwhile, it also provides notification of device status changes event and notification of USB device hotplug event. . This package contains a library for biometric authentication.
Package: biometric-driver-community-multidevice (0.9.70-1)
Section: universe/admin
Homepage: https://github.com/ukui/biometric-authentication.git
Depends: libbiometric0 (>= 0.9.58), libc6 (>= 2.14), libfprint-2-2 (>= 1:1.90.1), libglib2.0-0 (>= 2.36), bio-drv-api-0.10, biometric-utils
Description:  Biometric Authentication Driver (community multidevice) Community multi-device drivers for biometric authentication. Community multi-device drivers use libfprint for biometric identification. . This package supports following devices:   upekts, uru4000, aes4000, aes2501, upektc, aes1610, fdu2000, vcom5s,   upeksonly, vfs101, vfs301, aes2550, aes1660, aes2660, aes3500,   upektc_img, etes603, vfs5011, vfs0050, elan.
Package: biometric-utils (0.9.70-1)
Section: universe/admin
Homepage: https://github.com/ukui/biometric-authentication.git
Depends: libc6 (>= 2.4), libglib2.0-0 (>= 2.39.4), python3:any, biometric-auth, systemd, python3-prettytable, python3-dbus, python3-gi
Description:  Biometric authentication utils Biometric authentication tools. This package provides the biometric-config-tool and biometric-device-discover tools:  - biometric-auth-client: The command line client of the biometric    identification framework service;  - biometric-config-tool: add, remove, configure the biometric drivers;  - biometric-device-discover: discover the devices supported by the biometric    framework;
Package: bioperl-run (1.7.3-8)
Section: universe/science
Homepage: https://metacpan.org/release/BioPerl-Run
Depends: perl:any, bioperl (>= 1.7.4), libbio-perl-run-perl (= 1.7.3-8), libbio-tools-run-alignment-clustalw-perl, libbio-featureio-perl, libbio-cluster-perl, libtest-requiresinternet-perl, libbio-eutilities-perl, libbio-tools-run-remoteblast-perl, default-jdk-headless, hyphy-pt | hyphy-mpi
Description:  BioPerl wrappers: scripts Contains scripts from the BioPerl-Run package. This package will also install all wrappable applications packaged in Debian. The ones that are not Free are "Suggested" by this package.
Package: bioperl (1.7.8-1)
Section: universe/science
Homepage: http://www.bioperl.org/
Depends: libbio-perl-perl (= 1.7.8-1), perl:any, libtest-most-perl
Description:  Perl tools for computational molecular biology The Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics into a set of standard CPAN-style, well-documented, and freely available Perl modules. It is well-accepted throughout the community and used in many high-profile projects, e.g., Ensembl. . The recommended packages are needed to run some of the included binaries, for a detailed explanation including the specific Perl modules please see README.Debian. . The suggested package enhances the manual pages.
Package: biosig-tools (2.3.3-1build2)
Section: universe/science
Homepage: https://biosig.sourceforge.io/
Depends: libbiosig3 (= 2.3.3-1build2), libb64-0d (>= 1.2), libc6 (>= 2.34)
Description:  format conversion tools for biomedical data formats Based on BioSig library, this package provides command line tools, such as .  - save2gdf: converter between different file formats, including but        not limited to SCP-ECG(EN1064), HL7aECG (FDA-XML), GDF, EDF,        BDF, CWFB.  - biosig2gdf: converts biosig data files into GDF, to simplify        parsing and loading by scripting languages (e.g. loadgdf.{py,r})  - rec2bin, bin2rec, heka2itx, save2aecg, save2scp: several converter       tools based on save2gdf  - biosig_fhir: packs biosignal data into HL7/FHIR binary template file.  - physicalunits: converter for encoding and decoding of physical       units according to ISO 11073-10101
Package: biosquid (1.9g+cvs20050121-12)
Section: universe/science
Homepage: http://eddylab.org/software.html
Depends: libc6 (>= 2.4), libsquid1 (= 1.9g+cvs20050121-12)
Description:  utilities for biological sequence analysis SQUID is a library of C code functions for sequence analysis. It also includes a number of small utility programs to convert, show statistics, manipulate and do other functions on sequence files. . The original name of the package is "squid", but since there is already a squid on the archive (a proxy cache), it was renamed to "biosquid". . This package contains some tools to demonstrate the features of the SQUID library.
Package: biosyntax-common (1.0.0b-2)
Section: universe/science
Homepage: https://biosyntax.org/
Description:  Syntax Highlighting for Computational Biology (common files) Syntax highlighting for computational biology to bring you intuitively close to your data. BioSyntax supports .sam, .flagstat, .vcf, .fasta, .fastq, .faidx , .clustal, .pdb, .gtf, .bed files & more. . This package provides common files of bioSyntax.
Package: biosyntax-example (1.0.0b-2)
Section: universe/science
Homepage: https://biosyntax.org/
Description:  Syntax Highlighting for Computational Biology (example) Syntax highlighting for computational biology to bring you intuitively close to your data. BioSyntax supports .sam, .flagstat, .vcf, .fasta, .fastq, .faidx , .clustal, .pdb, .gtf, .bed files & more. . This package provides example files for bioSyntax.