k3ylabs/cosoco-image-dataset huggingface dataset:
Package: topp (2.6.0+cleaned1-3build1)
Section: universe/science
Homepage: http://www.openms.de
Depends: libboost-regex1.74.0-icu70, libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libopenms2.6.0 (= 2.6.0+cleaned1-3build1), libqt5core5a (>= 5.15.1), libqt5gui5 (>= 5.11.3) | libqt5gui5-gles (>= 5.11.3), libqt5widgets5 (>= 5.11.3), libstdc++6 (>= 11), libxerces-c3.2, openms-common (= 2.6.0+cleaned1-3build1)
Description:  set of programs implementing The OpenMS Proteomic Pipeline TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis of HPLC/MS data. It consists of a set of numerous small applications that can be chained together to create analysis pipelines tailored for a specific problem. The applications make use of the libopenms library. Some examples of these applications are : .   - TOPPView: A viewer for mass spectrometry data.   - TOPPAS: An assistant for GUI-driven TOPP workflow design.   - DTAExtractor: Extracts spectra of an MS run file to several     files in DTA format.   - FileConverter:  Converts between different MS file formats.   - FileFilter: Extracts or manipulates portions of data from peak,     feature or consensus feature files.   - SpectraMerger: Merges spectra from an LC/MS map, either by     precursor or by RT blocks.   - BaselineFilter: Removes the baseline from profile spectra using a     top-hat filter.   - InternalCalibration: Applies an internal calibration.   - PTModel: Trains a model for the prediction of proteotypic     peptides from a training set.   - RTPredict: Predicts retention times for peptides using a model     trained by RTModel.   - ExecutePipeline: Executes workflows created by TOPPAS.
Package: toppic-common (1.3.0+dfsg1-4build1)
Section: universe/science
Homepage: http://proteomics.informatics.iupui.edu/software/toppic/index.html
Depends: fonts-font-awesome, fonts-freefont-ttf, libjs-filesaver, libjs-bootstrap4, libjs-popper.js, libjs-jquery-ui, node-jquery
Description:  Top-down proteoform identification and characterization (common data) The TopPIC Suite consists of four software tools for the interpretation of top-down mass spectrometry data: TopFD, TopPIC, TopMG, and TopDiff. .  -TopFD (Top-down mass spectral Feature Detection) is a software tool    for top-down spectral deconvolution and a successor to MS-Deconv.  It    groups top-down spectral peaks into isotopomer envelopes and converts    isotopomer envelopes to monoisotopic neutral masses. In addition, it    extracts proteoform features from LC-MS or CE-MS data. .  -TopPIC (Top-down mass spectrometry based Proteoform Identification    and Characterization) identifies and characterizes proteoforms at the    proteome level by searching top-down tandem mass spectra against a    protein sequence database. TopPIC is a successor to MS-Align+. It    efficiently identifies proteoforms with unexpected alterations, such    as mutations and post-translational modifications (PTMs), accurately    estimates the statistical significance of identifications, and    characterizes reported proteoforms with unknown mass shifts. It uses    several techniques, such as indexes, spectral alignment, generation    function methods, and the modification identification score (MIScore),    to increase the speed, sensitivity, and accuracy. .  -TopMG (Top-down mass spectrometry based proteoform identification    using Mass Graphs) is a software tool for identifying ultra-modified    proteoforms by searching top-down tandem mass spectra against a    protein sequence database.  It is capable of identifying proteoforms    with multiple variable PTMs and unexpected alterations, such as    histone proteoforms and phosphorylated ones.  It uses mass graphs,    which efficiently represent candidate proteoforms with multiple    variable PTMs, to increase the speed and sensitivity in proteoform    identification. In addition, approximate spectrum-based filtering    methods are employed for protein sequence filtering, and a Markov    chain Monte Carlo method (TopMCMC) is used for estimating the    statistical significance of identifications. .  -TopDiff (Top-down mass spectrometry-based identification of    Differentially expressed proteoforms) compares the abundances of    proteoforms and finds differentially expressed proteoforms by using    identifications of top-down mass spectrometry data of several protein    samples. . This package ships common data used by the various program in the toppic package.
Package: toppic (1.3.0+dfsg1-4build1)
Section: universe/science
Homepage: http://proteomics.informatics.iupui.edu/software/toppic/index.html
Depends: libboost-filesystem1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libboost-thread1.74.0 (>= 1.74.0), libc6 (>= 2.29), libgcc-s1 (>= 3.0), libhts3 (>= 1.10), libpwizlite3 (>= 3.0.3), libqt5core5a (>= 5.15.1), libqt5gui5 (>= 5.0.2) | libqt5gui5-gles (>= 5.0.2), libqt5widgets5 (>= 5.2.0~alpha1), libstdc++6 (>= 9), libxerces-c3.2, toppic-common (= 1.3.0+dfsg1-4build1)
Description:  Top-down proteoform identification and characterization (programs) The TopPIC Suite consists of four software tools for the interpretation of top-down mass spectrometry data: TopFD, TopPIC, TopMG, and TopDiff. .  -TopFD (Top-down mass spectral Feature Detection) is a software tool    for top-down spectral deconvolution and a successor to MS-Deconv.  It    groups top-down spectral peaks into isotopomer envelopes and converts    isotopomer envelopes to monoisotopic neutral masses. In addition, it    extracts proteoform features from LC-MS or CE-MS data. .  -TopPIC (Top-down mass spectrometry based Proteoform Identification    and Characterization) identifies and characterizes proteoforms at the    proteome level by searching top-down tandem mass spectra against a    protein sequence database. TopPIC is a successor to MS-Align+. It    efficiently identifies proteoforms with unexpected alterations, such    as mutations and post-translational modifications (PTMs), accurately    estimates the statistical significance of identifications, and    characterizes reported proteoforms with unknown mass shifts. It uses    several techniques, such as indexes, spectral alignment, generation    function methods, and the modification identification score (MIScore),    to increase the speed, sensitivity, and accuracy. .  -TopMG (Top-down mass spectrometry based proteoform identification    using Mass Graphs) is a software tool for identifying ultra-modified    proteoforms by searching top-down tandem mass spectra against a    protein sequence database.  It is capable of identifying proteoforms    with multiple variable PTMs and unexpected alterations, such as    histone proteoforms and phosphorylated ones.  It uses mass graphs,    which efficiently represent candidate proteoforms with multiple    variable PTMs, to increase the speed and sensitivity in proteoform    identification. In addition, approximate spectrum-based filtering    methods are employed for protein sequence filtering, and a Markov    chain Monte Carlo method (TopMCMC) is used for estimating the    statistical significance of identifications. .  -TopDiff (Top-down mass spectrometry-based identification of    Differentially expressed proteoforms) compares the abundances of    proteoforms and finds differentially expressed proteoforms by using    identifications of top-down mass spectrometry data of several protein    samples.
Package: toppler (1.3-1)
Section: universe/games
Homepage: https://gitlab.com/roever/toppler/
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libsdl2-2.0-0 (>= 2.0.12), libsdl2-mixer-2.0-0 (>= 2.0.2), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4)
Description:  clone of the "Nebulus" game on old 8 and 16 bit machines Toppler is an almost complete reimplementation of the old game known as Tower Toppler or Nebulus. . The target of the game is to reach the target door of each of the  8 towers in currently 2 missions with this little green animal. This door is usually at the very top of the tower. . But finding the way by using elevators and walking through a maze of doors and platforms is not the only problem you have to solve. There are a bunch of other creatures living on the tower that will hinder you to reach your target by pushing you over the edge of the platforms.
Package: topplot (0.1.9+repack-1)
Section: universe/utils
Homepage: https://gitlab.com/eBardie/topplot/
Depends: python3:any, python3-topplot
Description:  Munge logs from top in to useful graphs topplot produces graphs of information it munges from top logs. It can select which processes to focus on, and it can split out information by cpu core (if top was configured to record the cpu core column, and/or display the cpu summary info by core). topplot can save the graphs as PNG files. It can also print information derived from the logs to stdout, with or without emitting the graphs. There may be better, more efficient ways of collecting live system information, but if for some reason you've hundreds of thousands of lines of top logs and you want to see what's in them, topplot can help.
Package: toppred (1.10-9)
Section: universe/science
Homepage: https://github.com/bioinfo-center-pasteur-fr/toppred
Depends: libc6 (>= 2.34), libgd3 (>= 2.1.0~alpha~)
Description:  transmembrane topology prediction Toppred is a program to determine the topology of a transmembrane protein based on G. von Heijne algorithm. . Each sequence from seq data in fasta format is processed, and toppred generate the Hydrophobycity profile of the sequence, and the corresponding hydrophobycities values in the file sequence-ID.hydro. . Furthermore, the predicted topologies are represented as png images. Each topology is stored in file sequence-ID-number.png . The hydrophobicity profile is computed using a window formed by a core rectangular window of size n, flanked by 2 triangular windows of size q. NB rectangular and triangular mean that the ponderation values inside those windows are respectively constant and variable. . This program is a new implementation of the original toppred program, based on G. von Heijne algorithm
Package: topydo (0.14-5)
Section: universe/text
Homepage: https://github.com/topydo/topydo
Depends: python3-arrow, python3:any
Description:  advanced todo.txt terminal utility for managing tasks The Todo.txt project defines a format for supporting context-rich tasking in a plain text file. It supports an ecosystem of tools which allow working with tasks across hosts and operating systems. . This package installs a more advanced version of the command-line tool for working with todo.txt tasking files.
Package: tor-arm (2.1.0-2.1)
Section: universe/comm
Homepage: https://nyx.torproject.org
Depends: nyx
Description:  transitional package This is a transitional package. It can safely be removed.
Package: tor-geoipdb (0.4.6.10-1)
Section: universe/net
Homepage: https://www.torproject.org/
Depends: tor (>= 0.4.6.10-1)
Description:  GeoIP database for Tor This package provides a GeoIP database for Tor, i.e. it maps IPv4 addresses to countries. . Bridge relays (special Tor relays that aren't listed in the main Tor directory) use this information to report which countries they see connections from.  These statistics enable the Tor network operators to learn when certain countries start blocking access to bridges. . Clients can also use this to learn what country each relay is in, so Tor controllers like arm or Vidalia can use it, or if they want to configure path selection preferences.
Package: tor (0.4.6.10-1)
Section: universe/net
Homepage: https://www.torproject.org/
Depends: libc6 (>= 2.34), libcap2 (>= 1:2.10), libevent-2.1-7 (>= 2.1.8-stable), liblzma5 (>= 5.1.1alpha+20120614), libseccomp2 (>= 0.0.0~20120605), libssl3 (>= 3.0.0~~alpha1), libsystemd0, libzstd1 (>= 1.4.0), zlib1g (>= 1:1.1.4), adduser, lsb-base
Description:  anonymizing overlay network for TCP Tor is a connection-based low-latency anonymous communication system. . Clients choose a source-routed path through a set of relays, and negotiate a "virtual circuit" through the network, in which each relay knows its predecessor and successor, but no others. Traffic flowing down the circuit is decrypted at each relay, which reveals the downstream relay. . Basically, Tor provides a distributed network of relays. Users bounce their TCP streams (web traffic, ftp, ssh, etc) around the relays, and recipients, observers, and even the relays themselves have difficulty learning which users connected to which destinations. . This package enables only a Tor client by default, but it can also be configured as a relay and/or a hidden service easily. . Client applications can use the Tor network by connecting to the local socks proxy interface provided by your Tor instance. If the application itself does not come with socks support, you can use a socks client such as torsocks. . Note that Tor does no protocol cleaning on application traffic. There is a danger that application protocols and associated programs can be induced to reveal information about the user. Tor depends on Torbutton and similar protocol cleaners to solve this problem. For best protection when web surfing, the Tor Project recommends that you use the Tor Browser Bundle, a standalone tarball that includes static builds of Tor, Torbutton, and a modified Firefox that is patched to fix a variety of privacy bugs.
Package: torbrowser-launcher (0.3.3-6ubuntu1.22.04.1)
Section: universe/python
Homepage: https://github.com/micahflee/torbrowser-launcher
Depends: python3:any, ca-certificates, gnupg, libdbus-glib-1-2, python3-gpg, python3-packaging, python3-pyqt5, python3-requests, python3-socks
Description:  helps download and run the Tor Browser Bundle Tor Browser Launcher is intended to make the Tor Browser Bundle (TBB) easier to maintain and use for GNU/Linux users. torbrowser-launcher handles downloading the most recent version of TBB for you, in your language and for your architecture. It also adds a "Tor Browser" application launcher to your operating system's menu. . When you first launch Tor Browser Launcher, it will download TBB from https://www.torproject.org/ and extract it to ~/.local/share/torbrowser, and then execute it. Cache and configuration files will be stored in ~/.cache/torbrowser and ~/.config/torbrowser. Each subsequent execution after installation will simply launch the most recent TBB, which is updated using Tor Browser's own update feature.
Package: torcs-data (1.3.7+dfsg-5)
Section: universe/games
Homepage: http://torcs.org
Description:  data files for TORCS TORCS, The Open Racing Car Simulator, is a car racing simulation game which allows you to drive in races against opponents simulated by the computer. . This package includes all data files for the game including cars and tracks.
Package: torcs (1.3.7+dfsg-5)
Section: universe/games
Homepage: http://torcs.org
Depends: torcs-data (>= 1.3.7+dfsg), freeglut3 (>= 2.8.1), libalut0 (>= 1.0.1), libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgl1, libglu1-mesa | libglu1, libopenal1 (>= 1.14), libplib1, libpng16-16 (>= 1.6.2-1), libstdc++6 (>= 5), libvorbisfile3 (>= 1.2.0), libxrandr2
Description:  3D racing cars simulator game using OpenGL TORCS, The Open Racing Car Simulator, is a car racing simulation game which allows you to drive in races against opponents simulated by the computer. . You can also develop your own computer-controlled driver (also called a robot) in C or C++.
Package: torrus-common (3.00-1.1)
Section: universe/net
Homepage: http://torrus.org/
Depends: adduser, rrdtool, perl, redis, libredis-fast-perl, libgit-objectstore-perl, libjson-perl, libcache-ref-perl, libxml-libxml-perl, libnet-snmp-perl, libproc-daemon-perl, librrds-perl, libcgi-fast-perl, libapache-session-perl, libtemplate-perl, libtimedate-perl
Description:  Universal front-end for Round-Robin Databases (common files) Core part of the Torrus suite, providing support files needed by the other Torrus packages. It can be installed directly and used with any FastCGI-compatible webserver package. . Torrus is designed to be a universal front-end framework for Round-Robin Databases using Tobias Oetiker's RRDtool. It may be configured to collect and monitor arbitrary data series from various data sources which can in turn be displayed on a web page. . One of the traditional applications of this functionality is the collection and visualization of network information using the Simple Network Management Protocol (SNMP) from SNMP-enabled devices. . You will need to install libcrypt-des-perl and libdigest-hmac-perl for SNMPv3 support. SNMP over IPv6-transport is also supported after installing libio-socket-inet6-perl. . Torrus has been formerly known as rrfw, round-robin database framework.
Package: torsocks (2.3.0-3)
Section: universe/net
Homepage: https://gitweb.torproject.org/torsocks.git
Depends: libc6 (>= 2.15)
Description:  use SOCKS-friendly applications with Tor Torsocks allows you to redirect network traffic of individual SOCKS-friendly applications through the Tor network. It also ensures DNS queries are handled correctly and explicitly blocks all UDP traffic from the application in question. It is possible that a given application can leak user/system data at a level that neither Tor nor torsocks can control, a 100% guarantee of being safe to operate with Tor can not be given for applications.
Package: tortoisehg-caja (6.1.1-1)
Section: universe/vcs
Homepage: https://tortoisehg.bitbucket.io
Depends: mate-icon-theme | gnome-icon-theme-full | gnome-icon-theme, python3-gi, python3-caja (>= 1.1-2), tortoisehg (>= 6.1.1-1)
Description:  Graphical tool for working with Mercurial (Caja extension) TortoiseHg provides a graphical tool for interacting with the distributed revision control system Mercurial.  GUI support is provided for over a dozen operations, including add files, commit changes, manage ignore filter, view change log, merge, recover/rollback, edit configuration, synchronize repository, and many others.   The highlight is the interactive commit tool which allows easy selection of diffs from multiple files and packaging into changesets, and which is more powerful and easier to use than available alternatives such as qct and hgct (commit-tool). . This package contains the Caja extension for TortoiseHg.
Package: tortoisehg-nautilus (6.1.1-1)
Section: universe/vcs
Homepage: https://tortoisehg.bitbucket.io
Depends: gnome-icon-theme-full | gnome-icon-theme, python3-gi, python3-nautilus (>= 1.1-2), tortoisehg (>= 6.1.1-1)
Description:  Graphical tool for working with Mercurial (Nautilus extension) TortoiseHg provides a graphical tool for interacting with the distributed revision control system Mercurial.  GUI support is provided for over a dozen operations, including add files, commit changes, manage ignore filter, view change log, merge, recover/rollback, edit configuration, synchronize repository, and many others.   The highlight is the interactive commit tool which allows easy selection of diffs from multiple files and packaging into changesets, and which is more powerful and easier to use than available alternatives such as qct and hgct (commit-tool). . This package contains the Nautilus extension for TortoiseHg.
Package: tortoisehg (6.1.1-1)
Section: universe/vcs
Homepage: https://tortoisehg.bitbucket.io
Depends: mercurial (>= 6.1~), mercurial (<< 6.2~), python3-pyqt5, python3-pyqt5.qsci, python3:any
Description:  Graphical tool for working with Mercurial TortoiseHg provides a graphical tool for interacting with the distributed revision control system Mercurial.  GUI support is provided for over a dozen operations, including add files, commit changes, manage ignore filter, view change log, merge, recover/rollback, edit configuration, synchronize repository, and many others.   The highlight is the interactive commit tool which allows easy selection of diffs from multiple files and packaging into changesets, and which is more powerful and easier to use than available alternatives such as qct and hgct (commit-tool).
Package: tortoize (2.0.5-2)
Section: universe/science
Homepage: https://github.com/PDB-REDO/tortoize
Depends: libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.34), libcifpp2 (>= 2.0.4), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 11), libzeep5.1 (>= 5.1.7)
Description:  Application to calculate ramachandran z-scores Tortoize validates protein structure models by checking the Ramachandran plot and side-chain rotamer distributions. Quality Z-scores are given at the residue level and at the model level (ramachandran-z and torsions-z). Higher scores are better. To compare models or to describe the reliability of the model Z-scores jackknife- based standard deviations are also reported (ramachandran-jackknife-sd and torsion-jackknife-sd).
Package: torus-trooper-data (0.22.dfsg1-12build5)
Section: universe/games
Homepage: http://www.asahi-net.or.jp/~cs8k-cyu/windows/tt_e.html
Description:  speeding ship sailing through barrage - game data Torus Trooper is a fast-paced abstract scrolling shooter game. It features 3D graphics and a style similar to that of games such as Tempest. . This package includes the architecture-independent data for Kenta Cho's game Torus Trooper.
Package: torus-trooper (0.22.dfsg1-12build5)
Section: universe/games
Homepage: http://www.asahi-net.or.jp/~cs8k-cyu/windows/tt_e.html
Depends: torus-trooper-data (= 0.22.dfsg1-12build5), libbulletml0v5, libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libgl1, libglu1-mesa | libglu1, libgphobos2 (>= 11), libsdl-mixer1.2, libsdl1.2debian (>= 1.2.11)
Description:  speeding ship sailing through barrage Torus Trooper is a fast-paced abstract scrolling shooter game. It features 3D graphics and a style similar to that of games such as Tempest. . Torus Trooper is another gem among many by Kenta Cho.
Package: totalopenstation (0.5.2-3)
Section: universe/utils
Homepage: https://tops.iosa.it/
Depends: python3-tk, python3-pygeoif, python3-serial, python3:any
Description:  download and process data from total station devices Total Open Station (TOPS for friends) is a free software program for downloading and processing data from total station devices. . This is a task which is usually done by proprietary, dedicated and Windows™-only software, but TOPS is different by nature, because: .  - it is free software released under the GNU GPLv3 license;  - it works on any operating system, including mobile platforms like OpenMoko;  - it is designed to support as many devices and formats as possible,    all within the same program, opposed to having one program per device. . Every model has its own quirks, but TOPS uses a modular structure and keeps the downloading of data logically separated from its processing, thus enabling exporting data to a variety of output formats, even at a later moment. Archiving of raw data is made easy by using plain text files.
Package: totem-common (42.0-1ubuntu1)
Section: gnome
Homepage: https://wiki.gnome.org/Apps/Videos
Depends: dconf-gsettings-backend | gsettings-backend
Description:  Data files for the Totem media player Totem is a simple yet featureful media player for GNOME which can read a large number of file formats. . This package contains common data files and translations.