k3ylabs/cosoco-image-dataset huggingface dataset:
Package: atop (2.7.1-1)
Section: universe/admin
Homepage: https://atoptool.nl/
Depends: libc6 (>= 2.34), libncursesw6 (>= 6), libtinfo6 (>= 6), zlib1g (>= 1:1.1.4), lsb-base (>= 3.2-14)
Description:  Monitor for system resources and process activity Atop is an ASCII full-screen performance monitor, similar to the top command, but atop only shows the active system-resources and processes, and only shows the deviations since the previous interval.  At regular intervals, it shows system-level activity related to the CPU, memory, swap, disks and network layers, and it shows for every active process the CPU utilization in system and user mode, the virtual and resident memory growth, priority, username, state, and exit code. The process level activity is also shown for processes which finished during the last interval, to get a complete overview about the consumers of things such as CPU time. .  Author: Gerlof Langeveld <gerlof@ATComputing.nl>
Package: atril-common (1.26.0-1ubuntu1)
Section: universe/x11
Homepage: https://mate-desktop.org/
Description:  MATE document viewer (common files) Atril is a simple multi-page document viewer.  It can display and print PostScript (PS), Encapsulated PostScript (EPS), DJVU, DVI and Portable Document Format (PDF) files. . This package contains the architecture independent files.
Package: atril (1.26.0-1ubuntu1)
Section: universe/x11
Homepage: https://mate-desktop.org/
Depends: atril-common (>= 1.26.0-1ubuntu1), libatrildocument3 (= 1.26.0-1ubuntu1), libatrilview3 (= 1.26.0-1ubuntu1), shared-mime-info, dconf-gsettings-backend | gsettings-backend, libatk1.0-0 (>= 1.12.4), libc6 (>= 2.34), libcaja-extension1 (>= 1.18), libgdk-pixbuf-2.0-0 (>= 2.22.0), libglib2.0-0 (>= 2.61.2), libgtk-3-0 (>= 3.21.5), libice6 (>= 1:1.0.0), libsecret-1-0 (>= 0.7), libsm6, libxml2 (>= 2.7.4)
Description:  MATE document viewer Atril is a simple multi-page document viewer.  It can display and print PostScript (PS), Encapsulated PostScript (EPS), DJVU, DVI and Portable Document Format (PDF) files. . When supported by the document, it also allows searching for text, copying text to the clipboard, hypertext navigation, and table-of-contents bookmarks.
Package: atropos (1.1.29+dfsg-1ubuntu1)
Section: universe/science
Homepage: https://github.com/jdidion/atropos
Depends: libc6 (>= 2.4), cython3, python3 (<< 3.11), python3 (>= 3.10~), python3:any, python3-pysam
Description:  NGS read trimming tool that is specific, sensitive, and speedy Atropos is tool for specific, sensitive, and speedy trimming of NGS reads. It is a fork of the venerable Cutadapt read trimmer, with the primary improvements being: .   1. Multi-threading support, including an extremely fast "parallel      write" mode.   2. Implementation of a new insert alignment-based trimming algorithm      for paired-end reads that is substantially more sensitive and      specific than the original Cutadapt adapter alignment-based      algorithm. This algorithm can also correct mismatches between the      overlapping portions of the reads.   3. Options for trimming specific types of data (miRNA, bisulfite-seq).   4. A new command ('detect') that will detect adapter sequences and      other potential contaminants.   5. A new command ('error') that will estimate the sequencing error      rate, which helps to select the appropriate adapter- and quality-      trimming parameter values.   6. A new command ('qc') that generates read statistics similar to      FastQC. The trim command can also compute read statistics both      before and after trimming (using the '--stats' option).   7. Improved summary reports, including support for serialization      formats (JSON, YAML, pickle), support for user-defined templates      (via the optional Jinja2 dependency), and integration with MultiQC.   8. The ability to merge overlapping reads (this is experimental and      the functionality is limited).   9. The ability to write the summary report and log messages to      separate files.  10. The ability to read SAM/BAM files and read/write interleaved      FASTQ files.  11. Direct trimming of reads from an SRA accession.  12. A progress bar, and other minor usability enhancements.
Package: ats2-lang (0.4.2-1)
Section: universe/devel
Homepage: http://www.ats-lang.org/
Depends: libc6 (>= 2.34), libgc-dev
Description:  ATS version 2 programming language compiler ATS2 a.k.a. ATS/Postiats is a programming language with a highly expressive type system rooted in the framework Applied Type System. In particular, both dependent types and linear types are available in ATS. The current implementation of ATS (ATS/Postiats) is written in ATS (ATS/Anairiats) itself. It can be as efficient as C/C++ and supports a variety of programming paradigms. . In addition, ATS contains a component ATS/LF that supports a form of (interactive) theorem proving, where proofs are constructed as total functions. With this component, ATS advocates a programming style that combines programming with theorem proving. Furthermore, this component may be used as a logical framework to encode various deduction systems and their (meta-)properties. . This package contains the compiler patsopt and the frontend patscc.
Package: attr (1:2.5.1-1build1)
Section: utils
Homepage: https://savannah.nongnu.org/projects/attr/
Depends: libattr1 (= 1:2.5.1-1build1), libc6 (>= 2.34)
Description:  utilities for manipulating filesystem extended attributes A set of tools for manipulating extended attributes on filesystem objects, in particular getfattr(1) and setfattr(1). An attr(1) command is also provided which is largely compatible with the SGI IRIX tool of the same name.
Package: aubio-tools (0.4.9-4.1build2)
Section: universe/sound
Homepage: https://aubio.org
Depends: python3-aubio (= 0.4.9-4.1build2), libaubio5 (>= 0.4.8), libc6 (>= 2.34), libjack-jackd2-0 (>= 1.9.10+20150825) | libjack-0.125, python3:any
Description:  library for audio segmentation -- utilities aubio gathers a set of functions for audio signal segmentation and labelling. The library contains a phase vocoder, onset and pitch detection functions, a beat tracking algorithm and other sound processing utilities. . This package provides command line tools to run the different algorithms.
Package: auctex (12.2-1ubuntu1)
Section: universe/tex
Homepage: https://www.gnu.org/software/auctex/
Depends: emacs, emacsen-common (>= 3.0.0), preview-latex-style, procps, debconf (>= 0.5) | debconf-2.0
Description:  integrated document editing environment for TeX etc. AUCTeX is a comprehensive customizable integrated environment for writing input files for TeX/LaTeX/ConTeXt/Texinfo using GNU Emacs.  Currently XEmacs ships with its own AUCTeX version. . It supports processing source files by running TeX and related tools (such as output filters, post processors for generating indices and bibliographies, and viewers) from inside Emacs.  AUCTeX allows browsing through the errors reported by TeX, while it moves the cursor directly to the reported error, and displays some documentation for that particular error.  This will even work when the document is spread over several files. . AUCTeX can automatically indent LaTeX source, either line by line or for an entire document, and has a special outline feature which can greatly assist in getting an overview of a document. . AUCTeX is written entirely in Emacs Lisp, and may therefore be enhanced with new features for specific needs.  It comes with a large range of handy Emacs macros.  It is a GNU project, and documentation for all its features is accessible via the Emacs info browser.
Package: audacious-dev (4.1-2)
Section: universe/libs
Homepage: https://www.audacious-media-player.org/
Depends: libaudcore5 (= 4.1-2), libaudgui5 (= 4.1-2), libaudtag3 (= 4.1-2), libaudqt2 (= 4.1-2), libglib2.0-dev, libgtk2.0-dev, qtbase5-dev
Description:  audacious development files Audacious is a fork of beep-media-player which supports Winamp skins and many codecs. . In the default install, the following codecs are supported: .  * MP3  * Ogg Vorbis / Theora  * AAC and AAC+  * FLAC  * ALAC  * Windows Media (WMA)  * WAVE . Additionally, Audacious is extendable through plugins, and contains other useful features like LIRC support. Support for many more codecs can also be added through plugins. . This package contains the development libraries and header files required for developing components for audacious. . Please note that this package no longer contains libaudacious, as libaudacious was dropped in Audacious 1.4.
Package: audacious-plugins-data (4.1-2build3)
Section: universe/sound
Homepage: https://www.audacious-media-player.org/
Description:  Data files for Audacious plugins Audacious is a fork of beep-media-player which supports winamp skins and many codecs. . This package contains internationalized messages and skins for Audacious plugins.
Package: audacious-plugins (4.1-2build3)
Section: universe/sound
Homepage: https://www.audacious-media-player.org/
Depends: audacious-plugins-data (>= 4.1-2build3), libasound2 (>= 1.0.16), libaudcore5 (>= 4.1), libaudgui5 (>= 4.0), libaudqt2 (>= 4.1), libaudtag3 (>= 3.8), libavcodec58 (>= 7:4.4), libavformat58 (>= 7:4.4), libavutil56 (>= 7:4.4), libbs2b0, libc6 (>= 2.34), libcairo2 (>= 1.2.4), libcddb2 (>= 1.3.2), libcdio-cdda2 (>= 10.2+2.0.0), libcdio19 (>= 2.1.0), libcue2, libcurl3-gnutls (>= 7.16.2), libfaad2 (>= 2.7), libflac8 (>= 1.3.0), libfluidsynth3 (>= 2.0.5), libgcc-s1 (>= 3.3.1), libgdk-pixbuf-2.0-0 (>= 2.22.0), libgl1, libglib2.0-0 (>= 2.37.3), libgtk2.0-0 (>= 2.24.0), libjack-jackd2-0 (>= 1.9.10+20150825) | libjack-0.125, liblirc-client0, libmms0 (>= 0.4), libmodplug1 (>= 1:0.8.8.5), libmp3lame0 (>= 3.100), libmpg123-0 (>= 1.28.0), libneon27-gnutls, libnotify4 (>= 0.7.0), libogg0 (>= 1.1.0), libopenmpt0 (>= 0.3.0), libpango-1.0-0 (>= 1.22.0), libpangocairo-1.0-0 (>= 1.14.0), libpulse0 (>= 0.99.1), libqt5core5a (>= 5.15.1), libqt5gui5 (>= 5.1.0), libqt5gui5 (>= 5.14.1) | libqt5gui5-gles (>= 5.14.1), libqt5multimedia5 (>= 5.6.0~beta), libqt5widgets5 (>= 5.15.1), libsamplerate0 (>= 0.1.7), libsdl2-2.0-0 (>= 2.0.12), libsidplayfp6 (>= 2.3.1), libsndfile1 (>= 1.0.20), libsndio7.0 (>= 1.8.1), libsoxr0 (>= 0.1.0), libstdc++6 (>= 12), libvorbis0a (>= 1.2.0), libvorbisenc2 (>= 1.1.2), libvorbisfile3 (>= 1.1.2), libwavpack1 (>= 4.40.0), libx11-6, libxcomposite1 (>= 1:0.4.5), libxml2 (>= 2.7.4), libxrender1, zlib1g (>= 1:1.1.4)
Description:  Base plugins for audacious Audacious is a fork of beep-media-player which supports winamp skins and many codecs. . In the default install, the following codecs are supported: .  * MP3  * Ogg Vorbis  * AAC and AAC+  * FLAC  * Windows Media (WMA)  * Many module formats and much more! . Additionally, Audacious is extendable through plugins, and contains other useful features like LIRC support. . This package contains the plugins for Audacious.  * Audio CD reading  * MPEG support (mp3)  * Ogg Vorbis support  * Windows Media support (WMA)  * AAC support  * FLAC support  * ALAC support  * WAVE support  * ALSA output  * OSS output  * Disk writer output  * And many more!
Package: audacious (4.1-2)
Section: universe/sound
Homepage: https://www.audacious-media-player.org/
Depends: audacious-plugins (>= 4.1), default-dbus-session-bus | dbus-session-bus | dbus-x11, gtk2-engines-pixbuf, libaudcore5 (= 4.1-2), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libglib2.0-0 (>= 2.37.3), libstdc++6 (>= 11)
Description:  small and fast audio player which supports lots of formats Audacious is a fork of beep-media-player which supports Winamp skins and many codecs. . In the default install, the following codecs are supported: .  * MP3  * Ogg Vorbis / Theora  * AAC and AAC+  * FLAC  * ALAC  * Windows Media (WMA)  * WAVE . Additionally, Audacious is extendable through plugins, and contains other useful features like LIRC support. Support for many more codecs can also be added through plugins. . This package contains the core player and its localization.
Package: audacity-data (2.4.2~dfsg0-5)
Section: universe/sound
Homepage: https://www.audacityteam.org/
Description:  fast, cross-platform audio editor (data) Audacity is a multi-track audio editor for Linux/Unix, MacOS and Windows.  It is designed for easy recording, playing and editing of digital audio.  Audacity features digital effects and spectrum analysis tools.  Editing is very fast and provides unlimited undo/redo. . This package contains the architecture-independent data files.
Package: audacity (2.4.2~dfsg0-5)
Section: universe/sound
Homepage: https://www.audacityteam.org/
Depends: audacity-data (= 2.4.2~dfsg0-5), libavcodec58 (>= 7:4.0), libavformat58 (>= 7:4.2), libavutil56 (>= 7:4.0), libc6 (>= 2.33), libexpat1 (>= 2.0.1), libflac++6v5 (>= 1.3.1), libflac8 (>= 1.3.0), libgcc-s1 (>= 3.3.1), libgdk-pixbuf-2.0-0 (>= 2.22.0), libglib2.0-0 (>= 2.12.0), libgtk-3-0 (>= 3.9.10), libid3tag0 (>= 0.15.1b), liblilv-0-0 (>= 0.24.0~dfsg0), libmad0 (>= 0.15.1b-3), libogg0 (>= 1.0rc3), libportaudio2 (>= 19+svn20101113), libportsmf0v5, libsndfile1 (>= 1.0.20), libsoundtouch1 (>= 2.0.0), libsoxr0 (>= 0.1.1), libstdc++6 (>= 6), libsuil-0-0 (>= 0.8.0~dfsg0), libtwolame0 (>= 0.3.6), libvamp-hostsdk3v5 (>= 2.10.0), libvorbis0a (>= 1.3.3), libvorbisenc2 (>= 1.3.3), libvorbisfile3 (>= 1.3.3), libwxbase3.0-0v5 (>= 3.0.5.1+dfsg), libwxgtk3.0-gtk3-0v5 (>= 3.0.5.1+dfsg)
Description:  fast, cross-platform audio editor Audacity is a multi-track audio editor for Linux/Unix, MacOS and Windows.  It is designed for easy recording, playing and editing of digital audio.  Audacity features digital effects and spectrum analysis tools.  Editing is very fast and provides unlimited undo/redo. . Supported file formats include Ogg Vorbis, MP2, MP3, WAV, AIFF, and AU.
Package: audiofile-tools (0.3.6-5+deb10u1build0.22.04.1)
Section: universe/utils
Homepage: http://audiofile.68k.org/
Depends: libaudiofile1 (>= 0.3.6), libc6 (>= 2.34)
Description:  sfinfo and sfconvert tools The audiofile library allows the processing of audio data to and from audio files of many common formats (currently AIFF, AIFF-C, WAVE, NeXT/Sun, BICS, and raw data). . This package contains the sfinfo and sfconvert tools.
Package: audiolink (0.05-4)
Section: universe/sound
Homepage: http://audiolink.sourceforge.net/
Depends: default-mysql-client | virtual-mysql-client, libdbd-mysql-perl, libfile-temp-perl, libmp3-info-perl, libogg-vorbis-header-pureperl-perl, perl:any
Description:  makes managing and searching for music easier AudioLink is a tool that makes searching for music on your local storage media easier and faster. Your searches can include a variety of criteria, like male artists, female artists, band, genre, etc. . It works with MP3 and Ogg Vorbis files and creates a MySQL database in which it stores the information about the music files. It creates symbolic links to the actual music files based on the search results. You can search for multiple fields, like artist, band, composer, lyricist, etc.
Package: audiotools (3.1.1-1.1build10)
Section: universe/sound
Homepage: http://audiotools.sourceforge.net/
Depends: python3 (<< 3.11), python3 (>= 3.10~), python3:any, libasound2 (>= 1.0.16), libc6 (>= 2.33), libcdio-cdda2 (>= 10.2+2.0.0), libcdio-paranoia2 (>= 10.2+2.0.0), libcdio19 (>= 2.1.0), libmp3lame0 (>= 3.100), libmpg123-0 (>= 1.13.7), libopus0 (>= 1.1), libopusfile0 (>= 0.5), libpulse0 (>= 0.99.1), libtwolame0 (>= 0.3.6), libvorbisenc2 (>= 1.1.2), libvorbisfile3 (>= 1.2.0), libwavpack1 (>= 4.40.0)
Description:  Collection of audio handling programs for the command line These include programs for CD extraction, track conversion from one audio format to another, track renaming and retagging, track identification, CD burning from tracks, and more. Supports internationalized track filenames and metadata using Unicode. Works with high-definition, multi-channel audio as well as CD-quality. Track conversion uses multiple CPUs or CPU cores if available to greatly speed the transcoding process. Track metadata can be retrieved from FreeDB, MusicBrainz or compatible servers.
Package: audispd-plugins (1:3.0.7-1build1)
Section: universe/admin
Homepage: https://people.redhat.com/sgrubb/audit/
Depends: auditd (= 1:3.0.7-1build1), libauparse0 (= 1:3.0.7-1build1), libc6 (>= 2.34), libcap-ng0 (>= 0.7.9), libgssapi-krb5-2 (>= 1.17), libkrb5-3 (>= 1.6.dfsg.2), libldap-2.5-0 (>= 2.5.4)
Description:  Plugins for the audit event dispatcher The audispd-plugins package provides plugins for the real-time interface to the audit system, audispd. These plugins can do things like relay events to remote machines or analyze events for suspicious behavior.
Package: auditd (1:3.0.7-1build1)
Section: admin
Homepage: https://people.redhat.com/sgrubb/audit/
Depends: libaudit1 (= 1:3.0.7-1build1), libauparse0 (= 1:3.0.7-1build1), lsb-base (>= 3.0-6), mawk | gawk, libc6 (>= 2.34), libcap-ng0 (>= 0.7.9)
Description:  User space tools for security auditing The audit package contains the user space utilities for storing and searching the audit records generated by the audit subsystem in the Linux 2.6 kernel. . Also contains the audit dispatcher "audisp".
Package: audmes (2021.11.04-2)
Section: universe/sound
Homepage: https://sourceforge.net/projects/audmes/
Depends: libasound2 (>= 1.0.16), libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libpulse0 (>= 0.99.1), libstdc++6 (>= 11), libwxbase3.0-0v5 (>= 3.0.5.1+dfsg), libwxgtk3.0-gtk3-0v5 (>= 3.0.5.1+dfsg)
Description:  AUDio MEasurement System Multi-platfrom system for audio measurement through sound card in the PC. Incorporates Generator, Oscilloscope, FFT, Sweep frequency characteristic. Useful for measuring stereo and speaker performance.
Package: audtty (0.1.12-5.1)
Section: universe/sound
Homepage: http://audtty.alioth.debian.org
Depends: libaudclient2 (>= 2.3), libc6 (>= 2.4), libdbus-glib-1-2 (>= 0.78), libglib2.0-0 (>= 2.35.9), libncursesw6 (>= 6), libtinfo6 (>= 6), audacious, dbus-x11
Description:  ncurses based frontend to audacious Audtty is an ncurses based terminal frontend to the Audacious Media Player. It is a fork of xmms-curses and is designed to be lightweight and intuitive to use. . Audtty makes it easy to control the Audacious Media Player from the command line whether locally or remotely.
Package: augeas-doc (1.13.0-1)
Section: universe/doc
Homepage: http://augeas.net/
Description:  Augeas lenses documentation Augeas parses configuration files described in lenses into a tree structure, which it exposes through its public API. Changes made through the API are written back to the initially read files. . Lenses are the building blocks of the file <-> tree transformation; they combine parsing a file and building the tree (the get transformation), with turning the tree back into an (updated) file (the put transformation). . This package contains the generated documentation for the lenses shipping in the augeas-lenses package.
Package: augeas-lenses (1.13.0-1)
Section: universe/misc
Homepage: http://augeas.net/
Description:  Set of lenses needed by libaugeas0 to parse config files Augeas parses configuration files described in lenses into a tree structure, which it exposes through its public API. Changes made through the API are written back to the initially read files. . Lenses are the building blocks of the file <-> tree transformation; they combine parsing a file and building the tree (the get transformation), with turning the tree back into an (updated) file (the put transformation). . The transformation works very hard to preserve comments and formatting details. It is controlled by ``lens'' definitions that describe the file format and the transformation into a tree. This package includes the official set of lenses.
Package: augeas-tools (1.13.0-1)
Section: universe/admin
Homepage: http://augeas.net/
Depends: libaugeas0 (>= 1.10.0), libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libreadline8 (>= 6.0)
Description:  Augeas command line tools Augeas is a configuration editing tool. It parses configuration files in their native formats and transforms them into a tree. Configuration changes are made by manipulating this tree and saving it back into native config files. . This package provides command line tools based on libaugeas0: - augtool, a tool to manage configuration files. - augparse, a testing and debugging tool for augeas lenses.
Package: augur (14.0.0-1)
Section: universe/science
Homepage: https://github.com/nextstrain/augur
Depends: python3-bcbio-gff, python3-biopython, python3-jsonschema, python3-networkx, python3-packaging, python3-pandas, python3-treetime, python3-xopen, python3:any, python3-boto3, python3-cvxopt, python3-dendropy, python3-matplotlib, python3-schedule, python3-seaborn, seqmagick, python3-ipdb, mafft, iqtree, raxml, fasttree, vcftools
Description:  pipeline components for real-time virus analysis The nextstrain project is an attempt to make flexible informatic pipelines and visualization tools to track ongoing pathogen evolution as sequence data emerges. The nextstrain project derives from nextflu, which was specific to influenza evolution. . nextstrain is comprised of three components: .   * fauna: database and IO scripts for sequence and serological data   * augur: informatic pipelines to conduct inferences from raw data   * auspice: web app to visualize resulting inferences
Package: augustus-data (3.4.0+dfsg2-3build1)
Section: universe/science
Homepage: https://bioinf.uni-greifswald.de/augustus/
Description:  data files for AUGUSTUS This package contains pre-trained species models and other required architecture-independent data files for the AUGUSTUS gene finder. These are needed to identify gene structures in these or related organisms.
Package: augustus-doc (3.4.0+dfsg2-3build1)
Section: universe/doc
Homepage: https://bioinf.uni-greifswald.de/augustus/
Description:  documentation files for AUGUSTUS This package contains documentation for AUGUSTUS: a comprehensive manual-style README both for AUGUSTUS in general as well as for its comparative gene prediction (cgp) mode, as well as a HTML tutorial.
Package: augustus (3.4.0+dfsg2-3build1)
Section: universe/science
Homepage: https://bioinf.uni-greifswald.de/augustus/
Depends: libbamtools2.5.1 (>= 2.5.1+dfsg), libboost-iostreams1.74.0 (>= 1.74.0), libc6 (>= 2.34), libcolamd2 (>= 1:4.5.2), libgcc-s1 (>= 3.3.1), libgsl27 (>= 2.7.1), libhts3 (>= 1.10), libmysql++3v5 (>= 3.2.5-1~), libmysqlclient21 (>= 8.0.11), libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 11), augustus-data
Description:  gene prediction in eukaryotic genomes AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences that is based on a generalized hidden Markov model (HMM), a probabilistic model of a sequence and its gene structure. After learning gene structures from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new sequence and annotates it with the regions of identified genes. External hints, e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide and improve the gene finding process. The result is the set of most likely gene structures that comply with all given user constraints, if such gene structures exist. AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts to train custom models using annotated genomes.
Package: aumix-common (2.9.1-7build1)
Section: universe/sound
Homepage: http://www.jpj.net/~trevor/aumix.html
Depends: oss-compat, lsb-base (>= 3.0-6)
Description:  Simple text-based mixer control program (common files) aumix is a small, easy-to-use program to control the mixer of your sound card. It runs in text mode using the ncurses library, or from the command line (non-interactively). It can read default settings from a file, and it can also automatically save and restore the mixer settings at shutdown and boot. . This package provides files common to aumix and aumix-gtk.