k3ylabs/cosoco-image-dataset huggingface dataset:
Package: sniffles (2.0.2-1)
Section: universe/science
Homepage: https://github.com/fritzsedlazeck/Sniffles
Depends: python3-pysam, python3:any
Description:  structural variation caller using third-generation sequencing Sniffles is a structural variation (SV) caller using third-generation sequencing data such as those from Pacific Biosciences or Oxford Nanopore platforms.  It detects all types of SVs using evidence from split-read alignments, high-mismatch regions, and coverage analysis.
Package: snimpy (1.0.0-1)
Section: universe/python
Homepage: https://github.com/vincentbernat/snimpy/
Depends: python3:any, python3-snimpy (>= 1.0.0-1), python3-snimpy (<< 1.0.0-1.1~)
Description:  interactive SNMP tool with Python Snimpy is a Python-based tool providing a simple interface to build SNMP queries. This interface aims at being the most Pythonic possible: you grab scalars using attributes and columns are like dictionaries. . Snimpy can either be used interactively through its console (derived from Python own console or from IPython if available) or by writing snimpy scripts which are just Python scripts with some global variables available.
Package: sniproxy (0.6.0-2ubuntu0.22.04.1)
Section: universe/web
Homepage: https://github.com/dlundquist/sniproxy
Depends: lsb-base, init-system-helpers (>= 1.51), libc6 (>= 2.34), libev4 (>= 1:4.04), libpcre3, libudns0 (>= 0.4)
Description:  Transparent TLS and HTTP layer 4 proxy with SNI support Proxies incoming HTTP and TLS connections based on the hostname contained in the initial request of the TCP session. This enables HTTPS name-based virtual hosting to separate backend servers without installing the private key on the proxy machine.
Package: snmp-mibs-downloader (1.5)
Section: multiverse/net
Homepage: https://salsa.debian.org/debian/snmp-mibs-downloader
Depends: wget, smistrip, patch
Description:  install and manage Management Information Base (MIB) files This package ships the IETF RFCs containing MIB files and a script which extracts them to be used by Simple Network Management libraries. The script can be used to update some MIBs to the latest version or to download extra vendor MIBs. . These MIBs can be useful for programs like wireshark or snmpget to enable them to translating the received information into human readable text.
Package: snmp (5.9.1+dfsg-1ubuntu2.6)
Section: net
Homepage: http://net-snmp.sourceforge.net/
Depends: libc6 (>= 2.34), libsnmp40 (= 5.9.1+dfsg-1ubuntu2.6), libssl3 (>= 3.0.0~~alpha1), libsnmp-base (>= 5.7.3+dfsg-5)
Description:  SNMP (Simple Network Management Protocol) applications The Simple Network Management Protocol (SNMP) provides a framework for the exchange of management information between agents (servers) and clients. . The Net-SNMP applications are a collection of command line clients for issuing SNMP requests to agents.
Package: snmpd (5.9.1+dfsg-1ubuntu2.6)
Section: net
Homepage: http://net-snmp.sourceforge.net/
Depends: libc6 (>= 2.34), libsnmp40 (= 5.9.1+dfsg-1ubuntu2.6), debconf (>= 0.5) | debconf-2.0, adduser, debconf, lsb-base (>= 3.2-13), libsnmp-base
Description:  SNMP (Simple Network Management Protocol) agents The Simple Network Management Protocol (SNMP) provides a framework for the exchange of management information between agents (servers) and clients. . The Net-SNMP agent is a daemon which listens for incoming SNMP requests from clients and provides responses.
Package: snmpsim (0.4.5-1)
Section: universe/net
Homepage: http://snmpsim.sourceforge.net/
Depends: python3-pysnmp4 (>= 4.2.4), python3:any, python3-pyasn1
Description:  SNMP agent simulator SNMP Simulator is a software that would act like a multitude of real physical devices from SNMP Manager's point of view. Simulator builds and uses a database of physical devices' SNMP footprints to respond like their real counterparts do. . Typical use case for this software starts with recording a snapshot of SNMP objects of donor agents into text files. Once you have your snapshots at hand, a simulator script could be run over the snapshots responding to SNMP queries in the same way as donor SNMP agents did at the time of recording. . Technically, SNMP Simulator is a multi-context SNMP agent. That means that it handles multiple sets of managed object all at once. Each device is simulated within a dedicated SNMP context.
Package: snmptrapd (5.9.1+dfsg-1ubuntu2.6)
Section: universe/net
Homepage: http://net-snmp.sourceforge.net/
Depends: libc6 (>= 2.34), libnetsnmptrapd40 (>= 5.9.1+dfsg), libsnmp40 (= 5.9.1+dfsg-1ubuntu2.6), libwrap0 (>= 7.6-4~), init-system-helpers (>= 1.51), snmpd
Description:  Net-SNMP notification receiver The Simple Network Management Protocol (SNMP) provides a framework for the exchange of management information between agents (servers) and clients. . snmptrapd is an SNMP application (daemon) that receives and logs SNMP TRAP and INFORM messages.
Package: snmptrapfmt (1.17)
Section: universe/net
Homepage: https://alioth.debian.org/projects/snmptrapfmt/
Depends: snmpd, libc6 (>= 2.15)
Description:  configurable snmp trap handler daemon for snmpd This package contains a configurable snmp trap handler daemon for snmpd. The output of this trap handler daemon may be specified via a configuration file and written to a logfile or to the syslog daemon. During installation of this package, the configuration file for the snmptrapd daemon is changed (old version is saved) to activate the trap handler. The snmpd and snmptrapd daemons are restarted.
Package: snmptt (1.5~beta2-1)
Section: universe/net
Homepage: http://www.snmptt.org/
Depends: adduser, libconfig-inifiles-perl, libsnmp-perl, snmptrapd
Description:  SNMP trap handler for use with snmptrapd SNMPTT (SNMP Trap Translator) is an SNMP trap handler written in Perl for use with the Net-SNMP / UCD-SNMP snmptrapd program (www.net-snmp.org).
Package: snoopy (2.4.15-1)
Section: universe/admin
Homepage: https://github.com/a2o/snoopy/
Depends: libc6 (>= 2.34), debconf (>= 0.5) | debconf-2.0
Description:  execve() wrapper and logger snoopy is merely a shared library that is used as a wrapper to the execve() function provided by libc as to log every call to syslog (authpriv).  system administrators may find snoopy useful in tasks such as light/heavy system monitoring, tracking other administrator's actions as well as getting a good 'feel' of what's going on in the system (for example Apache running cgi scripts). . This type of monitoring can be bypassed by hostile users, and should not be considered a secure replacement for tools like auditd.
Package: snooze (0.5-1)
Section: universe/utils
Homepage: https://git.vuxu.org/snooze/about/
Depends: libc6 (>= 2.4)
Description:  run a command at a particular time `snooze` is a tool for waiting until a particular time and then running a command.  Together with a service supervision system such as runit, this can be used to replace cron(8). . Benefits over cron:  - mnemonic syntax  - no overlapping job runs possible  - filtering by ISO week and day of year  - due to supervision, no centralized daemon required  - due to supervision, can easily disable jobs or force their    execution instantly  - due to supervision, have custom logs  - due to no centralized daemon, no fuzzing with multiple users/permissions  - very robust with respect to external time changes  - can use a file timestamp to ensure minimum waiting time between two    runs, even across reboots  - randomized delays (some cron have that)  - variable slack (no need for anacron)  - ad-hoc usage possible, just run the program from command line . Benefits over runwhen:  - less confusing usage (arguably)  - filtering by ISO week and day of year  - zero dependencies . Benefits over uschedule:  - no centralized daemon required  - filtering by ISO week and day of year
Package: snort-common-libraries (2.9.15.1-6build1)
Section: universe/net
Homepage: https://www.snort.org/
Depends: libc6 (>= 2.34), libluajit-5.1-2 (>= 2.0.4+dfsg), libpcre3, libssl3 (>= 3.0.0~~alpha1)
Description:  flexible Network Intrusion Detection System - libraries Snort is a libpcap-based packet sniffer/logger which can be used as a lightweight network intrusion detection system. It features rules-based logging and can perform content searching/matching in addition to detecting a variety of other attacks and probes, such as buffer overflows, stealth port scans, CGI attacks, SMB probes, and much more. Snort has a real-time alerting capability, with alerts being sent to syslog, a separate "alert" file, or even to a Windows computer via Samba. . This package provides libraries used by all the Snort binary packages.
Package: snort-common (2.9.15.1-6build1)
Section: universe/net
Homepage: https://www.snort.org/
Depends: perl, debconf (>= 0.5) | debconf-2.0, lsb-base
Description:  flexible Network Intrusion Detection System - common files Snort is a libpcap-based packet sniffer/logger which can be used as a lightweight network intrusion detection system. It features rules-based logging and can perform content searching/matching in addition to detecting a variety of other attacks and probes, such as buffer overflows, stealth port scans, CGI attacks, SMB probes, and much more. Snort has a real-time alerting capability, with alerts being sent to syslog, a separate "alert" file, or even to a Windows computer via Samba. . This is a common package which holds cron jobs, tools, and config files used by all the different package flavors.
Package: snort-doc (2.9.15.1-6build1)
Section: universe/doc
Homepage: https://www.snort.org/
Description:  flexible Network Intrusion Detection System - documentation Snort is a libpcap-based packet sniffer/logger which can be used as a lightweight network intrusion detection system. It features rules-based logging and can perform content searching/matching in addition to detecting a variety of other attacks and probes, such as buffer overflows, stealth port scans, CGI attacks, SMB probes, and much more. Snort has a real-time alerting capability, with alerts being sent to syslog, a separate "alert" file, or even to a Windows computer via Samba. . This package provides the documentation for Snort.
Package: snort-rules-default (2.9.15.1-6build1)
Section: universe/net
Homepage: http://www.snort.org/snort-rules/
Depends: debconf (>= 0.2.80) | debconf-2.0, adduser (>= 3.11)
Description:  flexible Network Intrusion Detection System - ruleset Snort is a libpcap-based packet sniffer/logger which can be used as a lightweight network intrusion detection system. It features rules-based logging and can perform content searching/matching in addition to detecting a variety of other attacks and probes, such as buffer overflows, stealth port scans, CGI attacks, SMB probes, and much more. Snort has a real-time alerting capability, with alerts being sent to syslog, a separate "alert" file, or even to a Windows computer via Samba. . This is the Snort default ruleset, which provides a basic set of network intrusion detection rules developed by the Snort community. They can be used as a basis for development of additional rules. Users using Snort to defend networks in production environments are encouraged to update their local rulesets as described in the included documentation or using the oinkmaster package.
Package: snort (2.9.15.1-6build1)
Section: universe/net
Homepage: https://www.snort.org/
Depends: snort-common-libraries (>= 2.9.15.1-6build1), snort-rules-default (>= 2.9.15.1-6build1), snort-common (>= 2.9.15.1-6build1), debconf (>= 0.5) | debconf-2.0, rsyslog | system-log-daemon, logrotate, net-tools, lsb-base, libc6 (>= 2.34), libdaq2 (>= 2.0.7), libdumbnet1 (>= 1.8), liblzma5 (>= 5.1.1alpha+20120614), libnetfilter-queue1 (>= 1.0.0), libnghttp2-14 (>= 1.5.0), libpcap0.8 (>= 1.0.0), libpcre3, libssl3 (>= 3.0.0~~alpha1), zlib1g (>= 1:1.1.4)
Description:  flexible Network Intrusion Detection System Snort is a libpcap-based packet sniffer/logger which can be used as a lightweight network intrusion detection system. It features rules-based logging and can perform content searching/matching in addition to detecting a variety of other attacks and probes, such as buffer overflows, stealth port scans, CGI attacks, SMB probes, and much more. Snort has a real-time alerting capability, with alerts being sent to syslog, a separate "alert" file, or even to a Windows computer via Samba. . This package provides the plain-vanilla version of Snort.
Package: snowball-data (0+20210120-1)
Section: universe/libs
Homepage: https://github.com/snowballstem/snowball-data
Description:  test data for Snowball stemming algorithms Snowball provides access to efficient algorithms for calculating a "stemmed" form of a word.  This is a form with most of the common morphological endings removed; hopefully representing a common linguistic base form.  This is most useful in building search engines and information retrieval software; for example, a search with stemming enabled should be able to find a document containing "cycling" given the query "cycles". . Snowball provides algorithms for several (mainly European) languages. It also provides access to the classic Porter stemming algorithm for English: although this has been superseded by an improved algorithm, the original algorithm may be of interest to information retrieval researchers wishing to reproduce results of earlier experiments. . This package contains the test data, which is used by Snowball test suite.
Package: snowdrop (0.02b-13)
Section: universe/utils
Homepage: http://lcamtuf.coredump.cx/
Depends: libc6 (>= 2.7), libgnutls-openssl27 (>= 3.6.11-0)
Description:  plain text watermarking and watermark recovery Snowdrop provides reliable, difficult to remove steganographic watermarking of text documents (internal memos, draft research papers, advisories and other writing) and C sources (limited distribution software, licensed software, or freely available code) so that:  (1) leaks can be identified if the data goes public.  (2) original source can be determined and demonstrated if part of the      document is claimed by somebody else, copied without permission, etc. Snowdrop uses redundant steganography using four different logical channels, and should be proof to many modifications, including reformatting, spell checking and so on. . This package is useful in forensic investigations and security actions. It provides three commands: sd-eng, sd-engf and sd-c. sd-eng and sd-engf provide watermarking for draft-quality and fine-quality English language text documents, respectively, whereas sd-c provides experimental C source code watermarking. . Warning: Snowdrop is currently in beta, and may produce bad or corrupted results, especially when run on C source code.
Package: snowflake-client (1.1.0-2)
Section: universe/golang
Homepage: https://snowflake.torproject.org
Depends: libc6 (>= 2.34)
Description:  WebRTC pluggable transport for Tor (client) Snowflake helps users circumvent censorship by making a WebRTC connection to volunteer proxies. These proxies relay Tor traffic to a Snowflake bridge and then to through the Tor network. . This package provides the client.
Package: snowflake-proxy (1.1.0-2)
Section: universe/golang
Homepage: https://snowflake.torproject.org
Depends: libc6 (>= 2.34)
Description:  WebRTC pluggable transport for Tor (proxy) Snowflake helps users circumvent censorship by making a WebRTC connection to volunteer proxies. These proxies relay Tor traffic to a Snowflake bridge and then to through the Tor network. . This package provides the proxy.
Package: snp-sites (2.5.1-2)
Section: universe/science
Homepage: https://github.com/sanger-pathogens/snp-sites
Depends: libc6 (>= 2.34), libsnp-sites1 (>= 2.5.1)
Description:  Binary code for the package snp-sites This program finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed).   Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip). . The software has been developed at the Wellcome Trust Sanger Institute. . A Single Nucleotide - polymorphism (SNP, pronounced snip; plural snips) is a DNA sequence variation occurring when a Single Nucleotide — A, T, C or G — in the genome (or other shared sequence) differs between members of a biological species or paired chromosomes.  For example, two sequenced DNA fragments from different individuals, AAGCCTA to AAGCTTA, contain a difference in a single nucleotide.  In this case there are two alleles.  Almost all common SNPs have only two alleles.
Package: snpeff (5.1+dfsg-2)
Section: universe/java
Homepage: https://pcingola.github.io/SnpEff/
Depends: default-jre, libsnpeff-java (= 5.1+dfsg-2)
Description:  genetic variant annotation and effect prediction toolbox - tool "We are all different!" Geneticists agree to this. Even twins, who are said to be identical are on a molecular level only "mostly" identical. And even within the exact same individual, healthy cells acquire mutations such that we are all genetic mosaics. Changes to individual cells may be induced by environmental factors, e.g. like UV light, or happen sporadically as mishaps during cellular divisions. . Because there are so many genetic differences, and most have just no particular meaning for the development of a phenotype, i.e. most have no effect, it would be nice to have heuristics implemented that direct the researcher towards single-nucleotide polymorphisms (SNPs) that are most likely to be relevant. This identifies the gene that causes or contributes to, e.g, an illness, and possibly also genes that are affected by that change. Such mechanistic understanding of a disease, particularly when multiple genes and multiple genetic variants are contributing to the then "polygenic" phenotype, is at the onset of drug development and increasingly also for selecting individualized therapies in the clinic. . SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes). The inputs are predicted variants (SNPs, insertions, deletions and MNPs). The input file is usually obtained as a result of a sequencing experiment, and it is usually in variant call format (VCF). . SnpEff analyzes the input variants. It annotates the variants and calculates the effects they produce on known genes (e.g. amino acid changes). . This package contains the command line tool.
Package: snpomatic (1.0-5)
Section: universe/science
Homepage: https://github.com/magnusmanske/snpomatic
Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2)
Description:  fast, stringent short-read mapping software High throughput sequencing technologies generate large amounts of short reads. Mapping these to a reference sequence consumes large amounts of processing time and memory, and read mapping errors can lead to noisy or incorrect alignments. . SNP-o-matic is a fast, stringent short-read mapping software. It supports a multitude of output types and formats, for uses in filtering reads, alignments, sequence-based genotyping calls, assisted reassembly of contigs etc.
Package: sntop (1.4.3-6)
Section: universe/net
Homepage: https://sourceforge.net/projects/sntop
Depends: libc6 (>= 2.34), libncurses6 (>= 6), libtinfo6 (>= 6), fping
Description:  curses-based utility that polls hosts to determine connectivity Simple network top (sntop) is a curses-based console utility, in the spirit of top, that polls network hosts at a regular interval to determine their connectivity and displays the results in a pretty format. Advanced features, such as automatic HTML generation of results, secure terminal mode, execution of external file on connectivity change, and user/system configure files, are supported.
Package: sntp (1:4.2.8p15+dfsg-1ubuntu2)
Section: universe/net
Homepage: http://support.ntp.org/
Depends: libc6 (>= 2.34), libevent-core-2.1-7 (>= 2.1.8-stable), libevent-pthreads-2.1-7 (>= 2.1.8-stable), libopts25 (>= 1:5.18.16), libssl3 (>= 3.0.0~~alpha1)
Description:  Network Time Protocol - sntp client NTP, the Network Time Protocol, is used to keep computer clocks accurate by synchronizing them over the Internet or a local network, or by following an accurate hardware receiver that interprets GPS, DCF-77, NIST or similar time signals. . sntp can be used as an SNTP client to query a NTP or SNTP server and either display the time or set the local system's time. It is not sufficient, however, for maintaining an accurate clock in the long run.
Package: so-synth-lv2 (1.5-1)
Section: universe/sound
Homepage: https://github.com/jeremysalwen/So-synth-LV2
Depends: libc6 (>= 2.2.5)
Description:  Set of synthesizers for the LV2 plugin format This package is an unofficial port of a set of synthesizers written by 50m30n3 to the LV2 plugin format.  In order to use it, you need a host for LV2 plugins such as Ardour, Qtractor, or Ingen.  This package contains three synthesizers, a feedback drone synthesizer, a piano synthesizer, and a bassline synthesizer.
Package: soapaligner (2.20-5)
Section: universe/science
Homepage: https://web.archive.org/web/20190127081222/http://soap.genomics.org.cn/soapaligner.html
Depends: libc6 (>= 2.14)
Description:  aligner of short reads of next generation sequencers This package addresses a common problem in bioinformatics that has become routine now also in clinical research: the assembly and comparison of the very long genomic DNA sequences from many short reads that the machines provide. . SOAPaligner/soap2 is a member of the Short Oligonucleotide Analysis Package (SOAP) and an updated version of SOAP software for short oligonucleotide alignment (soap v1). The new program features in super fast and accurate alignment for huge amounts of short reads generated by Illumina/Solexa Genome Analyzer. Compared to soap v1, it is one order of magnitude faster. It require only 2 minutes aligning one million single-end reads onto the human reference genome. Another remarkable improvement of SOAPaligner is that it now supports a wide range of the read length. . SOAPaligner/soap2 benefitted in time and space efficiency by a revolution in the basic data structures and algorithms used. The core algorithms and the indexing data structures (2way-BWT) are developed by the algorithms research group of the Department of Computer Science, the University of Hong Kong (T.W. Lam, Alan Tam, Simon Wong, Edward Wu and S.M. Yiu).
Package: soapdenovo2 (242+dfsg-2)
Section: universe/science
Homepage: http://soap.genomics.org.cn/soapdenovo.html
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 11), zlib1g (>= 1:1.2.3.3)
Description:  short-read assembly method to build de novo draft assembly SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. The program is specially designed to assemble Illumina GA short reads. . It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way.
Package: soapdenovo (1.05-6)
Section: universe/science
Homepage: http://soap.genomics.org.cn/soapdenovo.html
Depends: libc6 (>= 2.14)
Description:  short-read assembly method to build de novo draft assembly SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. The program is specially designed to assemble Illumina GA short reads. . It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. . This version is not maintained anymore, consider using soapdenovo2.