julilili42/papers huggingface dataset:
Magnetic Fields of Accreting X-ray pulsars
2003-12-31

The status of the knowledge about magnetic fields of neutron stars in accreting X-ray binaries through the measurement of cyclotron lines (Cyclotron Resonance Scattering Features—CRSF) is reviewed. A systematic search for cyclotron lines through observations with the Rossi X-ray Timing Explorer (RXTE) and a uniform analysis have led to a list of 10 objects showing one or more line feature(s) in phase averaged spectra (Coburn 2001, Coburn et al. 2002a). Another 3 objects are known from observations by Ginga, HEXE and OSSE, but were not observed by RXTE. For 12 further objects upper limits have been set from RXTE observations (Coburn et al. 2002b). Four objects show more than one line, with 4U 0115+63 showing up to five lines. The range of magnetic fields in these objects is ∼ (1...5)1012 Gauss. There are a number of significant correlations between parameters describing the line and the continuum spectrum, as well as among the line parameters themselves. The physics of these correlations is not well understood.
Off-shell pairing correlations from meson-exchange theory of nuclear forces
2003-12-31

We develop a model of off-mass-shell pairing correlations in nuclear systems, which is based on the meson-exchange picture of nuclear interactions. The temporal retardations in the model are generated by the Fock-exchange diagrams. The kernel of the complex gap equation for baryons is related to the in-medium spectral function of mesons, which is evaluated nonperturbatively in the random phase approximation. The model is applied to the low-density neutron matter in neutron star crusts by separating the interaction into a long-range one-pion-exchange component and a short-range component parametrized in terms of Landau Fermi liquid parameters. The resulting Eliashberg-type coupled nonlinear integral equations are solved by an iterative procedure.We find that the self-energies extend to off-shell energies of the order of several tens of MeV. At low energies the damping of the neutron pair correlations due to the coupling to the pionic modes is small, but becomes increasingly important as the energy is increased. We discuss an improved quasiclassical approximation under which the numerical solutions are obtained.
Broad Iron Lines in Active Galactic Nuclei
2003-12-31

The Fe Kα lines seen in many Active Galactic Nuclei (AGN) are thought to originate close to the central supermassive black hole. In this review we summarize the physics of the fluorescent line formation and show that Fe Kα line profile observations can be used to probe relativistic effects in the vicinity of the black hole, concentrating on recent results from XMM-Newton.
Abyssomicins, Inhibitors of the para-Aminobenzoic Acid Pathway Produced by the Marine Verrucosispora Strain AB-18-032
2004-01-01

A screening method was established to detect inhibitors of the biosynthetic pathways of aromatic amino acids and para-aminobenzoic acid, the precursor of folic acid, using an agar plate diffusion assay modified as an antagonism test. By this screening method, a family of three novel polycyclic polyketides named as abyssomicins was isolated from a marine strain of Verrucosispora. The main component abyssomicin C inhibits the pathway between chorismate and para-aminobenzoic acid and is strongly active against gram-positive bacteria, including multi-resistant clinical isolates of Staphylococcus aureus.
Toll-like receptors as key mediators in innate antifungal immunity
2004-01-01

The Toll protein of Drosophila is a transmembrane receptor involved in dorsoventral polarization during embryonic development and recognition of infection. In mammals, Toll-like receptors (TLRs) constitute a novel protein family involved in innate immunity and respond to a wide spectrum of microorganisms, including fungi, bacteria, viruses, and protozoa. Specific agonists for nine of the ten members of the human TLR family have been described to date. TLRs as well as the TLR-associated adaptor molecule MyD88 have been implicated in the recognition of the fungal pathogens Candida albicans, Aspergillus fumigatus, Cryptococcus neoformans and Pneumocystis carinii. Moreover, several pathogen associated molecular patterns (PAMPs) located in the cell wall or cell surface of fungi have been identified as potential ligands. Yeast zymosan activates TLR2/ TLR6 heterodimers, whereas Saccharomyces cerevisiae- and C. albicans-derived mannan seems to be detected by TLR4. Phospholipomannan, present in the cell surface of C. albicans has been shown to be recognized by TLR2, while TLR4 mainly interacts with glucuronoxylomannan, the major capsular polysaccharide of C. neoformans. MyD88 has been implicated in TLR signalling of linear (1 --> 3)-beta-D-glucan, and of beta-glucan from P. carinii. These data point towards the ability of the innate immune system to utilize TLRs that are specific to different types and components of pathogenic fungi. Recent evidence further suggests that TLRs cooperate with other immune receptors involved in fungal recognition and that the selective induction of adaptor proteins finally leads to distinct signalling events upon fungal challenge.
The Basophil-Specific Ectoenzyme E-NPP3 (CD203c) as a Marker for Cell Activation and Allergy Diagnosis
2004-01-01

Basophils are effector cells of allergic reactions. These cells produce and store a number of vasoactive and immunomodulatory mediators. During an allergic reaction, basophils can release their mediator substances into the extracellular space and thus contribute to the clinical picture and symptoms in allergy. The phenotypic hallmark of basophils is expression of high-affinity IgE receptors (Fc&amp;#917;RI) on their cell surface together with expression of the activation-linked molecule CD203c. This ectoenzyme is located both on the plasma membrane and in the cytoplasmic compartment of basophils. Cross-linking of the Fc&amp;#917;RI by an allergen or anti-IgE antibody results in a rapid upregulation of intracellular CD203c molecules to the cell surface and is accompanied by mediator release. CD203c is therefore a promising target molecule for a flow cytometry-based test to analyze sensitized individuals and patients with type I allergy. In the present article, we review the current knowledge of CD203c with special regard to its tissue distribution and regulation in basophil activation. In addition, we discuss the application of CD203c in allergy diagnosis.
Strontium Isotopes and Prehistoric Human Migration: The Bell Beaker Period in Central Europe
2004-01-01

Human skeletal remains from Bell Beaker graves in southern Germany, Austria, the Czech Republic, and Hungary were analyzed for information on human migration. Strontium isotope ratios were measured in bone and tooth enamel to determine if these individuals had changed ‘geological’ residence during their lifetimes. Strontium isotopes vary among different types of rock. They enter the body through diet and are deposited in the skeleton. Tooth enamel forms during early childhood and does not change. Bone changes continually through life. Difference in the strontium isotope ratio between bone and enamel in the same individual indicates change in residence. Results from the analysis of 81 Bell Beaker individuals indicated that 51 had moved during their lifetime. Information on the geology of south-central Europe, the application of strontium isotope analysis, and the relevant Bell Beaker sites is provided along with discussion of the results of the study.
Hyaluronic Acid in the Treatment and Prevention of Skin Diseases: Molecular Biological, Pharmaceutical and Clinical Aspects
2004-01-01

The glycosaminoglycan hyaluronic acid (HA), or hyaluronan, is a major component of the extracellular matrix of skin, joints, eye and many other tissues and organs. In spite of its simple structure, HA demonstrates remarkable rheological, viscoelastic and hygroscopic properties which are relevant for dermal tissue function. Biological activities in skin, however, are also due to its interaction with various binding proteins (hyaladherins). Due to an influence on signaling pathways, HA is involved in the wound-healing process and scarless fetal healing. Increased HA concentrations have been associated with inflammatory skin diseases. In clinical trials, topical application of HA improved wound healing; in particular, acute radioepithelitis, venous leg ulcers or diabetic foot lesions responded to HA treatment. Moreover, as a topical drug delivery system for diclofenac, an HA gel has recently been approved for the treatment of actinic keratoses. Finally, chemical modifications led to new HA derivates and biomaterials, which may be introduced into therapy in the future. Therefore, ongoing research offers new horizons for the therapeutic use of this glycosaminoglycan which has been regarded as an inert structural component until recently.
On the Locus of Speed-Accuracy Trade-Off in Reaction Time: Inferences From the Lateralized Readiness Potential.
2004-01-01

Lateralized readiness potentials (LRPs) were used to determine the stage(s) of reaction time (RT) responsible for speed-accuracy trade-offs (SATs). Speeded decisions based on several types of information were examined in 3 experiments, involving, respectively, a line discrimination task, lexical decisions, and an Erikson flanker task. Three levels of SAT were obtained in each experiment by adjusting response deadlines with an adaptive tracking algorithm. Speed stress affected the duration of RT stages both before and after the start of the LRP in all experiments. The latter effect cannot be explained by guessing strategies, by variations in response force, or as an indirect consequence of the pre-LRP effect. Contrary to most models, it suggests that SAT can occur at a late postdecisional stage.
Predictability of Brain-Computer Communication
2004-01-01

Abstract Since 1996 we have been teaching more than 18 severely or totally paralyzed patients to successfully control the movements of a cursor on a computer screen by means of systematic changes in the amplitudes of their slow cortical potentials (SCPs; Birbaumer, Ghanayim, Hinterberger, Iversen, Kotchoubey et al., 1999 ). Patients learned regulation of their SCP amplitudes by means of a brain-computer interface (BCI) and on-line feedback about the time course of SCP amplitude shifts, represented by cursor movements on a computer screen. When patients were able to successfully regulate their SCP amplitude, they were trained to use this ability to communicate with friends and caregivers by means of a Language Support Program ( Perelmouter, Kotchoubey, Kübler, Taub, &amp; Birbaumer, 1999 ). Having a reliable predictor of progress in training would be particularly helpful because training patients at their homes requires substantial effort and a positive outcome is desirable given limited personal and financial resources. In this study we present data from healthy participants (n = 10) and a sample of patients (n = 10), diagnosed with amyotrophic lateral sclerosis, who participated in six BCI training sessions; six patients continued training for another six sessions. All participants except one achieved stable significant cursor control. The number of sessions needed to achieve significant cursor control (initial training phase) correlated moderately with the number of sessions needed to achieve a correct response rate of 70% (advanced training phase). Individual differences in performance remained stable within the six training sessions. After six sessions both groups had achieved significant cursor control, but patients' performance was poorer than that of healthy participants. The patients, however, were trained once a week only, and for some patients longer breaks in training occurred. We conclude that learning during the initial training phase indicates the duration of training that will be necessary to achieve 70% correct responses. A higher frequency of training sessions per week seems necessary to achieve faster progress.
Comparison of Viable Cell Yield from Excised versus Aspirated Adipose Tissue
2004-01-01

The correction of soft-tissue defects by adipose tissue transplantation often produces poor and unpredictable results. The implantation of isolated and cultured preadipocytes offers a solution to this problem since these cells differentiate into adipocytes when implanted in vivo. A field of major interest is to maximize the yield of preadipocytes isolated from adipose tissue showing only low contamination with other cell types. Aspiration and excision are two concurrent clinical ways of harvesting adipose tissue for the isolation of preadipocytes. This tissue is usually discarded after surgery. In this study, the yield of preadipocytes obtained from liposuction material was compared to that of excised adipose tissue. Furthermore, we determined the loss of precursor cells if isolation of preadipocytes was delayed for 24 h. Preadipocytes were isolated from the stromal cell fraction of human subcutaneous adipose tissue samples. Harvesting of adipose tissue by suction was performed according to the Coleman procedure (manually applied negative pressure using a 10-ml syringe with a blunt tip cannula). Isolation was either carried out within 60 min after extraction or after storage for 24 h in culture medium at 4°C. Isolated preadipocytes were cultured for 24 h, trypsinized and counted in a Neubauer chamber. Our results show clearly that the yield of preadipocytes isolated from liposuction material (within 60 min after extraction and after 24 h of storage) is higher than the cell yield from excised adipose tissue. Overnight storage for 24 h leads to a significant loss of preadipocytes in excised tissue but not in liposuction material. The high yield of cells isolated from liposuction material proves that extraction by suction does not damage the stromal cell fraction in the adipose tissue. If cell isolation is not performed immediately after the operation, liposuction material is clearly the better alternative for storage.
Preparing for Action: Inferences from CNV and LRP
2004-01-01

Abstract The execution of efficient motor actions is often preceded by preparation in the central nervous system. Although this kind of preparation cannot be observed directly, it, nevertheless, shortens reaction time. In this review we focus on two types of action preparation, namely event and temporal preparation. In particular, we show how modern event-related brain potential techniques can be employed to determine both the covert processes underlying such preparatory effects as well as their locus within the processing chain between stimulus input and action output.
Cellular Reactions of Osteoblasts to Micron- and Submicron-Scale Porous Structures of Titanium Surfaces
2004-01-01

Osteoblast reactions to topographic structures of titanium play a key role in host tissue responses and the final osseointegration. Since it is difficult to fabricate micro- and nano-scale structures on titanium surfaces, little is known about the mechanism whereby the topography of titanium surfaces exerts its effects on cell behavior at the cellular level. In the present study, the titanium surface was structured in micron- and submicron-scale ranges by anodic oxidation in either 0.2 &lt;i&gt;M&lt;/i&gt; H&lt;sub&gt;3&lt;/sub&gt;PO&lt;sub&gt;4 &lt;/sub&gt;or 0.03 &lt;i&gt;M&lt;/i&gt; calcium glycerophosphate with 0.15 calcium acetate. The average dimensions of pores in the structured surface were about 0.5 and 2 μm in diameter, with roughness averaging at 0.2 and 0.4 μm, respectively. Enhanced attachment of cells (SaOS-2) was shown on micron- and submicron-scale structures. Initial cell reactions to different titanium surfaces, e.g. the development of the actin-containing structures, are determined by the different morphology of the surfaces. It is demonstrated that on either micron- or submicron-structured surfaces, many well-developed filopodia were observed to be primary adhesion structures in cell-substrate interactions, and some of them entered pores using their distinct tips or points along their length for initial attachment. Therefore, porous structures at either micro- or submicrometre scale supply positive guidance cues for anchorage-dependent cells to attach, leading to enhanced cell attachment. In contrast, the cells attached to a smooth titanium surface by focal contacts around their periphery as predominant adhesion structures, since repulsive signals from the environment led to retraction of the filopodia back to the cell bodies. These cells showed well-organized stress fibres, which exert tension across the cell body, resulting in flattened cells.
The Zebrafish as a Model Organism for Eye Development
2004-01-01

In recent years, the zebrafish has become a favourite model organism for biologists studying developmental processes in vertebrates. Its rapid embryonic development, the transparency of its embryos, the large number of offspring together with several other advantages make it ideal for discovering and understanding the genes that regulate embryonic development as well as the physiology of the adult organism. Zebrafish are very visually orientated, and their retina and lens show much the same morphology as other vertebrates including humans. For this reason, they are well suited for examining ocular development, function and disease. This review describes the advantages of the zebrafish as a model organism as well as giving an overview of eye development in this species. It has a particular focus on morphological as well as molecular aspects of the development of the lens.
Experimental analysis of gas-sensitive Braitenberg vehicles
2004-01-01

This article addresses the problem of localising a static gas source in an indoor environment by a mobile robot. In contrast to previous works, the environment is not artificially ventilated to produce a strong unidirectional airflow. Here, the dominant transport mechanisms of gas molecules are turbulence and convection flow rather than diffusion, which results in a patchy, chaotically fluctuating gas distribution. Two Braitenberg-type strategies (positive and negative tropotaxis) based on the instantaneously measured spatial concentration gradient were investigated. Both strategies were shown to be of potential use for gas source localisation. As a possible solution to the problem of gas source declaration (the task of determining with certainty that the gas source has been found), an indirect localisation strategy based on exploration and concentration peak avoidance is suggested. Here, a gas source is located by exploiting the fact that local concentration maxima occur more frequently near the gas source compared to distant regions
The Metabolic Fate of Amitriptyline, Nortriptyline and Amitriptylinoxide in Man
2004-01-01

Amitriptyline (AT), the most widely used tricyclic antidepressant, undergoes oxidative metabolism in the side chain with production of the secondary amine nortriptyline (NT), a primary amine, and the N-oxide amitriptylinoxide (AT-NO); in addition, direct conjugation leads to a quaternary ammonium-linked glucuronide. Hydroxylation of AT or NT at the ethylene bridge of the central seven-membered ring results in four isomeric alcohols and occurs with high stereo- and enantioselectivity, the (-)-(E)-10-hydroxy compounds usually being the major products. The disposition of the alcohols is also partially enantioselective, for instance with regard to glucuronidation and reversible oxidation to ketones. Introduction of a second hydroxy group results in isomeric glycols. Oxidative attack at an aromatic ring is a minor pathway leading to dihydrodiols and phenols. Numerous metabolites originate by combinations of reactions in the ring system and the side chain. AT-NO is by about one-third excreted in unchanged form or as 10-hydroxy derivative; the major part is reduced to AT and metabolized further. The review covers current knowledge on the enzymes participating in the individual pathways. Their quantitative importance is inferred from kinetic studies in volunteers and patients and from experiments in vitro. Clinical consequences of biochemical findings mainly derive from the impact of the polymorphic CYP2D6 mediating (-)-(E)-10-hydroxylation and from its potential inhibition by other psychoactive drugs.
The Cox Ring of a Del Pezzo Surface
2004-01-01

Let Xr be a smooth Del Pezzo surface obtained from P(2 by blowing up r ⩽8 points in general position. It is well known that for r ε {3,4,5,6,7,8} the Picard group Pic(X r ) contains a canonical root system R r € A 2 × A1, A4, D5, E6, E7, E8. We prove some general properties of the Cox ring of X r (r ⩾ 4) and show its similarity to the homogeneous coordinate ring of the orbit of the highest weight vector in some irreducible representation of the algebraic group G associated with the root system R r .
Arbuscular endomycorrhizas are dominant in the organic soil of a neotropical montane cloud forest
2004-01-01

The ecology and forest management of tropical montane cloud forests of the Neotropics have attracted little scientific attention so far, and understanding of the ecosystem is still fragmentary (Churchill et al. 1995). The montane forests of southern Ecuador are an outstanding biodiversity hotspot for vascular plants (Barthlott et al. 1996), including a multitude of tree species (Madsen &amp; Øllgard 1994). However, identification of species, studies of phenology, productivity, seed production and growth of seedlings have only just begun (Homeier &amp; Breckle 2002). None of the trees has been investigated with respect to their mycorrhizal status, although it is well established that mycorrhizal symbioses are not only important for survival of trees in nutrient-poor habitats (Read 1991) and play a key role for nutrient cycling and nutrient retention in the humus layers (Medina &amp; Cuevas 1993, Rilling et al. 2001), but also have an important impact on the composition of plant communities (Allen et al. 1995, Kottke 2002, van der Heijden et al. 1998).
Sentinel node identification and intraoperative lymphatic mapping. First results of a pilot study in patients with endometrial cancer.
2004-01-01

The identification of sentinel lymph nodes in endometrial cancer is a practical and safe method. In order to improve this technique as a standard procedure for staging of endometrial cancer further studies with a larger number of patients have to be done.
Immunohistochemical Detection of Activated Caspases in Apoptotic Hepatocytes in Rat Liver
2004-01-01

In our study we tested the utility of antibodies that specifically recognize the cleaved large (active) subunits of caspase-3 and caspase-9 for immunohistochemical detection of apoptotic hepatocytes in rat liver sections using archival material from cyproterone acetate (CPA)-treated and control rats. CPA blocks apoptosis of hepatocytes and discontinuation of CPA treatment results in a syncronized wave of hepatocyte apoptosis. By comparing liver sections from CPA-treated and control rats with high and low rates of apoptosis we observed a close correlation between the occurrence of cleaved caspase-positive apoptotic figures and H&amp;E-stained apoptotic bodies when evaluated in parallel sections. Caspase-stained figures were either immuno-positive apoptotic bodies or pre-apoptotic hepatocytes showing cytoplasmic and/or nuclear caspase-staining with otherwise normal cellular appearance. In extension of these observations we developed a double-immunohistochemical staining procedure which enables the detection of caspase-3-positive apoptotic hepatocytes within glutathione-S-transferase-P (GST-P)-positive preneoplastic liver foci. By use of this technique, inhibition of apoptosis by 2,3,7,8-tetrachlorodibenzo- p-dioxin as detected by counting of H&amp;E-stained apoptotic bodies was found to correlate with a strong reduction of cleaved caspase-positive hepatocytes in GST-P-positive preneoplastic foci. In summary, this study demonstrates that cleaved caspase-positive apoptotic hepatocytes could be reliably identified and quantified both in normal and neoplastically transformed liver tissue.