julilili42/papers huggingface dataset:
The Islamic Call to Prayer and Its Origin: A Story about Cultural Memory’s Permanence and Adaptability
2021-09-28

For more than two centuries, Muslims have been retelling different stories about the origin of their call to prayer. While the converging details of these narratives offer a glimpse of Muslim cultural memory and its preservation, the diverging elements reflect different mechanisms that facilitate the adaption of this cultural memory to new contexts and concerns. Based on the work of Jan Assmann, the present study explores how Muslims conserved and adapted their cultural memory to keep their common identity and expand their diversity following distinctive religious, political, or personal forms of belongings. The narratives concerned with the origin of the Islamic call to prayer and preserved in various written text collections offer a fertile ground to analyze how this part of Muslim cultural memory became the vehicle of a permanent but adaptable Muslim identity.
Genome-wide autosomal, mtDNA, and Y chromosome analysis of King Bela III of the Hungarian Arpad dynasty
2021-09-28

&lt;p&gt;The ancient Hungarians, &ldquo;Madzsars&rdquo;, established their control of the Carpathian Basin in the late ninth century and founded the Hungarian Kingdom around 1000AD. The origin of the Magyars as a tribal federation has been much debated in the past. From the time of the conquest to the early fourteenth century they were ruled by descendants of the Arpad family. In order to learn more about the genetic origin of this family, we here analyzed the genome of Bela III one of the most prominent members of the early Hungarian dynasty that ruled the Hungarian Kingdom from 1172 to 1196. The Y-Chromosome of Bela III belongs to haplogroup R1a-Z2123 that is today found in highest frequency in Central Asia, supporting a Central Asian origin for the ruling lineage of the Hungarian kingdom. The autosomal DNA profile of Bela III, however, falls within the genetic variation of present-day east European populations. This is further supported through his mtDNA genome that belongs to haplogroup H, the most common European maternal lineage, but also found in Central Asia. However, we didn&rsquo;t find an exact haplotype match for&nbsp;Bela III. The typical autosomal and maternal Central Eastern European ancestry among Bela III autosomes might be best explained by consecutive intermarriage with local European ruling families.&lt;/p&gt;
Grounding‐Zone Flow Variability of Priestley Glacier, Antarctica, in a Diurnal Tidal Regime
2021-09-29

Abstract Tidal modulation of ice streams and their adjacent ice shelves is a real‐world experiment to understand ice‐dynamic processes. We observe the dynamics of Priestley Glacier, Antarctica, using Terrestrial Radar Interferometry (TRI) and GNSS. Ocean tides are predominantly diurnal but horizontal GNSS displacements also oscillate semi‐diurnally. The oscillations are strongest in the ice shelf and tidal signatures decay near‐linearly in the TRI data over 10 km upstream of the grounding line. Tidal flexing is observed 6 km upstream of the grounding line including cm‐scale uplift. Tidal grounding line migration is small and 40% of the ice thickness. The frequency doubling of horizontal displacements relative to the ocean tides is consistent with variable ice‐shelf buttressing demonstrated with a visco‐elastic Maxwell model. Taken together, this supports previously hypothesized flexural ice softening in the grounding‐zone through tides and offers new observational constraints for the role of ice rheology in ice‐shelf buttressing.
DMCfun: An R package for fitting Diffusion Model of Conflict (DMC) to reaction time and error rate data
2021-09-29

Decision processes within choice reaction-time (CRT) tasks are often modelled using evidence accumulation models (EAMs), a variation of which is the Diffusion Decision Model (DDM, for a review, see Ratcliff et al., 2016). Ulrich et al. (2015) introduced a Diffusion Model for Conflict tasks (DMC). The DMC model combines common features from within standard diffusion models with the addition of superimposed controlled and automatic activation. The DMC model can explain data behavioural patterns within common conflict-like tasks, where stimulus features include both a relevant and irrelevant source of information (e.g., Simon task). This paper introduces the R-package DMCfun, which implements the DMC model and provides functionality to fit the model to observed data. Furthermore, the package can be used to perform and illustrate distributional analyses on data from any conflict-like CRT task.
Programmed Non-Apoptotic Cell Death in Hereditary Retinal Degeneration: Crosstalk between cGMP-Dependent Pathways and PARthanatos?
2021-09-29

Programmed cell death (PCD) is a highly regulated process that results in the orderly destruction of a cell. Many different forms of PCD may be distinguished, including apoptosis, PARthanatos, and cGMP-dependent cell death. Misregulation of PCD mechanisms may be the underlying cause of neurodegenerative diseases of the retina, including hereditary retinal degeneration (RD). RD relates to a group of diseases that affect photoreceptors and that are triggered by gene mutations that are often well known nowadays. Nevertheless, the cellular mechanisms of PCD triggered by disease-causing mutations are still poorly understood, and RD is mostly still untreatable. While investigations into the neurodegenerative mechanisms of RD have focused on apoptosis in the past two decades, recent evidence suggests a predominance of non-apoptotic processes as causative mechanisms. Research into these mechanisms carries the hope that the knowledge created can eventually be used to design targeted treatments to prevent photoreceptor loss. Hence, in this review, we summarize studies on PCD in RD, including on apoptosis, PARthanatos, and cGMP-dependent cell death. Then, we focus on a possible interplay between these mechanisms, covering cGMP-signaling targets, overactivation of poly(ADP-ribose)polymerase (PARP), energy depletion, Ca2+-permeable channels, and Ca2+-dependent proteases. Finally, an outlook is given into how specific features of cGMP-signaling and PARthanatos may be targeted by therapeutic interventions.
Individualized Determination of the Mechanical Fracture Environment After Tibial Exchange Nailing—A Simulation-Based Feasibility Study
2021-09-29

Non-union rate after tibial fractures remains high. Apart from largely uncontrollable biologic, injury, and patient-specific factors, the mechanical fracture environment is a key determinant of healing. Our aim was to establish a patient-specific simulation workflow to determine the mechanical fracture environment and allow for an estimation of its healing potential. In a referred patient with failed nail-osteosynthesis after tibial-shaft fracture exchange nailing was performed. Post-operative CT-scans were used to construct a three-dimensional model of the treatment situation in an image processing and computer-aided design system. Resulting forces, computed in a simulation-driven workflow based on patient monitoring and motion capturing were used to simulate the mechanical fracture environment before and after exchange nailing. Implant stresses for the initial and revision situation, as well as interfragmentary movement, resulting hydrostatic, and octahedral shear strain were calculated and compared to the clinical course. The simulation model was able to adequately predict hardware stresses in the initial situation where mechanical implant failure occurred. Furthermore, hydrostatic and octahedral shear strain of the revision situation were calculated to be within published healing boundaries—accordingly the fracture healed uneventfully. Our workflow is able to determine the mechanical environment of a fracture fixation, calculate implant stresses, interfragmentary movement, and the resulting strain. Critical mechanical boundary conditions for fracture healing can be determined in relation to individual loading parameters. Based on this individualized treatment recommendations during the early post-operative phase in lower leg fractures are possible in order to prevent implant failure and non-union development.
Revisiting the phosphorite deposit of Fontanarejo (central Spain): new window into the early Cambrian evolution of sponges and the microbial origin of phosphorites
2021-09-29

Abstract Fossils within early Cambrian phosphorites worldwide are often well preserved due to early diagenetic permineralization. Here, we examine the fossil record contained within phosphorites of the Lower Cambrian Pusa Formation (late Fortunian to Cambrian Stage 2) in Fontanarejo, central Spain. The sedimentology and age of these phosphorites have been controversial and are here reviewed and discussed, providing also an updated geological map. The Pusa Formation is composed of fine clastic sediments that are partly turbiditic, with channels of quartz-rich conglomerates and abundant phosphorites in the upper part of the succession. The microfacies and mineralogy of these channel deposits are studied here for the first time in detail, showing that they are mainly composed of subspherical apatite clasts, with minor mudstone intraclasts, quartzite and mica grains. Numerous sponge spicules, as well as entirely preserved hexactinellid sponges and demosponges, were collected within these phosphorites and likely represent stem groups. In addition to sponges, other fossils, such as small shelly fossils (SSF) of the mollusc Anabarella sp., were found. The phosphorites exhibit multiple evidence of intense microbial activity, including diverse fabrics (phosphatic oncoidal-like microbialites, thrombolites, stromatolites and cements) and abundant fossils of filamentous microbes that strongly resemble extant sulphur-oxidizing bacteria. Our findings strongly suggest that microbial processes mediated the rapid formation of most of the Fontanarejo apatite, probably accounting for the exceptional preservation of fragile fossils such as sponge skeletons. The apparent presence of taxonomically diverse hexactinellid and demosponge communities at the lowermost Cambrian further corroborates a Precambrian origin of the phylum Porifera.
Relative educational poverty: conceptual and empirical issues
2021-09-29

Abstract This paper’s goal is to discuss implications for the empirical study of low educational status arising from the use of the concept of educational poverty in research. It has two related conceptual foci: (1) the relationship of educational poverty with material poverty and to what extent useful parallels exist, and (2) the distinction of absolute and relative (educational) poverty and whether the notion of absolute (educational) poverty is a sensible one. For the concept of educational poverty to be analytically fruitful, clear conceptualisation and operationalisation of the relevant issues are required. The paper contributes to the aim of providing these by building on existing work on educational poverty and by drawing on relevant work on material poverty as well as discussing some conceptual challenges and some of the challenges arising from the operationalisation of the concepts. Some of these challenges are illustrated using examples based on data from the German National Educational Panel Study (NEPS). In a further step, factors which may lead to a greater risk of being in relative educational poverty are analysed, employing the method multi-value Qualitative Comparative Analysis. The empirical findings highlight the relative nature of educational qualifications: the usefulness of a basic school leaving qualification has changed over time, and it has not been the same for different groups. Thus, a conceptualisation of low educational status as educational poverty has been shown to be useful, and it has been demonstrated that the relative nature of educational poverty ought to be taken into account by researchers.
The eROSITA Final Equatorial-Depth Survey (eFEDS)
2021-09-29

Context. The eROSITA Final Equatorial Depth Survey (eFEDS), completed in survey mode during the calibration and performance verification phase of the eROSITA instrument on Spectrum Roentgen Gamma, delivers data at and beyond the final depth of the 4-yr eROSITA all-sky survey (eRASS:8), f 0.5–2 keV = 1.1 × 10 −14 erg s −1 cm −2 , over 140 deg 2 . It provides the first view of normal galaxy X-ray emission from X-ray binaries (XRBs) and the hot interstellar medium at the full depth of eRASS:8. Aims. We used the Heraklion Extragalactic Catalogue (HECATE) of galaxies to correlate with eFEDS X-ray sources and identify X-ray detected normal galaxies. This flux-limited X-ray survey is relatively free from selection effects and enables the study of integrated normal galaxy X-ray emission and its relation to galaxy parameters such as the stellar mass, star formation rate (SFR), and metallicity. Methods. We cross-correlated 32 646 eFEDS X-ray sources to 1181 HECATE normal galaxies and obtained 94 matches. We classified galaxies as star-forming, early-type, composite, and active galactic nuclei (AGN) using Sloan Digital Sky Survey (SDSS) and Six-degree Field (6dF) optical spectroscopy. Results. The eFEDS field harbours 37 normal galaxies: 36 late-type (star-forming) galaxies and one early-type galaxy. There are 1.9 times as many normal galaxies as predicted by scaling relations via simulations, with an overabundance of late-type galaxies and a dearth of early-type galaxies. When compared with empirical relations, eFEDS dwarf galaxies with a high specific SFR have elevated L X /SFR at a fixed specific SFR and metallicity, indicating an increase in XRB emission due to low metallicity. We expect that eRASS:8 will detect 12 500 normal galaxies, the majority of which will be star-forming, with the caveat that there are unclassified sources in eFEDS and galaxy catalogue incompleteness issues that could increase the actual number of detected galaxies over these current estimates. Conclusions. eFEDS observations detected a rare population of galaxies – the metal-poor dwarf starbursts – that do not follow known scaling relations. eRASS is expected to discover significant numbers of these high-redshift analogues, which are important for studying the heating of the intergalactic medium at high redshift. Further investigation of the hot gas emission from normal galaxies and stochastic effects in the dwarf galaxy population are required to constrain their X-ray output.
Metabolic Tumor Microenvironment Characterization of Contrast Enhancing Brain Tumors Using Physiologic MRI
2021-09-29

The tumor microenvironment is a critical regulator of cancer development and progression as well as treatment response and resistance in brain neoplasms. The available techniques for investigation, however, are not well suited for noninvasive in vivo characterization in humans. A total of 120 patients (59 females; 61 males) with newly diagnosed contrast-enhancing brain tumors (64 glioblastoma, 20 brain metastases, 15 primary central nervous system (CNS) lymphomas (PCNSLs), and 21 meningiomas) were examined with a previously established physiological MRI protocol including quantitative blood-oxygen-level-dependent imaging and vascular architecture mapping. Six MRI biomarker maps for oxygen metabolism and neovascularization were fused for classification of five different tumor microenvironments: glycolysis, oxidative phosphorylation (OxPhos), hypoxia with/without neovascularization, and necrosis. Glioblastoma showed the highest metabolic heterogeneity followed by brain metastasis with a glycolysis-to-OxPhos ratio of approximately 2:1 in both tumor entities. In addition, glioblastoma revealed a significant higher percentage of hypoxia (24%) compared to all three other brain tumor entities: brain metastasis (7%; p &lt; 0.001), PCNSL (8%; p = 0.001), and meningioma (8%; p = 0.003). A more aggressive biological brain tumor behavior was associated with a higher percentage of hypoxia and necrosis and a lower percentage of remaining vital tumor tissue and aerobic glycolysis. The proportion of oxidative phosphorylation, however, was rather similar (17–26%) for all four brain tumor entities. Tumor microenvironment (TME) mapping provides insights into neurobiological differences of contrast-enhancing brain tumors and deserves further clinical cancer research attention. Although there is a long roadmap ahead, TME mapping may become useful in order to develop new diagnostic and therapeutic approaches.
Good Scientific Practice in MEEG Research: Progress and Perspectives
2021-09-29

Good Scientific Practice (GSP) refers to both explicit and implicit rules or guidelines that help scientists to produce work that is of the highest quality at any given time, and to efficiently share that work with the community for further scrutiny or utilization. For experimental research using magneto- and electroencephalography (MEEG), GSP includes specific standards and guidelines for technical competence, which are periodically updated whenever new findings come to light. However, GSP also needs to be periodically revisited in a broader light. At the LiveMEEG 2020 conference, a reflection on GSP was fostered that included explicitly documented guidelines and technical advances, but also emphasised intangible GSP: a general awareness of personal, organisational, and societal realities and how they can influence MEEG research. This article provides an extensive report on most of the LiveMEEG contributions and new literature, with the additional aim to synthesize ongoing cultural changes in GSP. It first covers GSP with respect to cognitive biases and logical fallacies, pre-registration as a tool to avoid those and other early pitfalls, and a number of resources to enable collaborative and reproducible research as a general approach to minimize misconceptions. Second, GSP with respect to data acquisition, analysis, reporting, and sharing is discussed, including new tools and frameworks to support collaborative work. Finally, GSP is considered in light of ethical implications of MEEG research and the resulting responsibility that scientists have to engage with societal challenges. Considering among other things the benefits of peer review and open access at all stages, the need to coordinate larger international projects, the complexity of MEEG subject matter, and today's prioritization of fairness, privacy, and the environment, we find that current GSP tends to favour collective and cooperative work, for both scientific and for societal reasons.
Searching for TeV Gamma-Ray Emission from SGR 1935+2154 during Its 2020 X-Ray and Radio Bursting Phase
2021-09-29

Abstract Magnetar hyperflares are the most plausible explanation for fast radio bursts (FRBs)—enigmatic powerful radio pulses with durations of several milliseconds and high brightness temperatures. The first observational evidence for this scenario was obtained in 2020 April when an FRB was detected from the direction of the Galactic magnetar and soft gamma-ray repeater SGR 1935+2154. The FRB was preceded by two gamma-ray outburst alerts by the BAT instrument aboard the Swift satellite, which triggered follow-up observations by the High Energy Stereoscopic System (H.E.S.S.). H.E.S.S. observed SGR 1935+2154 for 2 hr on 2020 April 28. The observations are coincident with X-ray bursts from the magnetar detected by INTEGRAL and Fermi-GBM, thus providing the first very high energy gamma-ray observations of a magnetar in a flaring state. High-quality data acquired during these follow-up observations allow us to perform a search for short-time transients. No significant signal at energies E &gt; 0.6 TeV is found, and upper limits on the persistent and transient emission are derived. We here present the analysis of these observations and discuss the obtained results and prospects of the H.E.S.S. follow-up program for soft gamma-ray repeaters.
Lying in a 3T MRI scanner induces neglect-like spatial attention bias
2021-09-29

The static magnetic field of MRI scanners can induce a magneto-hydrodynamic stimulation of the vestibular organ (MVS). In common fMRI settings, this MVS effect leads to a vestibular ocular reflex (VOR). We asked whether – beyond inducing a VOR – putting a healthy subject in a 3T MRI scanner would also alter goal-directed spatial behavior, as is known from other types of vestibular stimulation. We investigated 17 healthy volunteers, all of which exhibited a rightward VOR inside the MRI-scanner as compared to outside-MRI conditions. More importantly, when probing the distribution of overt spatial attention inside the MRI using a visual search task, subjects scanned a region of space that was significantly shifted toward the right. An additional estimate of subjective straight-ahead orientation likewise exhibited a rightward shift. Hence, putting subjects in a 3T MRI-scanner elicits MVS-induced horizontal biases of spatial orienting and exploration, which closely mimic that of stroke patients with spatial neglect.
Between the devil and the deep blue sea: herbivory induces foraging for and uptake of cadmium in a metal hyperaccumulating plant
2021-09-29

Plants have been shown to change their foraging behaviour in response to resource heterogeneity. However, an unexplored hypothesis is that foraging could be induced by environmental stressors, such as herbivory, which might increase the demand for particular resources, such as those required for herbivore defence. This study examined the way simulated herbivory affects both root foraging for and uptake of cadmium (Cd), in the metal-hyperaccumulating plant Arabidopsis halleri , which uses this heavy metal as herbivore defence. Simulated herbivory elicited enhanced relative allocation of roots to Cd-rich patches as well as enhanced Cd uptake, and these responses were exhibited particularly by plants from non-metalliferous origin, which have lower metal tolerance. By contrast, plants from a metalliferous origin, which are more tolerant to Cd, did not show any preference in root allocation, yet enhanced Cd sharing between ramets when exposed to herbivory. These results suggest that foraging for heavy metals, as well as their uptake and clonal-sharing, could be stimulated in A. halleri by herbivory impact. Our study provides first support for the idea that herbivory can induce not only defence responses in plants but also affect their foraging, resource uptake and clonal sharing responses.
Consciousness with Body and Soul: an Attempt at Cohen’s Never-Written Psychology
2021-09-29

There are contemporary tendencies to regard the human consciousness as an algorithm, or to reduce the human subjective to organic-natural processes or to see it as a social construction depending on cultural conditions. Such approaches pose a challenge to ethical humanism, as it seems, as if it requires new justification and groundings. How can we grasp and defend the concept of embodied subjectivity of man and its freedom to act? How can we think of its unity including thought, will and feeling, preventing it from getting lost in specialized potentials, and maintaining the person as an alert, responsible and self-founded unit? Furthermore, how is it possible to preserve the meaning of the name of the soul, since the notion of this traditional limit concept of the human subjective has fallen into disuse and likely vanished from the horizon? The essay asks for answer with the help of Hermann Cohen, the great Jewish philosopher of Neo-Kantianism, following the traces of his repeatedly stated, however never written systematic psychology. This first part of investigation confines itself to understand Cohen's early interpretation of Plato as the "primordial cell" of his psychology in order to show how the first three parts of his system of philosophy (Logic, Ethics, Aesthetics) answer to some of the questions and problems the early work had raised, with special attention to Cohens philosophy of religion. Self-movement of soul and its deep connection with the human body could be viewed and grasped from the unity of human culture as well as of the allness of man.