julilili42/papers huggingface dataset:
Biofunctionalization of surfaces using polyelectrolyte multilayers
2017-01-01

Abstract Biomaterials play a central role in modern strategies in regenerative medicine and tissue engineering to restore the structure and function of damaged or dysfunctional tissue and to direct cellular behavior. Both biologically derived and synthetic materials have been extensively explored in this context. However, most materials when implanted into living tissue initiate a host response. Modern implant design therefore aims to improve implant integration while avoiding chronic inflammation and foreign body reactions, and thus loss of the intended implant function. Directing these processes requires an in-depth understanding of the immunological processes that take place at the interface between biomaterials and the host tissue. The physicochemical properties of biomaterial surfaces (charge, charge density, hydrophilicity, functional molecular domains, etc.) are decisive, as are their stiffness, roughness and topography. This review outlines specific strategies, using polyelectrolyte multilayers to modulate the interactions between biomaterial surfaces and biological systems. The described coatings have the potential to control the adhesion of proteins, bacteria and mammalian cells. They can be used to decrease the risk of bacterial infections occurring after implantation and to achieve better contact between biological tissue and implants. In summary, these results are important for further development and modification of surfaces from different medical implants.
Synthesis and derivatisation of ceric tris(tert-butoxy)siloxides
2017-01-01

Heteroleptic ceric Ce[OSi(O<italic>t</italic>Bu)<sub>3</sub>]<sub>3</sub>Cl(thf) is straightforwardly obtained from cerous Ce[OSi(O<italic>t</italic>Bu)<sub>3</sub>]<sub>3</sub>(thf)<sub>2</sub>and trityl chloride and gives access to the terminal siloxy/methoxy derivative Ce[OSi(O<italic>t</italic>Bu)<sub>3</sub>]<sub>3</sub>(OCH<sub>3</sub>)(thf)<sub>2</sub>.
Decidualization is Impaired in Endometrial Stromal Cells from Uterine Rudiments in Mayer-Rokitansky-Küster-Hauser Syndrome
2017-01-01

Background/Aims: Uterine rudiments from patients with Mayer-Rokitansky-Küster-Hauser syndrome (MRKHS) contain all tissues typically found in the uterus. Endometrium from the rudiments predominantly exhibits basalis-like features, and endometrial proliferative capacity in patients’ epithelium and stroma is significantly lower. Methods: This single-center, prospective study conducted at a major German university hospital compared in-vitro decidualization in cultured ESCs from MRKHS patients and hysterectomy controls. Primary ESC cultures were established from both sources. Hormone-induced prolactin and IGFBP-1 secretion served as a measure of their ability to undergo decidualization in response to hormonal stimulation. Expression levels of 8 key marker genes of decidualization were also determined. Results: At day 9, mean secretion of prolactin and IGFBP-1 was significantly reduced by 89.0% and 99.5%, respectively, in MRKHS ESCs vs. hysterectomy controls, both indicating impaired decidualization of MRKHS ESCs. Key decidual markers confirmed impaired decidualization in MRKHS patients. Conclusion: Our results indicate that the ESCs from MRKHS patients lack hormone responsiveness as a potential sign of dysfunctional hormone receptor function, which may also play a role in the onset of MRKHS. Further studies are needed to corroborate our findings, directly address receptor function, and elucidate the role of other potential determinants of uterine development and adult function.
Question Generation for Language Learning: From ensuring texts are read to supporting learning
2017-01-01

In Foreign Language Teaching and Learning (FLTL), questions are systematically used to assess the learner’s understanding of a text. Computational linguistic approaches have been developed to generate such questions automatically given a text (e.g., Heilman, 2011). In this paper, we want to broaden the perspective on the different functions questions can play in FLTL and discuss how automatic question generation can support the different uses. Complementing the focus on meaning and comprehension, we want to highlight the fact that questions can also be used to make learners notice form aspects of the linguistic system and their interpretation. Automatically generating questions that target linguistic forms and grammatical categories in a text in essence supports incidental focus-on-form (Loewen, 2005) in a meaning-focused reading task. We discuss two types of questions serving this purpose, how they can be generated automatically; and we report on a crowd-sourcing evaluation comparing automatically generated to manually written questions targeting particle verbs, a challenging linguistic form for learners of English.
Impact of Combined Subthalamic Nucleus and Substantia Nigra Stimulation on Neuropsychiatric Symptoms in Parkinson’s Disease Patients
2017-01-01

The goal of the study was to compare the tolerability and the effects of conventional subthalamic nucleus (STN) and combined subthalamic nucleus and substantia nigra (STN+SNr) high-frequency stimulation in regard to neuropsychiatric symptoms in Parkinson’s disease patients. In this single center, randomized, double-blind, cross-over clinical trial, twelve patients with advanced Parkinson’s disease (1 female; age:<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" id="M1"><mml:mn fontstyle="italic">61.3</mml:mn><mml:mo>±</mml:mo><mml:mn fontstyle="italic">7.3</mml:mn></mml:math>years; disease duration:<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" id="M2"><mml:mn fontstyle="italic">12.3</mml:mn><mml:mo>±</mml:mo><mml:mn fontstyle="italic">5.4</mml:mn></mml:math>years; Hoehn and Yahr stage:<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" id="M3"><mml:mn fontstyle="italic">2.2</mml:mn><mml:mo>±</mml:mo><mml:mn fontstyle="italic">0.39</mml:mn></mml:math>) were included. Apathy, fatigue, depression, and impulse control disorder were assessed using a comprehensive set of standardized rating scales and questionnaires such as the Lille Apathy Rating Scale (LARS), Modified Fatigue Impact Scale (MFIS), Becks Depression Inventory (BDI-I), Questionnaire for Impulsive-Compulsive Disorders in Parkinson’s Disease Rating Scale (QUIP-RS), and Parkinson’s Disease Questionnaire (PDQ-39). Three patients that were initially assigned to the STN+SNr stimulation mode withdrew from the study within the first week due to discomfort. Statistical comparison of data retrieved from patients who completed the study revealed no significant differences between both stimulation conditions in terms of mean scores of scales measuring apathy, fatigue, depression, impulse control disorder, and quality of life. Individual cases showed an improvement of apathy under combined STN+SNr stimulation. In general, combined STN+SNr stimulation seems to be safe in terms of neuropsychiatric side effects, although careful patient selection and monitoring in the short-term period after changing stimulation settings are recommended.
Context Sensitivity of EEG-based Workload Classification under different Affective Valence
2017-01-01

State of the art brain-computer interfaces (BCIs) largely focus on detecting single, specific, often experimentally induced or manipulated aspects of the user state. In a less controlled, more naturalistic environment, a larger variety of mental processes may be active and possibly interacting. When moving BCI applications from the lab to real-life applications, these additional unaccounted mental processes could interfere with user state decoding, thus decreasing system efficacy and decreasing real-world applicability. Here, we assess the impact of affective valence on classification of working memory load, by re-analyzing a dataset that used an affective N-back task with picture stimuli. Our analyses showed that classification of working memory load under affective valence can lead to good classification accuracies (> 70 percent), which can be further improved via data integration over time. However, positive as well as negative affective valence resulted in decreased classification accuracies, when compared to the neutral affective context. Furthermore, classifiers failed to generalize across affective contexts, highlighting the need for user state models that can account for different contexts or new, context-independent, EEG features.
Triggering of Eryptosis, the Suicidal Erythrocyte Death, by Perifosine
2017-01-01

Background/Aims: The alkylphospholipid perifosine is used for the treatment of malignancy. The substance is effective by triggering suicidal tumor cell death or apoptosis. Side effects of perifosine include anemia. At least in theory, perifosine-induced anemia could result from stimulation of suicidal erythrocyte death or eryptosis. Hallmarks of eryptosis are cell shrinkage and cell membrane scrambling with phosphatidylserine translocation to the erythrocyte surface. Cellular mechanisms participating in the orchestration of eryptosis include increase of cytosolic Ca2+ activity ([Ca2+]i), oxidative stress, increase of ceramide abundance, as well as activation of staurosporine sensitive protein kinase C and/or of SB203580 sensitive p38 kinase. The present study explored, whether perifosine induces eryptosis and, if so, whether its effect involves and/or requires Ca2+ entry, oxidative stress, ceramide and kinase activation. Methods: Flow cytometry was employed to quantify phosphatidylserine exposure at the cell surface from annexin-V-binding, cell volume from forward scatter, [Ca2+]i from Fluo3-fluorescence, reactive oxygen species (ROS) abundance from DCFDA dependent fluorescence, and ceramide abundance utilizing specific antibodies. Hemolysis was estimated from hemoglobin concentration in the supernatant. Results: A 24 hours exposure of human erythrocytes to perifosine (2.5 μg/ml) significantly increased the percentage of annexin-V-binding cells, significantly decreased average forward scatter, significantly increased the percentage of shrunken erythrocytes, and significantly decreased the percentage of swollen erythrocytes. Perifosine significantly increased the percentage of hemolytic erythrocytes. Perifosine significantly increased Fluo3-fluorescence, but decreased DCFDA fluorescence and ceramide abundance. The effect of perifosine on annexin-V-binding was significantly blunted by removal of extracellular Ca2+ and by addition of staurosporine (1 μM), but not by addition of SB203580 (2 μM). Conclusions: Perifosine triggers eryptosis, an effect at least in part due to Ca2+ entry and activation of staurosporine sensitive kinases.
Understanding Idiomatic Variation
2017-01-01

This study investigates the processing of idiomatic variants through an eye-tracking experiment. Four types of idiom variants were included, in addition to the canonical form and the literal meaning. Results suggest that modifications to idioms, modulo obvious effects of length differences, are not more difficult to process than the canonical forms themselves. This fits with recent corpus findings.
Trifluoperazine-Induced Suicidal Erythrocyte Death and S-Nitrosylation Inhibition, Reversed by the Nitric Oxide Donor Sodium Nitroprusside
2017-01-01

Background and Purpose: The high potency antipsychotic drug trifluoperazine (10-[3-(4-methyl-1-piperazinyl)-propyl]-2-(trifluoromethyl)-(10)H-phenothiazine dihydrochloride; TFP) may either counteract or promote suicidal cell death or apoptosis. Similar to apoptosis, erythrocytes may enter eryptosis, characterized by phosphatidylserine exposure at the cell surface and cell shrinkage. Eryptosis can be stimulated by an increase in cytoplasmic Ca2+ concentration ([Ca2+]i) and inhibited by nitric oxide (NO). We explored whether TFP treatment of erythrocytes induces phosphatidylserine exposure, cell shrinkage, and calcium influx, whether it impairs S-nitrosylation and whether these effects are inhibited by NO. Methods: Phosphatidylserine exposure at the cell surface was estimated from annexin-V-binding, cell volume from forward scatter, [Ca2+]i from Fluo3-fluorescence, and protein nitrosylation from fluorescence switch of the Bodipy-TMR/Sypro Ruby signal. Results: Exposure of human erythrocytes to TFP significantly enhanced the percentage of annexin-V-binding cells, raised [Ca2+]i, and decreased S-nitrosylation. The effect of TFP on annexin-V-binding was not affected by removal of extracellular Ca2+ alone, but was significantly inhibited by pre-treatment with sodium nitroprusside (SNP), an effect significantly augmented by additional removal of extracellular Ca2+. A 3 hours treatment with 0.1 μM Ca2+ ionophore ionomycin triggered annexin-V-binding and cell shrinkage, effects fully reversed by removal of extracellular Ca2+. Conclusions: TFP induces eryptosis and decreases protein S-nitrosylation, effects blunted by nitroprusside. The effect of nitroprusside is attenuated in the presence of extracellular Ca2+.
Simvastatin, a Novel Stimulator of Eryptosis, the Suicidal Erythrocyte Death
2017-01-01

Background/Aims: The 3-hydroxy-3-methyl-glutaryl-Coenzyme A (HMG-CoA) reductase inhibitor simvastatin has been shown to trigger apoptosis of several cell types. The substance has thus been proposed as an additional treatment of malignancy. Similar to apoptosis of nucleated cells, erythrocytes may enter eryptosis, the suicidal erythrocyte death. Hallmarks of eryptosis include cell shrinkage and cell membrane scrambling with phosphatidylserine translocation to the extracellular face of the erythrocyte cell membrane. Signaling contributing to stimulation of eryptosis include increase of cytosolic Ca2+ activity ([Ca2+]i), induction of oxidative stress, increase of ceramide abundance, and activation of SB203580-sensitive p38 kinase. The present study explored, whether simvastatin induces eryptosis and aimed to shed light on cellular mechanisms involved. Methods: Flow cytometry was employed to quantify phosphatidylserine exposure at the cell surface from annexin-V-binding, cell volume from forward scatter, [Ca2+]i from Fluo3-fluorescence, reactive oxygen species (ROS) abundance from DCFDA dependent fluorescence, and ceramide abundance utilizing specific antibodies. Hemolysis was estimated from hemoglobin concentration in the supernatant. Results: A 48 h exposure of human erythrocytes to simvastatin (1 μg/ml) significantly decreased the forward scatter, significantly augmented the percentage of annexin-V-binding cells, significantly increased Fluo3-fluorescence, and significantly enhanced DCFDA fluorescence. Simvastatin tended to increase ceramide abundance, an effect, however, escaping statistical significance. The effect of simvastatin on annexin-V-binding was significantly blunted by removal of extracellular Ca2+ and by addition of SB203580 (2 μM). Conclusions: Simvastatin stimulates eryptosis, an effect at least in part due to Ca2+ entry, oxidative stress, and p38 kinase.
The Birth of the Modern Era of Parkinson's Disease Genetics.
2017-01-01

Genetic understanding in Parkinson’s disease (PD) has followed a path of hard won evolution occasionally punctuated by revolution. While it was suggested early on by both Leroux and Gowers that heredity had a role to play in PD, this was a view that wasn’t widely enough held to even be unpopular. The dogma was that the disease was one of environmental provenance and while the evidence for this is still rather scarce, this view pervades in the minds of patients, clinicians, and scientists. Conversely the evidence linking genetics to PD is both overwhelming and growing. Here we describe the growth of genetics in PD from backwater to driving force, and the structure and shape of its future.
Temperature dependence of metal-enhanced fluorescence of photosystem I from Thermosynechococcus elongatus
2017-01-01

We report the temperature dependence of metal-enhanced fluorescence (MEF) of individual photosystem I (PSI) complexes from Thermosynechococcus elongatus (T. elongatus) coupled to gold nanoparticles (AuNPs). A strong temperature dependence of shape and intensity of the emission spectra is observed when PSI is coupled to AuNPs. For each temperature, the enhancement factor (EF) is calculated by comparing the intensity of individual AuNP-coupled PSI to the mean intensity of 'uncoupled' PSI. At cryogenic temperature (1.6 K) the average EF was 4.3-fold. Upon increasing the temperature to 250 K the EF increases to 84-fold. Single complexes show even higher EFs up to 441.0-fold. At increasing temperatures the different spectral pools of PSI from T. elongatus become distinguishable. These pools are affected differently by the plasmonic interactions and show different enhancements. The remarkable increase of the EFs is explained by a rate model including the temperature dependence of the fluorescence yield of PSI and the spectral overlap between absorption and emission spectra of AuNPs and PSI, respectively.
Triggering of Eryptosis, the Suicidal Erythrocyte Death by Mammalian Target of Rapamycin (mTOR) inhibitor Temsirolimus
2017-01-01

Background/Aims: The mammalian target of rapamycin (mTOR) inhibitor temsirolimus is utilized for the treatment of malignancy. Temsirolimus is at least in part effective by triggering suicidal tumor cell death. The most common side effect of temsirolimus treatment is anemia. At least in theory, the anemia following temsirolimus treatment could result from stimulation of eryptosis, the suicidal erythrocyte death. Hallmarks of eryptosis include cell shrinkage and cell membrane scrambling with phosphatidylserine translocation to the erythrocyte surface. Signaling involved in the orchestration of eryptosis include increase of cytosolic Ca2+ activity ([Ca2+]i), oxidative stress, ceramide, as well as activation of staurosporine and chelerythrine sensitive protein kinase C, SB203580 sensitive p38 kinase, D4476 sensitive casein kinase 1, and zVAD sensitive caspases. The purpose of the present study was to test whether temsirolimus influences eryptosis and, if so, to shed light on the signaling involved. Methods: Flow cytometry was employed to estimate cell volume from forward scatter, phosphatidylserine exposure at the cell surface from annexin-V-binding, [Ca2+]i from Fluo3-fluorescence, reactive oxygen species (ROS) abundance from DCFDA dependent fluorescence, and ceramide abundance utilizing specific antibodies. Hemolysis was determined from hemoglobin concentration in the supernatant. Results: A 48 hours exposure of human erythrocytes to temsirolimus (5 – 20 μg/ml) significantly decreased forward scatter and significantly increased the percentage of annexin-V-binding cells. Temsirolimus significantly increased Fluo3-fluorescence, DCFDA fluorescence and ceramide abundance at the erythrocyte surface. The effect of temsirolimus on annexin-V-binding was significantly blunted but not abolished by removal of extracellular Ca2+ and by addition of staurosporine (1 μM) or chelerythrine (10 μM) but not significantly modified by addition of SB203580 (2 μM), D4476 (10 μM), or zVAD (10 μM). Chelerythrine (10 μM) further significantly blunted the effect of temsirolimus on DCFDA fluorescence but not ceramide formation. Removal of extracellular Ca2+ had no effect on temsirolimus induced ROS formation or ceramide abundance. Conclusions: Temsirolimus triggers eryptosis with cell shrinkage and phospholipid scrambling of the erythrocyte cell membrane, an effect at least in part due to Ca2+ entry, oxidative stress, ceramide and activation of staurosporine/Chelerythrine sensitive kinase(s).
Ecomorphological and taphonomic gradient of clypeasteroid-dominated echinoid assemblages along a mixed siliciclastic-carbonate shelf from the early Miocene of northern Sardinia, Italy
2017-01-01

Clypeasteroid echinoids are widespread and abundant within Miocene sedimentary sequences of the Mediterranean area within both siliciclastic and carbonate deposits. Herein, three clypeasteroid-dominated echinoid assemblages from the mixed siliciclastic-carbonate succession of the Mores Formation (lower Miocene) cropping out within the Porto Torres Basin (northern Sardinia) are described. These assemblages were compared to previously described clypeasteroid-bearing deposits from the Miocene of northern Sardinia with the purpose of investigating their palaeoecology and taphonomy along a shelf gradient. These goals are accomplished by various methods including (i) logging sedimentary facies, (ii) analysing the functional morphology of sea urchin skeletons, (iii) comparing the relative abundance of taxa and taphonomic features, and (iv) studying associated fauna, flora, and trace fossils. The clypeasteroid-bearing deposits differ greatly with respect to echinoid diversity, accompanying fauna and flora, sedimentological signatures, and taphonomic features. They also show variations in depositional environments and the mechanism of formation of the deposits. Three different shelf settings are distinguished: littoral, inner sublittoral, and outer sublittoral environments. Furthermore, an ecomorphological gradient along the shelf is recognized with respect to echinoid taxa and their morphologies. This gradient ranges from shallow water to a moderately deep shelf and is interpreted with respect to both abiotic and biotic factors as well as the taphonomy of the echinoid tests.
Laparoscopic versus Open Partial Nephrectomy: Comparison of Overall and Subgroup Outcomes
2017-01-01

Use of LPN is associated with favorable tumor characteristics. Although no advantage was shown for LPN for tumors with higher complexity (PADUA>8), this large series confirmed the superiority of LPN for imperative indication or multifocal tumors.
Role of GntR Family Regulatory GeneSCO1678in Gluconate Metabolism inStreptomyces coelicolorM145
2017-01-01

Here we report functional characterization of the Streptomyces coelicolor M145 gene SCO1678, which encodes a GntR-like regulator of the FadR subfamily. Bioinformatic analysis suggested that SCO1678 is part of putative operon (gnt) involved in gluconate metabolism. Combining the results of SCO1678 knockout, transcriptional analysis of gnt operon, and Sco1678 protein-DNA electromobility shift assays, we established that Sco1678 protein controls the gluconate operon. It does so via repression of its transcription from a single promoter located between genes SCO1678 and SCO1679 . The knockout also influenced, in a medium-dependent manner, the production of secondary metabolites by S. coelicolor . In comparison to the wild type, on gluconate-containing minimal medium, the SCO1678 mutant produced much less actinorhodin and accumulated a yellow-colored pigment, likely to be the cryptic polyketide coelimycin. Possible links between gluconate metabolism and antibiotic production are discussed.
Neutron Tomography and X-ray Tomography as Tools for the Morphological Investigation of Non-mammalian Synapsids
2017-01-01

As having evolved on the stem line of mammals, the taxonomy and phylogeny of therapsids (Synapsida) are of special interest with respect to early mammalian evolution. Due to the fact that in most cases soft tissue of fossil vertebrates is not preserved, species can only be distinguished by diagnosis of morphological features of the skeleton. Moreover, investigations of vertebrate fossils are often obstructed, because internal cranial anatomy is usually hidden and parts of the fossils may be embedded in stone matrix. As a consequence, most species of non-mammalian synapsids were only defined on the basis of external skeletal features. Our investigations on Diictodon skulls (Therapsida, Anomodontia) show that non-destructive methods are very useful to clearly distinguish fossil species. We, therefore, propose using modern non-destructive techniques such as neutron tomography, synchrotron tomography, and micro-computed tomography (μCT) as standard tools for the investigation and virtual reconstruction of fossils and to include features of the internal cranial anatomy into morphological descriptions and phylogenetic analyses of fossil vertebrates.