julilili42/papers huggingface dataset:
Energy Spectrum of Cosmic-Ray Electrons at TeV Energies
2008-12-30

The very large collection area of ground-based gamma-ray telescopes gives them a substantial advantage over balloon or satellite based instruments in the detection of very-high-energy (>600 GeV) cosmic-ray electrons. Here we present the electron spectrum derived from data taken with the High Energy Stereoscopic System (H.E.S.S.) of imaging atmospheric Cherenkov telescopes. In this measurement, the first of this type, we are able to extend the measurement of the electron spectrum beyond the range accessible to direct measurements. We find evidence for a substantial steepening in the energy spectrum above 600 GeV compared to lower energies.
Predatory behaviour of some Central European pselaphine beetles (Coleoptera: Staphylinidae: Pselaphinae) with descriptions of relevant morphological features of their heads
2008-12-30

The Pselaphinae is a large subfamily of staphylinid beetles with a characteristic habitus and small body size. Detailed morphological and behavioural studies on these beetles are scarce. In this study, specimens of Bryaxis puncticollis (Denny, 1825), Bryaxis bulbifer (Reichenbach, 1816), Bythinus burrelli (Denny, 1825), Brachygluta fossulata (Reichenbach, 1816), Rybaxis longicornis (Leach, 1817), Pselaphus heisei (Herbst, 1792) and Tyrus mucronatus (Panzer, 1803), all collected in Northern Germany, have been examined with regard to their sensory organs (eyes and antennae), mouthparts and method of capturing prey. Scanning electron microscope studies revealed sex-specific differences in the numbers of ommatidia in Bryaxis puncticollis. A multitude of different sensilla on the antennae and great differences in the shape of the mouthparts were observed and peculiarities of the antennae and maxillary palps (e.g., the segment-like appendage) were examined using scanning and transmission electron microscopy. The prey-capture behaviour of these species is described in detail for the first time based on laboratory experiments using Heteromurus nitidus (Templeton, 1835) (Collembola) as prey. This behaviour seems to be tribe specific, ranging from simple seizure with the mandibles (e.g., Rybaxis longicornis, tribe Brachyglutini) to the employment of raptorial legs (Tyrus mucronatus, tribe Tyrini). The two Bryaxis species (tribe Bythinini) even employ their apparently sticky maxillary palps to capture prey. The assumption that a viscous secretion is used by these species is supported by the finding of glandular structures in the interior of their maxillary palps. Prey-capture is preceded by a complicated preparation phase in most of the species and followed by a sequence of prey-handling movements that seem to be adapted to restrain prey such as Collembola. In simple prey-choice experiments the beetles of several species preferred small prey, irrespective of their own body size. In these experiments, Bryaxis bulbifer and Brachygluta fossulata were more successful in capturing prey than Bryaxis puncticollis and Pselaphus heisei. This might be related to their different sensory equipment and different methods of capturing prey.
Aptamers Influence the Hemostatic System by Activating the Intrinsic Coagulation Pathway in an In Vitro Chandler-Loop Model
2008-12-30

One class of oligonucleotides with a high potential for use in medical applications is short nucleic acids, widely known as aptamers. Although several aptamers are already being used clinically, there are very few studies dealing with the impact aptamers have on the hemostatic system. In this study, we have performed a comprehensive evaluation of the hemostatic system including coagulation, platelets, complement, and inflammatory activation by using different aptamer concentrations and fresh human whole blood in a well-established flow model. We found that single-stranded aptamers did not have a negative influence on platelets, complement, or inflammation but were able to activate factor XII, kallikrein, and prothrombin in a concentration-dependent manner. Consequently, the influence of aptamers on the coagulation system should be taken into consideration before the use of any aptamer-based drugs in patients.
Role of calcium in acclimation of the cyanobacterium Synechococcus elongatus PCC 7942 to nitrogen starvation
2008-12-31

A Ca 2+ signal is required for the process of heterocyst differentiation in the filamentous diazotrophic cyanobacterium Anabaena sp. PCC 7120. This paper presents evidence that a transient increase in intracellular free Ca 2+ is also involved in acclimation to nitrogen starvation in the unicellular non-diazotrophic cyanobacterium Synechococcus elongatus PCC 7942. The Ca 2+ transient was triggered in response to nitrogen step-down or the addition of 2-oxoglutarate (2-OG), or its analogues 2,2-difluoropentanedioic acid (DFPA) and 2-methylenepentanedioic acid (2-MPA), to cells growing with combined nitrogen, suggesting that an increase in intracellular 2-OG levels precedes the Ca 2+ transient. The signalling protein P II and the transcriptional regulator NtcA appear to be needed to trigger the signal. Suppression of the Ca 2+ transient by the intracellular Ca 2+ chelator N , N′ -[1,2-ethanediylbis(oxy-2,1-phenylene)]bis[ N -[2-[(acetyloxy)methoxy]-2-oxoethyl]]-,bis[(acetyloxy)methyl] ester (BAPTA-AM) inhibited expression of the glnB and glnN genes, which are involved in acclimation to nitrogen starvation and transcriptionally activated by NtcA. BAPTA-AM treatment partially inhibited expression of the nblA gene, which is involved in phycobiliprotein degradation following nutrient starvation and is regulated by NtcA and NblR; in close agreement, BAPTA-AM treatment partially inhibited bleaching following nitrogen starvation. Taken together, the results presented here strongly suggest an involvement of a defined Ca 2+ transient in acclimation of S. elongatus to nitrogen starvation through NtcA-dependent regulation.
NEW ALBIAN (EARLY CRETACEOUS) OPHIUROIDS FROM THE TLAYÚA QUARRY, PUEBLA, MEXICO
2008-12-31

Abstract: On the basis of six articulated individuals from the middle to late Albian lithographic limestone at Tlayúa near Tepexi de Rodríguez (Puebla, Mexico), a new species of ophiuroid, Ophiactis applegatei , is described. The material adds to the rather poor record of Early Cretaceous brittlestars and represents the oldest known member of the family Ophiactidae, being based on well‐preserved and articulated specimens and thus reasonably well defined morphologically. The rarity of ophiuroids, their complete preservation as well as the unnatural contortions of their arms suggest these specimens to be allochthonous, having been transported into a hostile environment where burial was rapid.
Linear models with measurement errors arising from mixture distributions
2008-12-31

The paper considers the linear model with multiplicative measurement errors. In particular, errors arising from mixture distributions will be analyzed. Such a model has to be used if the micro data have been protected by multiplicative noise. If all (continuous) variables are anonymized jointly by this approach, measurement errors will be correlated which is of special concern if the dependent variable is measured with error, too. The paper presents results for the biased naive least-squares estimator both in case of cross-section data and panel data. Moreover, derivation of consistent estimators is shortly discussed.
Transbronchial Cryobiopsy: A New Tool for Lung Biopsies
2009-01-01

&lt;i&gt;Background:&lt;/i&gt; Specimens from transbronchial lung biopsies lack sufficient quality due to crush artifact and are generally too small for diagnosis of diffuse lung diseases. Flexible cryoprobes have been shown to be useful in therapeutic bronchoscopy. We introduce a novel technique for obtaining lung biopsies bronchoscopically, using a flexible cryoprobe. &lt;i&gt;Objectives:&lt;/i&gt; The purpose of this study was to show the feasibility of using a cryoprobe to obtain lung biopsies during flexible bronchoscopy. &lt;i&gt;Methods:&lt;/i&gt; Forty-one patients with radiographic signs of diffuse lung disease were selected for transbronchial biopsy. During flexible bronchoscopy, conventional transbronchial biopsies using forceps were done first. Then a flexible cryoprobe was introduced into the selected bronchus under fluoroscopic guidance. Once brought into position, the probe was cooled and then retracted with the frozen lung tissue being attached on the probe’s tip. The tissue was processed for histology. After establishing a diagnosis, the specimen area was measured using a digital morphometry system. &lt;i&gt;Results:&lt;/i&gt; We evaluated the biopsy samples of 41 patients. The mean specimen area was 5.82 mm&lt;sup&gt;2&lt;/sup&gt; (0.58–20.88 mm&lt;sup&gt;2&lt;/sup&gt;) taken by forceps compared to 15.11 mm&lt;sup&gt;2&lt;/sup&gt; obtained using the cryoprobe (2.15–54.15 mm&lt;sup&gt;2&lt;/sup&gt;, p &lt; 0.01). Two patients had a pneumothorax which resolved with tube thoracostomy. Biopsy-associated bleeding did not require any intervention. Transbronchial cryobiopsy contributed in a substantial number of cases to a definitive diagnosis. &lt;i&gt;Conclusions:&lt;/i&gt; Transbronchial cryobiopsy is a novel technique which allows to obtain large biopsy samples of lung parenchyma that exceed the size and quality of forceps biopsy samples. Prospective trials are needed to compare this technique with surgical lung biopsy for diagnosis of diffuse lung diseases.
Phylogenetic relationships in Cortinarius, section Calochroi, inferred from nuclear DNA sequences
2009-01-01

Our analyses demonstrate that Calochroi is an exclusively northern hemispheric lineage, where species follow their host trees throughout their natural ranges within and across continents. Results of this study contribute substantially to defining European species in this group and will help to either identify or to name new species occurring across the northern hemisphere. Major groupings are in partial agreement with earlier morphology-based and molecular phylogenetic hypotheses, but some relationships were unexpected, based on external morphology. In such cases, their true affinities appear to have been obscured by the repeated appearance of similar features among distantly related species. Therefore, further taxonomic studies are needed to evaluate the consistency of species concepts and interpretations of morphological features in a more global context. Reconstruction of ancestral states yielded two major evolutionary trends within section Calochroi: (1) the development of bright pigments evolved independently multiple times, and (2) the evolution of abruptly marginate to flattened stipe bulbs represents an autapomorphy of the Calochroi clade.
Inducible Cre Mice
2009-01-01

The Cre/lox site-specific recombination system has emerged as an important tool for the generation of conditional somatic mouse mutants. This method allows one to control gene activity in space and time in almost any tissue of the mouse, thus opening new avenues for studying gene function and for establishing sophisticated animal models of human diseases. A major technical advance in terms of in vivo inducibility was the development of ligand-dependent Cre recombinases that can be activated by administration of tamoxifen to the animal. Here we describe how tamoxifen-dependent Cre recombinases, so-called CreER recombinases, work and how they can be used to generate time- and tissue-specific mouse mutants. The focus will be on the CreER(T2) recombinase, which is currently the most successful CreER version. We will give an overview of available CreER(T2) transgenic mouse lines and present protocols that detail the generation of experimental mice for inducible gene knockout studies, the induction of recombination by tamoxifen treatment, and the analysis of the quality and quantity of recombination by reporter gene and target gene studies. Most of the protocols can also be used as general guidelines for the generation and characterization of Cre/lox-mediated genome modifications in mice.
Principles of Local Drug Delivery to the Inner Ear
2009-01-01

As more and more substances have been shown in preclinical studies to be capable of preventing damage to the inner ear from exposure to noise, ototoxic drugs, ischemia, infection, inflammation, mechanical trauma and other insults, it is becoming very important to develop feasible and safe methods for the targeted delivery of drugs to specific regions in the inner ear. Recently developed methods for sampling perilymph from the cochlea have overcome major technical problems that have distorted previous pharmacokinetic studies of the ear. These measurements show that drug distribution in perilymph is dominated by passive diffusion, resulting in large gradients along the cochlea when drugs are applied intratympanically. Therefore, in order to direct drugs to specific regions of the ear, a variety of delivery strategies are required. To target drugs to the basal cochlear turn and vestibular system while minimizing exposure of the apical cochlear turns, single one-shot intratympanic applications are effective. To increase the amount of drug reaching the apical cochlear turns, repeated intratympanic injections or controlled-release drug delivery systems, such as biodegradable biopolymers or catheters and pumps, are more effective. However, if the applied substance does not easily pass through the round window membrane, or if a more widespread distribution of drug in the ear is required, then intralabyrinthine injections of the substance may be required. Intralabyrinthine injection procedures, which are currently in development in animals, have not yet been proven safe enough for human use.
Suicide for Survival - Death of Infected Erythrocytes as a Host Mechanism to Survive Malaria
2009-01-01

The pathogen of malaria, Plasmodium, enters erythrocytes and thus escapes recognition by the immune system. The pathogen induces oxidative stress to the host erythrocyte, which triggers eryptosis, the suicidal death of erythrocytes. Eryptosis is characterized by cell shrinkage, membrane blebbing and cell membrane phospholipid scrambling with phosphatidylserine exposure at the cell surface. Phosphatidylserine-exposing erythrocytes are identified by macrophages which engulf and degrade the eryptotic cells. To the extent that infected erythrocytes undergo eryptosis prior to exit of Plasmodiaand subsequent infection of other erythrocytes, the premature eryptosis may protect against malaria. Accordingly, any therapeutical intervention accelerating suicidal death of infected erythrocytes has the potential to foster elimination of infected erythrocytes, delay the development of parasitemia and favorably influence the course of malaria. Eryptosis is stimulated by a wide variety of triggers including osmotic shock, oxidative stress, energy depletion and a wide variety of xenobiotics. Diseases associated with accelerated eryptosis include sepsis, haemolytic uremic syndrome, malaria, sickle-cell anemia, beta-thalassemia, glucose-6-phosphate dehydrogenase (G6PD)-deficiency, phosphate depletion, iron deficiency and Wilson's disease. Among the known stimulators of eryptosis, paclitaxel, chlorpromazine, cyclosporine, curcumin, PGE2 and lead have indeed been shown to favourably influence the course of malaria. Moreover, sickle-cell trait, beta-thalassemia trait, glucose-6-phosphate dehydrogenase (G6PD)-deficiency and iron deficiency confer some protection against a severe course of malaria. Importantly, counteracting Plasmodia by inducing eryptosis is not expected to generate resistance of the pathogen, as the proteins involved in suicidal death of the host cell are not encoded by the pathogen and thus cannot be modified by mutations of its genes.
Evaluation of standard liver volume formulae for Chinese adults
2009-01-01

Alcoholic liver disease (ALD) and hepatitis C virus (HCV) infection represent, either alone or in combination, more than two thirds of all patients with liver disease in the Western world. This review discusses the epidemiology and combined impact of ALD and HCV on the progression of liver disease. ALD and HCV affect the progression of liver disease to liver cirrhosis and hepatocellular carcinoma (HCC) in a synergistic manner. Thus, the risk for HCC increases five times with a daily alcohol consumption of 80 g; in the presence of HCV it is increased 20-fold, and a combination of both risk factors leads to a more than 100-fold risk for HCC development. Alcohol consumption also decreases the response to interferon treatment which is probably due to a lack of compliance than a direct effect on HCV replication. Several molecular mechanisms are discussed that could explain the synergistic interaction of alcohol and HCV on disease progression. They include modulation of the immune response and apoptosis, increased oxidative stress via induction of CYP2E1 and the hepatic accumulation of iron. Thus, both HCV and alcohol independently cause hepatic iron accumulation in > 50% of patients probably due to suppression of the liver-secreted systemic iron hormone hepcidin. A better understanding of hepcidin regulation could help in developing novel therapeutic approaches to treat the chronic disease in the future. For now, it can be generally concluded that HCV-infected patients should abstain from alcohol and alcoholics should be encouraged to participate in detoxification programs.
Accelerated Clearance of Plasmodium-infected Erythrocytes in Sickle Cell Trait and Annexin-A7 Deficiency
2009-01-01

The course of malaria does not only depend on the virulence of the parasite Plasmodium but also on properties of host erythrocytes. Here, we show that infection of erythrocytes from human sickle cell trait (HbA/S) carriers with ring stages of P. falciparum led to significantly enhanced PGE(2) formation, Ca(2+) permeability, annexin-A7 degradation, phosphatidylserine (PS) exposure at the cell surface, and clearance by macrophages. P. berghei-infected erythrocytes from annexin-A7-deficient (annexin-A7(-/-)) mice were more rapidly cleared than infected wildtype cells. Accordingly, P. berghei-infected annexin-A7(-/-) mice developed less parasitemia than wildtype mice. The cyclooxygenase inhibitor aspirin decreased erythrocyte PS exposure in infected annexin-A7(-/-) mice and abolished the differences of parasitemia and survival between the genotypes. Conversely, the PGE(2)-agonist sulprostone decreased parasitemia and increased survival of wild type mice. In conclusion, PS exposure on erythrocytes results in accelerated clearance of Plasmodium ring stage-infected HbA/S or annexin-A7(-/-) erythrocytes and thus confers partial protection against malaria in vivo.
Operando X-ray absorption spectroscopy studies on Pd-SnO2 based sensors
2009-01-01

SnO2 gas sensors with palladium as additive in the range of 0.2 wt% and 3 wt% were studied by in situ X-ray absorption spectroscopy under idealized and real operating conditions. Simultaneously to the structural studies, measurements of the sensing properties were undertaken allowing for the determination of structure-function relationships. For this purpose a new in situ spectroscopic cell was designed which permitted on the one hand sensing on conventional screen printed 50 microm thick sensing layers and on the other hand structural analysis with X-rays provided by an insertion device at a 3rd generation synchrotron facility in fluorescence mode. Pd K-edge XANES and EXAFS results on gas sensors showed that palladium, present in an oxidized state, is finely dispersed if it is added in small quantities (0.2 wt%) while it forms clusters at higher concentrations (3 wt%). This is also reflected by the much easier reduction of palladium in the latter, higher concentrated ones. Under realistic sensing conditions (30-200 ppm H2; 10-50 ppm CO in dry and humid air at 200 and 300 degrees C) for the low additive concentration samples, no change in oxidation state was observed, i.e. palladium remained in its oxidized state. This has important consequences on the understanding and modeling of the gas sensing mechanism.
Influence of Paclitaxel on Parasitemia and Survival of <i>Plasmodium berghei</i> Infected Mice
2009-01-01

Paclitaxel triggers suicidal erythrocyte death or eryptosis, characterized by exposure of phosphatidylserine at the erythrocyte surface and cell shrinkage. Eryptosis of infected erythrocytes may delay development of parasitemia and thus favourably influence the course of malaria. The present study explored whether paclitaxel influences in vitro parasite growth and eryptosis of Plasmodium falciparum infected human erythrocytes and in vivo parasitemia and survival of Plasmodium berghei infected mice. Phosphatidylserine exposing erythrocytes were identified utilizing annexin V binding and erythrocyte volume was estimated from forward scatter in FACS analysis. In vitro infection of human erythrocytes with P. falciparum increased annexin binding and decreased forward scatter, effects augmented in the presence of paclitaxel (> or = 0.01 microM). Paclitaxel (> or = 0.01 microM) significantly decreased intraerythrocytic DNA/RNA content and in vitro parasitemia. In Plasmodium berghei infected mice parasitemia was significantly decreased (from 55.8% to 28.6% of circulating erythrocytes 20 days after infection) and mouse survival significantly enhanced (from 0% to 69.23% 25 days after infection) by administration of 8.5 mg/kg.b.w. of paclitaxel intraperitoneally from the eighth day of infection. In conclusion, paclitaxel decreases parasitemia and enhances survival of P. berghei infected mice, an effect, which may be due to stimulation of eryptosis and/or a direct toxic effect on the parasite.
Aging influences wound healing in patients with chronic lower extremity wounds treated in a specialized wound care center
2009-01-01

ABSTRACT With the dramatic increase in the aging population, the study and care of wounds in the elderly have become priority topics for both researchers and clinicians. The effects of aging on wound healing in humans have remained controversial. The study was a 5‐year epidemiological evaluation of standardized data collected regularly during patients' visits at a specialized Wound Care Center with the aim to determine the key factors influencing the healing of chronic lower extremity wounds. In this analysis of 1,158 chronic wounds, the frequency of wound closure was statistically significantly lower in older patients compared with younger patients. The share of closed wounds decreased by nearly 25% in the elderly patients (≥70 years). The relationship between the patient's age and the proportion of wound closure was nonlinear. The effect of aging on the frequency of wound closure of chronic wounds became clinically apparent after age 60. The chronicity of the wounds was illustrated by their recurrent nature, their long duration, the presence of multiple wounds, and the frequency of concurrent infection. Comorbidity was documented by the coprevalence of up to three underlying diseases related to impaired wound healing. The present study clearly showed that aging affects chronic wound healing negatively.
Differentiation of emotions in laughter at the behavioral level.
2009-01-01

Although laughter is important in human social interaction, its role as a communicative signal is poorly understood. Because laughter is expressed in various emotional contexts, the question arises as to whether different emotions are communicated. In the present study, participants had to appraise 4 types of laughter sounds (joy, tickling, taunting, schadenfreude) either by classifying them according to the underlying emotion or by rating them according to different emotional dimensions. The authors found that emotions in laughter (a) can be classified into different emotional categories, and (b) can have distinctive profiles on W. Wundt's (1905) emotional dimensions. This shows that laughter is a multifaceted social behavior that can adopt various emotional connotations. The findings support the postulated function of laughter in establishing group structure, whereby laughter is used either to include or to exclude individuals from group coherence.