julilili42/papers huggingface dataset:
Calcite production by the calcifying green alga Phacotus lenticularis
2018-01-04

The importance of carbonate precipitation by phytoplankton in fresh water lakes has not been sufficiently considered in global carbon cycles and climate change scenarios. The objective of this study was to determine the influence of the calcifying bivalved phytoflagellate Phacotus lenticularis (Ehrenberg) Deising 1866 on the total calcite precipitation in five European hard-water lakes. For this purpose, an accurate mass determination of single Phacotus lenticularis shells was required. We developed a novel methodological approach to precisely determine the volume and mass of the calcified shells. Focused ion beam (FIB) techniques were employed to investigate internal structural features. Thin layer cross-sections of the shell profiles were reproduced and perforation as well as the crystalline structure of the calcite plates were monitored. 3D-shell models were computed by 360° rotation of the shell cross-sections using a CAD 3D imaging software to calculate precise volumes and estimate realistic masses. In contrast to previous estimates, we determined a 2.8-fold higher shell mass of 0.86 ng CaCO3 (standard deviation SD = 0.18) for the highly massive shells at a mean volume per individual of 334.1 μm3 (SD = 70). An initial shell porosity of less than 5% was derived from thin layer cross-section images, resulting in a presumed mean shell density of 0.0026 ng μm−3. The shell diameter was significantly influenced by the lake’s origin. The shells from each lake displayed substantial variations in diameter and shape. The pores in the shells showed two variations. Wider pore canals penetrated the whole shell wall, whereas small, elongated pores were located along the interspaces between calcite crystals with tabular habit. The approximate average dimensions of these calcite plates were 1.0 × 1.6 × 0.2 μm. The mean lateral wall thickness at the rim and centre of the shell were 1.98 μm (SD = 0.42) and 0.79 μm (SD = 0.17), respectively. The average carbonate precipitation by Phacotus lenticularis in relation to the total epilimnetic suspended calcite precipitation was 6.0% in the oligotrophic lake Großer Ostersee (Bavaria, Germany). During the growing season, Phacotus lenticularis contributed up to 21% of the particulate calcium carbonate in the epilimnion. These findings suggest that Phacotus lenticularis should be considered in the assessment of hard-water lake carbon cycling.
Motivation but not valence modulates neuroticism‐dependent cingulate cortex and insula activity
2018-01-04

Abstract Neuroticism has been found to specifically modulate amygdala activations during differential processing of valence and motivation while other brain networks yet are unexplored for associated effects. The main purpose of this study was to investigate whether neural mechanisms processing valence or motivation are prone to neuroticism in the salience network (SN), a network that is anchored in the anterior cingulate cortex (ACC) and the anterior insula. This study used functional magnetic resonance imaging (fMRI) and an approach/avoid emotional pictures task to investigate brain activations modulated by pictures’ valence or motivational status between high and low neurotic individuals. We found that neuroticism‐dependent SN and the parahippocampal‐fusiform area activations were modulated by motivation but not valence. Valence in contrast interacted with neuroticism in the lateral orbitofrontal cortex. We suggested that neuroticism modulated valence and motivation processing, however, under the influence of the two distinct networks. Neuroticism modulated the motivation through the SN while it modulated the valence through the orbitofrontal networks.
Deriving seismic velocities on the micro-scale from c-axisorientations in ice cores
2018-01-04

Abstract. One of the greatest challenges in glaciology, with respect to sea level predictions, is the ability to gain information on bulk ice anisotropy in ice sheets and glaciers, which is urgently needed to improve our understanding of ice-sheet dynamics. Therefore, we investigate the effect of crystal anisotropy on seismic velocities in a glacier. We revisit the framework which is based on fabric eigenvalues to derive approximate seismic velocities by exploiting the assumed symmetry. In contrast to previous studies, we calculate the seismic velocities using the exact c-axis angles describing the orientations of the crystal ensemble in an ice-core sample. We apply this approach to fabric data sets from an Alpine (KCC) and a polar (EDML) ice core. The results allow a quantitative evaluation of the earlier approximative eigenvalue framework. Additionally, our findings highlight the variation in seismic velocity as a function of the horizontal azimuth of the seismic plane, which can be significant in case of non-symmetric orientation distributions and results in a strong azimuth-dependent shear-wave splitting. For the first time, we assess the change in seismic anisotropy that can be expected on a short spatial scale in a glacier due to a strong variability in crystal-orientation fabric. Our investigation of seismic anisotropy based on ice-core data contributes to advancing the interpretation of seismic data, with respect to extracting bulk information about crystal anisotropy without having to drill an ice core and with special regard to future applications employing ultrasonic sounding.
Early Microglia Activation Precedes Photoreceptor Degeneration in a Mouse Model of CNGB1-Linked Retinitis Pigmentosa
2018-01-05

Retinitis pigmentosa (RP) denotes a family of inherited blinding eye diseases characterized by progressive degeneration of rod and cone photoreceptors in the retina. In most cases, a rod-specific genetic defect results in early functional loss and degeneration of rods, which is followed by degeneration of cones and loss of daylight vision at later stages. Microglial cells, the immune cells of the central nervous system, are activated in retinas of RP patients and in several RP mouse models. However, it is still a matter of debate whether activated microglial cells may be responsible for the amplification of the typical degenerative processes. Here, we used <i>Cngb1</i><sup>-/-</sup> mice, which represent a slow degenerative mouse model of RP, to investigate the extent of microglia activation in retinal degeneration. With a combination of FACS analysis, immunohistochemistry and gene expression analysis we established that microglia in the <i>Cngb1</i><sup>-/-</sup> retina were already activated in an early, predegenerative stage of the disease. The evidence available so far suggests that early retinal microglia activation represents a first step in RP, which might initiate or accelerate photoreceptor degeneration.
The Comprehension of Familiar and Novel Metaphoric Meanings in Schizophrenia: A Pilot Study
2018-01-05

Miscomprehension of nonliteral ("figurative") language like metaphors, proverbs, idioms, and ironic expressions by patients with schizophrenia is a phenomenon mentioned already in historical psychiatric descriptions. However, it was only recently that studies did differentiate between novel and conventional metaphors, a factor that is known to influence the difficulty of comprehension in healthy subjects. Further, familiarity with stimuli is an important factor for comprehension, which was not recommended in utmost previous studies. In this study, 23 patients with DSM IV schizophrenia and 19 healthy control subjects performed a newly-developed German metaphor comprehension test with three types of stimuli: novel metaphors, conventional German metaphors, and meaningless statements. During the test procedure, participants indicated familiarity with the stimulus and then matched the meaning with one out of four given alternatives. Familiarity rankings did not significantly differ between patients and control subjects. However, on descriptive level, there was a tendency for healthy controls to be more familiar with conventional metaphors than schizophrenic patients. Further, comprehension of conventional and novel metaphors differed significantly between the groups, with higher performance in healthy controls. Considering only those metaphors that had been ranked as familiar, patients only revealed significant lower performance opposed to controls regarding novel metaphors, while they did not differ in conventional metaphors. Taken together, the results indicate that patients with schizophrenia might show an altered way of comprehension in novel metaphors, leading to more misunderstandings. However, their previously reported impairments in conventional metaphors might rather be due to a lack of familiarity with the stimuli-making conventional metaphors to novel metaphors in the individual case.
Left frontal hub connectivity delays cognitive impairment in autosomal-dominant and sporadic Alzheimer’s disease
2018-01-06

Patients with Alzheimer's disease vary in their ability to sustain cognitive abilities in the presence of brain pathology. A major open question is which brain mechanisms may support higher reserve capacity, i.e. relatively high cognitive performance at a given level of Alzheimer's pathology. Higher functional MRI-assessed functional connectivity of a hub in the left frontal cortex is a core candidate brain mechanism underlying reserve as it is associated with education (i.e. a protective factor often associated with higher reserve) and attenuated cognitive impairment in prodromal Alzheimer's disease. However, no study has yet assessed whether such hub connectivity of the left frontal cortex supports reserve throughout the evolution of pathological brain changes in Alzheimer's disease, including the presymptomatic stage when cognitive decline is subtle. To address this research gap, we obtained cross-sectional resting state functional MRI in 74 participants with autosomal dominant Alzheimer's disease, 55 controls from the Dominantly Inherited Alzheimer's Network and 75 amyloid-positive elderly participants, as well as 41 amyloid-negative cognitively normal elderly subjects from the German Center of Neurodegenerative Diseases multicentre study on biomarkers in sporadic Alzheimer's disease. For each participant, global left frontal cortex connectivity was computed as the average resting state functional connectivity between the left frontal cortex (seed) and each voxel in the grey matter. As a marker of disease stage, we applied estimated years from symptom onset in autosomal dominantly inherited Alzheimer's disease and cerebrospinal fluid tau levels in sporadic Alzheimer's disease cases. In both autosomal dominant and sporadic Alzheimer's disease patients, higher levels of left frontal cortex connectivity were correlated with greater education. For autosomal dominant Alzheimer's disease, a significant left frontal cortex connectivity × estimated years of onset interaction was found, indicating slower decline of memory and global cognition at higher levels of connectivity. Similarly, in sporadic amyloid-positive elderly subjects, the effect of tau on cognition was attenuated at higher levels of left frontal cortex connectivity. Polynomial regression analysis showed that the trajectory of cognitive decline was shifted towards a later stage of Alzheimer's disease in patients with higher levels of left frontal cortex connectivity. Together, our findings suggest that higher resilience against the development of cognitive impairment throughout the early stages of Alzheimer's disease is at least partially attributable to higher left frontal cortex-hub connectivity.
Development of a Deimmunized Bispecific Immunotoxin dDT2219 against B-Cell Malignancies
2018-01-06

Diphtheria toxin (DT) related targeted toxins are effective in cancer treatment, but efficacy diminishes in time because of their immunogenic potential and/or former vaccinations. In order to overcome this limitation for DT2219, a promising bispecific targeted toxin which targets CD19 and CD22, we deimmunized the DT moiety, and thereby developed an exciting improved drug (dDT2219) which still has the potential to sufficiently target B-cell malignancies but also limits clearance because of its reduced immunogenicity. The DT moiety was modified by inducing point mutations in prominent positions on the molecular surface. The new engineered dDT2219 was tested for activity, efficacy, and specificity using functional assays, proliferation assays, and flow cytometry. Furthermore, 12 samples of Chronic Lymphatic Leukemia (CLL) patients were used to assess binding. Immunogenicity was determined using a BALB/c mouse model. dDT2219 was efficient and specific against B-cell malignancies such as Bukitt-Lymphoma cell lines Daudi and Raji. dDT2219 showed specific binding on targets and on CLL samples. Intraperitoneal vaccination of immune competent mice showed that even after multiple administrations with increasing doses, induction of neutralizing antibodies was significantly lower in the dDT2219 treated animal group. The new dDT2219 combines potent anti-tumor cell activity with a reduced immunogenicity. With regard to the frequent development of neutralizing antibodies after multiple administrations with immunotoxins, dDT2219 shows promise to overcome this limitation and thus might maintain effectiveness even after multiple treatment cycles.
Genuine Violations of Laws
2018-01-07

Could laws of nature be violated, in the sense that some proposition is both a law and false? I argue that opponents of regularity theories of laws should accept the metaphysical possibility of such genuine violations. I begin with a clarification of this claim. The main argument is then developed in three steps. I first argue that opponents of regularity theory should endorse the modal-essence view: certain modal principles are essential to the laws of nature. Second, I argue that the modal-essence view entails sophisticated modal primitivism. Third, I argue from sophisticated primitivism to the metaphysical possibility of genuine violations of laws.
A quantitative survey of N Prep N constructions in Romance languages and prepositional variability
2018-01-07

The distinction between syntagmatic compounds of the type N Prep N, such as Fr. jouet d’enfant, and nominal syntagms of the type N Prep N, such as the partially equivalent Fr. jouet pour enfants, remains unclear and vague. This is mainly because the lexical and syntactic status of syntagmatic compounds still is controversial. In some cases, as in jouet d’enfant and jouet pour enfants, partial equivalent syntagmatic compounds and nominal syntagms may coexist and underlie a specific variation and alternation. In other cases, such as Pt. bracelete de aço and bracelete em aço, two variants of a syntagmatic compound may alternate and coexist. The first part of this paper provides an overview of the current discussion on these two types of constructions. The second part addresses the alternation and variation of syntagmatic compounds and nominal syntagms by means of analysis of large-scale corpus data, the French, Spanish and Portuguese corpus of the TenTen family. Here, the focus lies on the variation of the prepositional internal element of these constructions as well as on a comparison of different word formation patterns.
Prospective Clinical Trial Assessing Species-Specific Efficacy of Artemether-Lumefantrine for the Treatment of Plasmodium malariae, Plasmodium ovale, and Mixed Plasmodium Malaria in Gabon
2018-01-08

ABSTRACT Treatment recommendations for Plasmodium malariae and Plasmodium ovale malaria are largely based on anecdotal evidence. The aim of this prospective study, conducted in Gabon, was to systematically assess the efficacy and safety of artemether-lumefantrine for the treatment of patients with uncomplicated P. malariae or P. ovale species monoinfections or mixed Plasmodium infections. Patients with microscopically confirmed P. malariae , P. ovale , or mixed-species malaria with at least one of these two Plasmodium species were treated with an oral, fixed-dose combination of artemether-lumefantrine for 3 consecutive days. The primary endpoints were per-protocol PCR-corrected adequate clinical and parasitological response (ACPR) on days 28 and 42. Tolerability and safety were recorded throughout the follow-up period. Seventy-two participants (42 male and 30 female) were enrolled; 62.5% of them had PCR-corrected mixed Plasmodium infections. Per protocol, PCR-corrected ACPR rates were 96.6% (95% confidence interval [CI], 91.9 to 100) on day 28 and 94.2% (95% CI, 87.7 to 100) on day 42. Considering Plasmodium species independently from their coinfecting species, day 42 ACPR rates were 95.5% (95% CI, 89.0 to 100) for P. falciparum , 100% (exact CI, 84.6 to 100) for P. malariae , 100% (exact CI, 76.8 to 100) for P. ovale curtisi , and 90.9% (95% CI, 70.7 to 100) for P. ovale wallikeri . Study drug-related adverse events were generally mild or moderate. In conclusion, this clinical trial demonstrated satisfying antimalarial activity of artemether-lumefantrine against P. ovale wallikeri , P. ovale curtisi , P. malariae , and mixed Plasmodium infections, with per-protocol efficacies of 90% to 100% and without evident tolerability or safety concerns. (This trial was registered in the clinical study database ClinicalTrials.gov under the identifier NCT02528279.)
Diagnostic Accuracy of Simulated Low-Dose Perfusion CT to Detect Cerebral Perfusion Impairment after Aneurysmal Subarachnoid Hemorrhage: A Retrospective Analysis
2018-01-08

Purpose To evaluate diagnostic accuracy of low-dose volume perfusion (VP) computed tomography (CT) compared with original VP CT regarding the detection of cerebral perfusion impairment after aneurysmal subarachnoid hemorrhage. Materials and Methods In this retrospective study, 85 patients (mean age, 59.6 years; 62 women) with aneurysmal subarachnoid hemorrhage and who were suspected of having cerebral vasospasm at unenhanced CT and VP CT (tube voltage, 80 kVp; tube current-time product, 180 mAs) were included, 37 of whom underwent digital subtraction angiography (DSA) within 6 hours. Low-dose VP CT data sets at tube current-time product of 72 mAs were retrospectively generated by validated realistic simulation. Perfusion maps were generated from both data sets and reviewed by two neuroradiologists for overall image quality, diagnostic confidence and presence and/or severity of perfusion impairment indicating vasospasm. An interventional neuroradiologist evaluated 16 vascular segments at DSA. Diagnostic accuracy of low-dose VP CT was calculated with original VP CT as reference standard. Agreement between findings of both data sets was assessed by using weighted Cohen κ and findings were correlated with DSA by using Spearman correlation. After quantitative volumetric analysis, lesion volumes were compared on both VP CT data sets. Results Low-dose VP CT yielded good ratings of image quality and diagnostic confidence and classified all patients correctly with high diagnostic accuracy (sensitivity, 99.0%; specificity, 99.5%) without significant differences regarding presence and/or severity of perfusion impairment between original and low-dose data sets (Z = -0.447; P = .655). Findings of both data sets correlated significantly with DSA (original, r = 0.671; low dose, r = 0.667). Lesion volume was comparable for both data sets (relative difference, 5.9% ± 5.1 [range, 0.2%-25.0%; median, 4.0%]) with strong correlation (r = 0.955). Conclusion The results suggest that radiation dose reduction to 40% of original dose levels (tube current-time product, 72 mAs) may be performed in VP CT imaging of patients with aneurysmal subarachnoid hemorrhage without compromising the diagnostic accuracy regarding detection of cerebral perfusion impairment indicating vasospasm. <sup>©</sup> RSNA, 2018 Online supplemental material is available for this article.
Surpassing Simple Aggregation: Advanced Strategies for Analyzing Contextual-Level Outcomes in Multilevel Models
2018-01-08

This article introduces two advanced analytical strategies for analyzing contextual-level outcomes in multilevel models: the multilevel SEM and the two-step approach. Since these strategies are seldom used in comparative survey research, we first discuss their methodological and statistical advantages over the more commonly applied approach of group mean aggregation. We then illustrate these advantages in an empirical analysis of the effect of citizens' support for democratic values at the individual level on a contextual-level outcome – the persistence of democracy – drawing on data from the World Values Survey and the Quality of Government project. Whereas we found no significant effect of support for democratic values in the model using simple group mean aggregation, citizens' support for democratic values was a significant predictor of democracies' estimated survival rate when applying latent aggregation in multilevel SEM and the two-step approach. The article corroborates previous concerns with simple aggregation and demonstrates how researchers can improve the validity of their analyses of contextual-level outcomes by using alternative strategies of aggregation.
Vitality of lichens under different light climates in an Araucaria forest (Pró-Mata RS, South Brazil) as determined by chlorophyll fluorescence
2018-01-08

ABSTRACT The vitality of 64 lichen species (107 individual lichen thalli) growing under different light climates in an Araucaria forest in South Brazil was analyzed by chlorophyll fluorescence. Study sites were grouped according to their local light availability under full sunlight (about 2200 μmol m-2 s-1): 1 = low light, up to 20 μmol m-2 s-1; 2 = medium light, 20 to 100 μmol m-2 s-1; and 3 = high light, more than 100 μmol m-2 s-1. Maximum quantum yield of photosystem II, as shown by Fv/Fm of dark-adapted samples, was mainly between 0.3 and 0.7, with extremes of below 0.1 and up to 0.85. On average, yields were highest with low light availability (0.66). Groups 1 and 2 were not significantly different from each other, but groups 1 and 3, as well as groups 2 and 3 were. After dark adaptation, lichens were exposed to different light intensities by means of a chlorophyll fluorometer. The results show that low light-adapted lichens exhibit the highest sensitivity to excess light, as was also indicated by the data for non-photochemical quenching. Thus, shade-adapted lichens are obviously well protected from possible damage caused by excess light, which is important when exposed to sun flecks.
Spin Dependence of η Meson Production in Proton-Proton Collisions Close to Threshold
2018-01-08

Taking advantage of the high acceptance and axial symmetry of the WASA-at-COSY detector, and the high polarization degree of the proton beam of COSY, the reaction p[over →]p→ppη has been measured close to threshold to explore the analyzing power A_{y}. The angular distribution of A_{y} is determined with the precision improved by more than 1 order of magnitude with respect to previous results, allowing a first accurate comparison with theoretical predictions. The determined analyzing power is consistent with zero for an excess energy of Q=15 MeV, signaling s-wave production with no evidence for higher partial waves. At Q=72 MeV the data reveal strong interference of Ps and Pp partial waves and cancellation of (Pp)^{2} and Ss^{*}Sd contributions. These results rule out the presently available theoretical predictions for the production mechanism of the η meson.