julilili42/papers huggingface dataset:
A Cell-penetrating Peptide Derived from Human Lactoferrin with Conformation-dependent Uptake Efficiency
2009-10-27

The molecular events that contribute to the cellular uptake of cell-penetrating peptides (CPP) are still a matter of intense research. Here, we report on the identification and characterization of a 22-amino acid CPP derived from the human milk protein, lactoferrin. The peptide exhibits a conformation-dependent uptake efficiency that is correlated with efficient binding to heparan sulfate and lipid-induced conformational changes. The peptide contains a disulfide bridge formed by terminal cysteine residues. At concentrations exceeding 10 mum, this peptide undergoes the same rapid entry into the cytoplasm that was described previously for the arginine-rich CPPs nona-arginine and Tat. Cytoplasmic entry strictly depends on the presence of the disulfide bridge. To better understand this conformation dependence, NMR spectroscopy was performed for the free peptide, and CD measurements were performed for free and lipid-bound peptide. In solution, the peptides showed only slight differences in secondary structure, with a predominantly disordered structure both in the presence and absence of the disulfide bridge. In contrast, in complex with large unilamellar vesicles, the conformation of the oxidized and reduced forms of the peptide clearly differed. Moreover, surface plasmon resonance experiments showed that the oxidized form binds to heparan sulfate with a considerably higher affinity than the reduced form. Consistently, membrane binding and cellular uptake of the peptide were reduced when heparan sulfate chains were removed.
The Mesenchymal Stem Cell Antigen MSCA-1 is Identical to Tissue Non-specific Alkaline Phosphatase
2009-10-27

We have recently identified 2 distinct CD271(bright)MSCA-1(dim)CD56(+) and CD271(bright)MSCA-1(bright)CD56(-) MSC subsets in primary femur-derived bone marrow (BM), which differ in their expression pattern and morphology as well as in their clonogenic and differentiation capacity. Here, we show that MSCA-1 is identical to tissue non-specific alkaline phosphatase (TNAP), an ectoenzyme known to be expressed at high levels in liver, bone, and kidney as well as in embryonic stem (ES) cells. SDS-PAGE of WERI-RB-1 cell lysate and supernatant from phosphatidylinositol-specific phospholipase C (PI-PLC)-treated WERI-RB-1 cells resulted in the appearance of a prominent 68-kDa band. Matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDITOF MS) sequence analysis revealed TNAP-specific peptides. Screening of the MSCA-1-specific antibody W8B2 on HEK-293 cells transfected with the full-length coding sequence of TNAP showed specific reactivity with transfected but not with parent cell line. In addition, TNAP-specific mRNA expression was selectively detected in the transfectant line. In agreement with these findings, enzymatic activity of TNAP was exclusively detected in sorted MSCA-1(+) BM cells but not in the MSCA-1(-) negative fraction. Surface marker analysis revealed coexpression of the embryonic marker SSEA-3 but not SSEA-4, TRA-1-60, and TRA-1-81. In endometrium, TNAP is expressed at intermediate levels on CD146(+) cells and at high levels in the luminal space of glandular epithelia. Our results demonstrate that TNAP is a selective marker for the prospective isolation of BM-derived MSC and MSC-like cells in endometrium.
De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation
2009-10-27

Abstract De novo sequencing of peptides using tandem MS is difficult due to missing fragment ions in the spectra commonly obtained after CID of peptide precursor ions. Complementing CID spectra with spectra obtained in an ion‐trap mass spectrometer upon electron transfer dissociation (ETD) significantly increases the sequence coverage with diagnostic ions. In the de novo sequencing algorithm CompNovo presented here, a divide‐and‐conquer approach was combined with an efficient mass decomposition algorithm to exploit the complementary information contained in CID and ETD spectra. After optimizing the parameters for the algorithm on a well‐defined training data set obtained for peptides from nine known proteins, the CompNovo algorithm was applied to the de novo sequencing of peptides derived from a whole protein extract of Sorangium cellulosum bacteria. To 2406 pairs of CID and ETD spectra contained in this data set, 675 fully correct sequences were assigned, which represent a success rate of 28.1%. It is shown that the CompNovo algorithm yields significantly improved sequencing accuracy as compared with published approaches using only CID spectra or combined CID and ETD spectra.
Higher α‐olefins carbonylation in aqueous media by Pd(II) catalysts modified with substituted diphosphine ligands: Aqueous polyketone latices with high solid contents and molecular weights
2009-10-27

Abstract Water‐soluble palladium complexes ci s‐[Pd(L)(OAc) 2 ] ( 1–8 ) (L represents a diphosphine ligands of the general formula CH 2 (CH 2 PR 2 ) 2 , where for a : R  (CH 2 ) 6 OH; b–g : R  (CH 2 ) n P(O)(OEt) 2 , n = 2–6 and n = 8; h : R  (CH 2 ) 3 NH 2 ) have been employed, after activation with a large excess of HBF 4 , for emulsion polymerization of alkenes (propene, butene, and their equimolar mixtures) with carbon monoxide. Aliphatic polyketone lattices with a high solid content (21%), high molecular weight (6.3 × 10 4 g mol −1 ), and narrow polydispersities ( M w / M n ≈ 2) were isolated. The catalytic activity of the dicationic palladium (II) based catalysts, C1–C8 is highly dependent on the length of the alkyl chain of the ligand. Catalyst 3 proved to be highly active for propene/CO copolymers, whereas 6 is active for butene/CO and propene/CO‐butene/CO systems. The presence of methyl β‐cyclodextrin, as a phase‐transfer agent, and undecenoic acid, as an emulsifier, increase the molar mass and the stability of the polyketones and finally the activity of the catalyst. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 6715–6725, 2009
Levels of sCD40, sCD40L, TNFα, and TNF-RI in the Culprit Coronary Artery During Myocardial Infarction
2009-10-27

BackgroundInflammatory processes are involved in the pathogenesis of coronary artery disease and acute myocardial infarction (AMI). Yet there is little known about concentrations of pro-inflammatory mediators in the cardiac milieu of patients suffering from AMI. The aim of this study was to evaluate blood samples directly obtained from the culprit coronary artery during AMI.
Geochemistry of magmatic rocks and time constraints on deformational phases and shear zone slip in the Méiganga area, central Cameroon
2009-10-28

The Méiganga area is situated in the Adamawa–Yadé domain (AYD) of the Pan-African fold belt in Cameroon. The AYD is characterized by abundant plutonic rocks that intruded Palaeoproterozoic gneisses. It is cut by the transcurrent Central Cameroonian Shear Zone (CCSZ). The studied area is made up of metadiorite (MD), pyroxene-bearing granite (PGr) and biotite-muscovite granite (BMGr), hosted in a metasedimentary sequence of amphibole-biotite gneisses. The granitoids are metaluminous to slightly peraluminous, and mainly of I-type (ASI ≤ 1.1), representing a high-K calc-alkaline to shoshonitic suite. They were derived from crustal protoliths (BMGr), from rocks of mantle origin (MD, PGr), and/or from the remelting of metabasalt or metatonalite (MD, PGr). Four successive deformational phases (D1, D2, D3, and D4) are present in the Méiganga area. The S1 foliation is formed by tectonic transposition of the S0 primitive surface represented by contacts between the gneiss and intercalated amphibolites. The synmigmatitic D2 deformational phase is characterized by S2 banded schistosity, S2/C2 sinistral shear planes, and F2 folds with axes parallel to a L2 stretching lineation. Imprints of the D2 and subsequent deformational phases are similar in the metadiorite and host rocks, implying syn-D2 emplacement and crystallization of the metadiorite; therefore 614–619 Ma 207Pb/206Pb zircon evaporation ages obtained for this rock type date the syn-D2 magmagenesis. Similarly, the D3 phase of the PGr is 601 ± 1 Ma, dated by the 207Pb/206Pb evaporation method. D4 is a late-stage brittle deformational phase. Sinistral movement of the CCSZ is associated with D2, whereas its latest activity, characterized by dextral slip, cannot be older than emplacement of the 558 ± 2 Ma BMGr (207Pb/206Pb zircon evaporation age).
Neurobehavioral Tests in Rat Models of Degenerative Brain Diseases
2009-10-28

Each translational approach in medical research forces the establishment of neurobehavioral screening systems, dedicated to fill the gap between postgenomic generation of state-of-the-art animal models (i.e. transgenic rats) on the one hand and their added value for really predictive experimental preclinical therapy on the other. Owing to these developments in the field, neuroscientists are frequently challenged by the task of detecting discrete behavioral differences in rats. Systematic, comprehensive phenotyping covers these needs and represents a central part of the process. In this chapter, we provide an overview on theoretical issues related to comprehensive neurobehavioral phenotyping of rats and propose specific classical procedures, protocols (similar to the SHIRPA approach in mice), as well as techniques for repeated, intraindividual phenotyping. Neurological testing of rats, motorfunctional screening using the accelerod approach, emotional screening using the social interaction test of anxiety, and testing of sensorimotoric gating functions by prepulse inhibition of the startle response are provided in more detail. This description is completed by an outlook on most recent developments in the field dealing with automated, intra-home-cage technologies, allowing continuous screening in rats in various behavioral and physiological dimensions on an ethological basis.
Neodymium Dioxide Carbonate as a Sensing Layer for Chemoresistive CO2 Sensing
2009-10-29

We report the synthesis of neodymium hydroxide nanoparticles via a nonaqueous and surfactant-free sol−gel process and their subsequent thermal transformation into neodymium dioxide carbonate, which can be applied as a sensing layer for resistive-readout CO2 sensing. The sensors show an increase in resistance when exposed to CO2 in both dry and humid air in the operation temperature range of 250−400 °C, with a maximum sensor signal of 4 in humid air at 350 °C in 1000 ppm CO2. Another important feature of the sensor is the fact that exposure to water vapor leads to a pronounced decrease in resistance (opposite of the CO2 effect), which indicates different charge-transfer mechanisms. The CO2 gas-sensing mechanism was studied via the Operando approach, by performing direct-current (DC) resistance and diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS) measurements simultaneously under operation conditions. This combination enables the correlation of any concentration changes of specific surface species with electrical effects. The correlation found between the concentration of surface-adsorbed OH and carbonate species and the electrical conductivity suggests that the reaction between CO2 and water-related surface species is responsible for the gas-sensing effect.
Implications of Postprandial Glucose and Weight Control in People With Type 2 Diabetes
2009-10-29

The International Diabetes Federation (IDF) recently published guidelines for the management of postmeal hyperglycemia. These guidelines were established in view of the risk of postmeal hyperglycemia for vascular events. Because of the rising incidence and prevalence of diabetes and its complications, the IDF took action to state useful strategies for the treatment of diabetes, focusing on the detection and therapy of postprandial hyperglycemia. Besides nonpharmacological measures (blood glucose self-control and diet), drugs such as short-acting insulinotropic agents (sulfonylureas and glinides), glucosidase inhibitors, insulin, and incretin-based therapies can specifically be used to act on postmeal glucose elevations. The specific action profiles of these agents are shown and discussed with respect to the IDF guidelines. Type 2 diabetes is a chronic and progressive disease that affects ∼250 million people worldwide today, with an increasing incidence in the years to come (1). With this epidemic dimension, type 2 diabetes is of global concern. Poor control of the disease is a leading cause of death in most developed countries and is associated with microvascular complications (renal failure and blindness due to retinopathy) and macrovascular complications (cardiovascular disease and stroke) as well as neurological complications such as diabetic neuropathy. Macrovascular complications are the major cause of death in type 2 diabetic patients (2–7). Numerous epidemiological studies have shown that postprandial hyperglycemia substantially adds to the micro- and macrovascular risk not only in type 1 and type 2 diabetes, but already in impaired glucose tolerance (2–4,8). The associations between postmeal hyperglycemia and markers of cardiovascular disease such as oxidative stress, inflammation, endothelial dysfunction, and carotid IMT have been well characterized. In addition, postprandial hyperglycemia has also been connected with the incidence of carcinomas and cognitive dysfunction in elderly type 2 diabetic patients (9–11). Large intervention trials ...
Exercise Dependent Pleurisy in a Soccer Athlete
2009-10-29

Except for traumatic or spontaneous pneumothorax, little information is known about exercise associated pleural pathologies. We present the case of a 22-year-old athlete with symptoms of musculoskeletal disorders of his upper back after a first league soccer match. Clinical examination initially showed a blockage of the costotransversal joints six and seven with subsequent muscular tension representing an interscapulovertebral pain syndrom. Temporary complete pain relief with following severe reoccurrence of symptomes led to further diagnostic procedures after 3 days. Contrast Enhanced Magnetic Resonance Images (CE-MRI) surprisingly revealed an intrathoracic tumenescence in front of the cardiac apex with surrounding pleural effusion. After excluding all alternative diagnosis for unclear pleurisy we assumed an exercise dependent local pleurisy with subsequent pleural effusion due to local friction by a posttraumatic intrathoracic hematoma. Several invasive and non-invasive therapeutical options were discussed in this rare case with a final decision for a conservative strategy. Seven weeks after injury the player was able to return to play. Even if musculoskeletal problems are most likely in high impact athletes, referred pain due to less common disorders has always to be kept in mind.
Revisiting strategies for reducing the seedbank of Orobanche and Phelipanche spp.
2009-10-30

Summary Weedy Orobanche and Phelipanche species are important in Southern and Eastern Europe, the Middle East and North Africa, and have recently been reported in the USA, Australia and some countries in South America. Rather than being controlled, the Orobanche and Phelipanche problem is increasing, both in intensity and in acreage. Large areas of new territory are at risk of invasion, if care is not immediately taken to limit the introduction of parasitic seeds and to educate farmers and others to be alert for new infestations. There is an urgent need to re‐evaluate novel integrated Orobanche and Phelipanche management programmes that will allow a better control of the parasite species and limit their distribution. The main obstacle in the long‐term management of Orobanche and Phelipanche infested fields is the durable seedbank, which may remain viable for decades in the field. Large quantities of long‐lived seeds give the parasite genetic adaptability to changes in host resistance and cultural practices. As long as the seedbank is not controlled, the need to control the parasite will persist whenever a susceptible host is grown in the infested field. We discuss strategies for seedbank reduction, paying particular attention to cultural practices, whereas chemical and biological control methods are covered by other reviews in this issue.
Outcome of suicidal patients with schizophrenia: results from a naturalistic study
2009-10-30

Schennach‐Wolff R, Jäger M, Seemüller F, Obermeier M, Schmauss M, Laux G, Pfeiffer H, Naber D, Schmidt LG, Gaebel W, Klosterkötter J, Heuser I, Maier W, Lemke MR, Rüther E, Klingberg S, Gastpar M, Möller H‐J, Riedel M. Outcome of suicidal patients with schizophrenia: results from a naturalistic study. Objective: Purpose was to assess suicidality before and at the time of admission in patients with schizophrenia and compare outcome differences. Method: Biweekly PANSS (Positive and Negative Syndrome Scale), HAMD (Hamilton Depression Rating Scale) and UKU (Udvalg for Klinske Undersogelser Side Effect Rating Scale) ratings were evaluated in 339 in‐patients with schizophrenic spectrum disorders. Response was defined as an initial 20% PANSS total score reduction at discharge, remission was defined according to the proposed consensus criteria by the Remission in Schizophrenia Working Group. Results: Suicidal patients (22%) scored significantly higher on the PANSS negative subscore, PANSS insight item and HAMD total score at admission and at discharge. They developed significantly more side effects. No differences were found concerning response and remission between the two patient subgroups. Conclusion: Despite receiving significantly more antidepressants the suicidal patients suffered from significantly more depressive symptoms up to discharge, yet without differing regarding response and remission.
Can International Migration Ever be Made a Pareto Improvement?
2009-10-30

We argue that compensating losers is more difficult for immigration than for trade and capital movements. While a tax-cum-subsidy mechanism allows the government to turn the gains from trade into a Pareto improvement, the same is not true for the so-called immigration surplus, if the redistributive mechanism is not allowed to discriminate against migrants. We discuss policy conclusions to be drawn from this fundamental asymmetry between migration and other forms of globalization.
Detecting the Same Individual Protein and Its Photoproducts via Fluorescence and Surface-Enhanced Raman Spectroscopic Imaging
2009-10-30

We present a novel multiparameter microscopy approach allowing for both fluorescence and Raman imaging and spectroscopy of the same individual autofluorescent protein and its photoproduct by colocalization of the same species in the respective spectroscopic images. For the investigated bichromophoric autofluorescent protein DsRed_N42H we are able to assign different Raman spectra to the photoproducts of the distinct chromophores. Furthermore, a careful analysis of Raman spectra taken from native proteins in comparison to Raman spectra from photobleached species allows for a feasible estimation of the underlying photodegeneration processes of the individual spectral forms.
The Effect of Ambient Illuminance on the Development of Deprivation Myopia in Chicks
2009-11-01

Exposing chicks to high illuminances, either sunlight or intense laboratory lights, retards the development of experimental myopia. These results, in conjunction with recent epidemiologic findings, suggest that daily exposure to high light levels may have a protective effect against the development of school-age myopia in children.
Amplification of chromosomal segment 4q12 in non-small cell lung cancer
2009-11-01

In cancer, proto-oncogenes are often altered by genomic amplification. Here we report recurrent focal amplifications of chromosomal segment 4q12 overlapping the proto-oncogenes PDGFRA and KIT in non-small cell lung cancer (NSCLC). Single nucleotide polymorphism (SNP) array and fluorescent in situ hybridization (FISH) analysis indicate that 4q12 is amplified in 3-7% of lung adenocarcinomas and 8-10% of lung squamous cell carcinomas. In addition, we demonstrate that the NSCLC cell line NCI-H1703 exhibits focal amplification of PDGFRA and is dependent on PDGFRalpha activity for cell growth. Treatment of NCI-H1703 cells with PDGFRA-specific shRNAs or with the PDGFRalpha/KIT small molecule inhibitors imatinib or sunitinib leads to cell growth inhibition. However, these observations do not extend to NSCLC cell lines with lower-amplitude and broader gains of chromosome 4q. Together these observations implicate PDGFRA and KIT as potential oncogenes in NSCLC, but further study is needed to define the specific characteristics of those tumors that could respond to PDGFRalpha/KIT inhibitors.
A revision ofPlesiobaena(Testudines: Baenidae) and an assessment of baenid ecology across the K/T boundary
2009-11-01

Over the course of the last two decades, the baenid taxon Plesiobaena has typically been thought to consist of two named species, Plesiobaena antiqua (Campanian) and Plesiobaena putorius (Paleocene), along with an unnamed species from the Maastrichtian, but the interrelationship of these three taxa was never explored in an explicit phylogenetic context. Herein we present or re-describe a number of relevant specimens and provide a cladistic analysis of Baenidae using species only as terminal taxa. The phylogenetic analysis clearly reveals that Plesiobaena in the traditional sense is a paraphyletic assemblage relative to the clade formed by Gamerabaena sonsalla and Palatobaena spp., thus demanding some nomenclatural adjustments. In particular, Plesiobaena putorius is moved to a new genus, Cedrobaena , and the unnamed taxon from the Maastrichtian is formally named Peckemys brinkman. Many of the new Cedrobaena putorius and Peckemys brinkman specimens described herein were found at the Turtle Graveyard locality in Slope County, North Dakota, along with four other turtle taxa, increasing the turtle diversity of this locality to at least six taxa. Although this indicates that Turtle Graveyard is the world's most diverse fossil turtle thanatocoenosis, a comparable diversity is found in modern river systems in the southeastern United States today. Our phylogenetic analysis indicates that seven out of nine latest Cretaceous baenid turtle lineages survived into the Paleocene, four of which are interpreted as being durophagous.
Three-Dimensional Assessment of Facial Development in Children With Pierre Robin Sequence
2009-11-01

Newborns with Pierre Robin sequence (PRS) have mandibular hypoplasia, glossoptosis, and possibly cleft palate. Their facial appearance is characteristic. The further facial development is controversial. The aim of this study was to analyze the facial development of children with PRS.In a prospective, cross-sectional study, 344 healthy children and 37 children with PRS and cleft palate younger than 8 years were scanned three-dimensionally. Twenty-one standard anthropometric landmarks were identified, and the images were superimposed. Growth curves for normal facial development were calculated. The facial morphology of children with PRS was compared with that of healthy children.The facial growth of children with PRS in the transversal and vertical direction was normal. In the sagittal direction, the mandibular deficit was confirmed. Except for the orbital landmarks and nasion, all landmarks of the midface demonstrated a significant sagittal deficit. This difference to healthy children remained constant for all ages.Our study cannot support the theory of mandibular catch-up growth. The sagittal deficit of the midface could be observed in all ages. This indicates that children with PRS have a very early, severe, and persistent underdevelopment of this part of the face. We conclude that this disturbance must be addressed in early childhood with orthodontic and speech therapy.