josteece/github-issues huggingface dataset:
Dataset.to_csv() missing commas in columns with lists
Opened by mpickard-dataprof (open)

### Describe the bug

The `to_csv()` method does not output commas in lists.  So when the Dataset is loaded back in the data structure of the column with a list is not correct.

Here's an example:

Obviously, it's not as trivial as inserting commas in the list, since its a comma-separated file.  But hopefully there's a way to export the list in a way that it'll be imported by `load_dataset()` correctly.

### Steps to reproduce the bug

Here's some code to reproduce the bug:


```python
from datasets import Dataset

ds = Dataset.from_dict(
    {
        "pokemon": ["bulbasaur", "squirtle"],
        "type": ["grass", "water"]
    }
)

def ascii_to_hex(text):
    return [ord(c) for c in text]

ds = ds.map(lambda x: {"int": ascii_to_hex(x['pokemon'])})

ds.to_csv('../output/temp.csv')
```

temp.csv then contains:
```

### Expected behavior

ACTUAL OUTPUT:
```
pokemon,type,int
bulbasaur,grass,[ 98 117 108  98  97 115  97 117 114]
squirtle,water,[115 113 117 105 114 116 108 101]
```

EXPECTED OUTPUT:
```
pokemon,type,int
bulbasaur,grass,[98, 117, 108,  98,  97, 115,  97, 117, 114]
squirtle,water,[115, 113, 117, 105, 114, 116, 108, 101]
```

or probably something more like this since it's a CSV file:
```
pokemon,type,int
bulbasaur,grass,"[98, 117, 108,  98,  97, 115,  97, 117, 114]"
squirtle,water,"[115, 113, 117, 105, 114, 116, 108, 101]"
```

### Environment info

### Package Version
Name: datasets
Version: 2.16.1

### Python
version: 3.10.12


### OS Info
PRETTY_NAME="Ubuntu 22.04.4 LTS"
NAME="Ubuntu"
VERSION_ID="22.04"
VERSION="22.04.4 LTS (Jammy Jellyfish)"
VERSION_CODENAME=jammy
ID=ubuntu
ID_LIKE=debian
...
UBUNTU_CODENAME=jammy

Comments:
Hello!

This is due to how pandas write numpy arrays to csv. [Source](https://stackoverflow.com/questions/54753179/to-csv-saves-np-array-as-string-instead-of-as-a-list)
To fix this, you can convert them to list yourselves.

```python
df = ds.to_pandas()
df['int'] = df['int'].apply(lambda arr: list(arr))
df.to_csv(index=False, '../output/temp.csv')
```

I think it would be good if `datasets` would do the conversion itself, but it's a breaking change and I would wait for the greenlight from someone from HF.
Generating split is very slow when Image format is PNG
Opened by Tramac (open)

### Describe the bug

When I create a dataset, it gets stuck while generating cached data. 
The image format is PNG, and it will not get stuck when the image format is jpeg.

![image](https://github.com/huggingface/datasets/assets/22740819/3b888fd8-e6d6-488f-b828-95a8f206a152)

After debugging, I know that it is because of the `pa.array` operation in [arrow_writer](https://github.com/huggingface/datasets/blob/2.13.0/src/datasets/arrow_writer.py#L553), but i don't why.

### Steps to reproduce the bug

```
from datasets import Dataset

def generator(lines):
    for line in lines:
        img = Image.open(open(line["url"], "rb"))
        # print(img.format)  # "PNG"
        yield {
            "image": img,
        }

lines = open(dataset_path, "r")
dataset = Dataset.from_generator(
    generator,
    gen_kwargs={"lines": lines}
)
```

### Expected behavior

Generating split done.

### Environment info

datasets    2.13.0

Comments:
I think this is due to the speed of reading a `png` image using pillow compared to a `jpg` image.
Notably the same is true with `tiff`, it is even faster than `jpg` in my case.
(Willing to PR) Datasets with custom python objects
Opened by fzyzcjy (open)

### Feature request

Hi thanks for the library! I would like to have a huggingface Dataset, and one of its column is custom (non-serializable) Python objects. For example, a minimal code:

```
class MyClass:
    pass

dataset = datasets.Dataset.from_list([
    dict(a=MyClass(), b='hello'),
])
```

It gives error:

```
ArrowInvalid: Could not convert <__main__.MyClass object at 0x7a852830d050> with type MyClass: did not recognize Python value type when inferring an Arrow data type
```

I guess it is because Dataset forces to convert everything into arrow format. However, is there any ways to make the scenario work? Thanks!

### Motivation

(see above)

### Your contribution

Yes, I am happy to PR!

Cross-posted: https://discuss.huggingface.co/t/datasets-with-custom-python-objects/79050?u=fzyzcjy

EDIT: possibly related https://github.com/huggingface/datasets/issues/5766

Comments:
Compatibility issue between s3fs, fsspec, and datasets
Opened by njbrake (closed)

### Describe the bug

Here is the full error stack when installing:

```
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
datasets 2.18.0 requires fsspec[http]<=2024.2.0,>=2023.1.0, but you have fsspec 2024.3.1 which is incompatible.
Successfully installed aiobotocore-2.12.1 aioitertools-0.11.0 botocore-1.34.51 fsspec-2024.3.1 jmespath-1.0.1 s3fs-2024.3.1 urllib3-2.0.7 wrapt-1.16.0
```
When I install with pip, pip allows this error to exist while still installing s3fs, but this error breaks poetry, since poetry will refuse to install s3fs because of the dependency conflict.

Maybe I'm missing something so maybe it's not a bug but some mistake on my end? Any input would be helpful. Thanks!

### Steps to reproduce the bug

1. conda create -n tmp python=3.10 -y
2. conda activate tmp
3. pip install datasets
4. pip install s3fs

### Expected behavior

I would expect there to be no error.

### Environment info

MacOS (ARM), Python3.10, conda 23.11.0. 

Comments:
Hi! Instead of running `pip install` separately for each package, you should pass all the packages to a single `pip install` call (in this case, `pip install datasets s3fs`) to let `pip` properly resolve their versions.

> Hi! Instead of running `pip install` separately for each package, you should pass all the packages to a single `pip install` call (in this case, `pip install datasets s3fs`) to let `pip` properly resolve their versions.

Thanks so much! My inexperience with pip is showing 😆  🙈 

> Hi! Instead of running `pip install` separately for each package, you should pass all the packages to a single `pip install` call (in this case, `pip install datasets s3fs`) to let `pip` properly resolve their versions.

you are awesome bro

Hey, the suggestion by @mariosasko unfortunately only address this issue via pip. The original message was about poetry and I am still facing a dependency conflict with that.

The following command complains first about `fsspec` (`... no versions of fsspec match ...`) and then I get an error.

Command:
`poetry add datasets s3fs` 

Error: 
` ... your project ... depends on both datasets (^3.1.0) and s3fs (^2024.10.0), version solving failed`

Installing first `s3fs` and then the rest of the huggingface libraries, like `datasets`, also did not help.
load_dataset can't work with symbolic links
Opened by VladimirVincan (open)

### Feature request

Enable the `load_dataset` function to load local datasets with symbolic links. 

E.g, this dataset can be loaded:
├── example_dataset/
│   ├── data/
│   │   ├── train/
│   │   │   ├── file0
│   │   │   ├── file1
│   │   ├── dev/
│   │   │   ├── file2
│   │   │   ├── file3
│   ├── metadata.csv

while this dataset can't:
├── example_dataset_symlink/
│   ├── data/
│   │   ├── train/
│   │   │   ├── sym0 -> file0
│   │   │   ├── sym1 -> file1
│   │   ├── dev/
│   │   │   ├── sym2 -> file2
│   │   │   ├── sym3 -> file3
│   ├── metadata.csv

I have created an example dataset in order to reproduce the problem:

1. Unzip `example_dataset.zip`.
2. Run `no_symlink.sh`. Training should start without issues. 
3. Run `symlink.sh`. You will see that all four examples will be in train split, instead of having two examples in train and two examples in dev. The script won't load the correct audio files.

[example_dataset.zip](https://github.com/huggingface/datasets/files/14807053/example_dataset.zip)

### Motivation

I have a very large dataset locally. Instead of initiating training on the entire dataset, I need to start training on smaller subsets of the data. Due to the purpose of the experiments I am running, I will need to create many smaller datasets with overlapping data. Instead of copying the all the files for each subset, I would prefer copying symbolic links of the data. This way, the memory usage would not significantly increase beyond the initial dataset size.

Advantages of this approach:

- It would leave a smaller memory footprint on the hard drive
- Creating smaller datasets would be much faster

### Your contribution

I would gladly contribute, if this is something useful to the community. It seems like a simple change of code, something like `file_path = os.path.realpath(file_path)` should be added before loading the files. If anyone has insights on how to incorporate this functionality, I would greatly appreciate your knowledge and input.

Comments:
In fact,You can use a hard link instead of a symbolic link.Hard link works
Fix issue with case sensitivity when loading dataset from local cache
Opened by Sumsky21 (open)

When a dataset with upper-cases in its name is first loaded using `load_dataset()`, the local cache directory is created with all lowercase letters. 

However, upon subsequent loads, the current version attempts to locate the cache directory using the dataset's original name, which includes uppercase letters. This discrepancy can lead to confusion and, particularly in offline mode, results in errors. 

### Reproduce
```bash
~$ python            
Python 3.9.19 (main, Mar 21 2024, 17:11:28) 
[GCC 11.2.0] :: Anaconda, Inc. on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> from datasets import load_dataset
>>> dataset = load_dataset("locuslab/TOFU", "full")
>>> quit()

~$ export HF_DATASETS_OFFLINE=1 
~$ python                      
Python 3.9.19 (main, Mar 21 2024, 17:11:28) 
[GCC 11.2.0] :: Anaconda, Inc. on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> from datasets import load_dataset
>>> dataset = load_dataset("locuslab/TOFU", "full")
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "xxxxxx/anaconda3/envs/llm/lib/python3.9/site-packages/datasets/load.py", line 2556, in load_dataset
    builder_instance = load_dataset_builder(
  File "xxxxxx/anaconda3/envs/llm/lib/python3.9/site-packages/datasets/load.py", line 2228, in load_dataset_builder
    dataset_module = dataset_module_factory(
  File "xxxxxx/anaconda3/envs/llm/lib/python3.9/site-packages/datasets/load.py", line 1871, in dataset_module_factory
    raise ConnectionError(f"Couldn't reach the Hugging Face Hub for dataset '{path}': {e1}") from None
ConnectionError: Couldn't reach the Hugging Face Hub for dataset 'locuslab/TOFU': Offline mode is enabled.
>>> 
```

I fix this issue by lowering the dataset name (`.lower()`) when generating cache_dir.

Comments:
I also need this feature for ["Cnam-LMSSC/vibravox "](https://huggingface.co/datasets/Cnam-LMSSC/vibravox)


EDIT: Upgrading to `2.19.0` fixed my problem thanks to [this PR](https://github.com/huggingface/datasets/pull/6754)
Persistent multi-process Pool
Opened by fostiropoulos (open)

### Feature request

Running .map and filter functions with `num_procs` consecutively instantiates several multiprocessing pools iteratively. 

As instantiating a Pool is very resource intensive it can be a bottleneck to performing iteratively filtering. 

My ideas:
1. There should be an option to declare `persistent_workers` similar to pytorch DataLoader. Downside would be that would be complex to determine the correct resource allocation and deallocation of the pool. i.e. the dataset can outlive the utility of the pool. 
2. Provide a pool as an argument. Downside would be the expertise required by the user. Upside, is that there is better resource management.

### Motivation

Is really slow to iteratively perform map and filter operations on a dataset.

### Your contribution

If approved I could integrate it. I would need to know what method would be most suitable to implement from the two options above.

Comments:
Passing `sample_by` to `load_dataset` when loading text data does not work
Opened by ntoxeg (closed)

### Describe the bug

I have a dataset that consists of a bunch of text files, each representing an example. There is an undocumented `sample_by` argument for the `TextConfig` class that is used by `Text` to decide whether to split files into lines, paragraphs or take them whole. Passing `sample_by=“document”` to `load_dataset` results in files getting split into lines regardless. I have edited `src/datasets/packaged_modules/text/text.py` for myself to switch the default and it works fine.

As a side note, the `if-else` for `sample_by` will silently load an empty dataset if someone makes a typo in the argument, which is not ideal.

### Steps to reproduce the bug

1. Prepare data as a bunch of files in a directory.
2. Load that data via `load_dataset(“text”, data_files=<data_dir>/<files_glob>, …, sample_by=“document”)`.
3. Inspect the resultant dataset — every item should have the form of `{“text”: <a line from a file>}`.

### Expected behavior

`load_dataset(“text”, data_files=<data_dir>/<files_glob>, …, sample_by=“document”)` should result in a dataset with items of the form `{“text”: <one document>}`.

### Environment info

- `datasets` version: 2.18.0
- Platform: Linux-5.15.0-1046-nvidia-x86_64-with-glibc2.35
- Python version: 3.11.8
- `huggingface_hub` version: 0.21.4
- PyArrow version: 15.0.2
- Pandas version: 2.2.1
- `fsspec` version: 2024.2.0

Comments:
Thanks for reporting! We are working on a fix.
Test disabling transformers containers in docs CI
Opened by Wauplin (open)

Related to https://github.com/huggingface/doc-builder/pull/487 and [internal slack thread](https://huggingface.slack.com/archives/C04F8N7FQNL/p1711384899462349?thread_ts=1711041424.720769&cid=C04F8N7FQNL). There is now a `custom_container` option when building docs in CI. When set to `""` (instead of `"huggingface/transformers-doc-builder"` by default), we don't run the CI inside a container, therefore saving ~2min of download time. The plan is to test disabling the transformers container on a few "big" repo and if everything works correctly, we will stop making it the default container. More details on https://github.com/huggingface/doc-builder/pull/487.

cc @mishig25 

Comments:
The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_6757). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update.

On slack it was mentioned that it was actually slower for `datasets`, should we close this one or am I missing something ?

@lhoestq I converted to draft. Want to make some more tests and will let you know
Support SQLite files?
Opened by severo (closed)

### Feature request

Support loading a dataset from a SQLite file

https://huggingface.co/datasets/severo/test_iris_sqlite/tree/main

### Motivation

SQLite is a popular file format.

### Your contribution

See discussion on slack: https://huggingface.slack.com/archives/C04L6P8KNQ5/p1702481859117909 (internal)

In particular: a SQLite file can contain multiple tables, which might be matched to multiple configs. Maybe the detail of splits and configs should be defined in the README YAML, or use the same format as for ZIP files: `Iris.sqlite::Iris`. 

See dataset here: https://huggingface.co/datasets/severo/test_iris_sqlite

Note: should we also support DuckDB files?

Comments:
You can use `Dataset.from_sql(path_to_sql_file)` already. Though we haven't added the Sql dataset builder to the `_PACKAGED_DATASETS_MODULES` list or in `_EXTENSION_TO_MODULE` to map `.sqlite` to the Sql dataset builder

This would allow to load a dataset repository with a `.sqlite` file using `load_dataset` and enable the Dataset Viewer

Considering `Dataset.from_sql`'s (extremely) low usage, I don't think many users are interested in using this format for their datasets. Also, SQLite files are hard/impossible to stream efficiently and require custom logic to define splits/subsets, so IMO we shouldn't encourage people to use SQLite on the Hub.

@severo Do you have some real-world examples of datasets published in this format?

No. Indeed, it seems better to explicitly not support sqlite
Small typo on the documentation
Opened by fostiropoulos (closed)

### Describe the bug

There is a small typo on https://github.com/huggingface/datasets/blob/d5468836fe94e8be1ae093397dd43d4a2503b926/src/datasets/dataset_dict.py#L938

It should be `caching is enabled`. 

### Steps to reproduce the bug

Please visit 

https://github.com/huggingface/datasets/blob/d5468836fe94e8be1ae093397dd43d4a2503b926/src/datasets/dataset_dict.py#L938


### Expected behavior

`caching is enabled`

### Environment info

- `datasets` version: 2.17.1
- Platform: Linux-5.15.0-101-generic-x86_64-with-glibc2.35
- Python version: 3.11.7
- `huggingface_hub` version: 0.20.3
- PyArrow version: 15.0.0
- Pandas version: 2.2.1
- `fsspec` version: 2023.10.0

Comments:
Thanks for reporting @fostiropoulos! I've edited your comment to fix the link to the problematic line.


@mariosasko can i take this up?

#self-assign
Precision being changed from float16 to float32 unexpectedly
Opened by gcervantes8 (open)

### Describe the bug

I'm loading a HuggingFace Dataset for images. 

I'm running a preprocessing (map operation) step that runs a few operations, one of them being conversion to float16.  The Dataset features also say that the 'img' is of type float16.  Whenever I take an image from that HuggingFace Dataset instance, the type turns out to be float32.  



### Steps to reproduce the bug

```python
import torchvision.transforms.v2 as transforms
from datasets import load_dataset

dataset = load_dataset('cifar10', split='test')
dataset = dataset.with_format("torch")

data_transform = transforms.Compose([transforms.Resize((32, 32)), 
                                     transforms.ToDtype(torch.float16, scale=True),
                                     transforms.Normalize([0.5, 0.5, 0.5], [0.5, 0.5, 0.5]),
                                     ])
def _preprocess(examples):
    # Permutes from (BS x H x W x C) to (BS x C x H x W)
    images = torch.permute(examples['img'], (0, 3, 2, 1))
    examples['img'] = data_transform(images)
    return examples

dataset = dataset.map(_preprocess, batched=True, batch_size=8)
```

Now at this point the dataset.features are showing float16 which is great because that's what I want. 

```python
print(data_loader.features['img'])

Sequence(feature=Sequence(feature=Sequence(feature=Value(dtype='float16', id=None), length=-1, id=None), length=-1, id=None), length=-1, id=None)
```

But when I try to sample an image from this dataloader; I'm getting a float32 image, when I'm expecting float16:
```python
print(next(iter(data_loader))['img'].dtype)

torch.float32
```

### Expected behavior

I'm expecting the images loaded after the transformation to stay in float16.

### Environment info

- `datasets` version: 2.18.0
- Platform: Linux-5.15.146.1-microsoft-standard-WSL2-x86_64-with-glibc2.31
- Python version: 3.10.9
- `huggingface_hub` version: 0.21.4
- PyArrow version: 14.0.2
- Pandas version: 2.0.3
- `fsspec` version: 2023.10.0

Comments:
This is because of the formatter (`torch` in this case).
It defaults to `float32`.

You can load it in `float16` using `dataset.set_format("torch", dtype=torch.float16)`.

I am having a similar issue when _building_ a dataset given `float16`-valued data.

```py
from datasets import Features, Value, Dataset

d = Dataset.from_dict({"data": np.ones(4, dtype="float16")}, features=Features({"data": Value("float16")}))
type(d["data"][0])  # returns <class 'float'>
```

Note that I specifically indicate that my data is `float16`-valued in the `features` argument above
Use 'with' operator for some download functions
Opened by Moisan (closed)

Some functions in `streaming_download_manager.py` are not closing the file they open which lead to `Unclosed file` warnings in our code. This fixes a few of them.

Comments:
The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_6751). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update.

I was mistaken on the intent of those functions, closing the PR.
Strange slicing behavior
Opened by Luciennnnnnn (open)

### Describe the bug

I have loaded a dataset, and then slice first 300 samples using `:` ops, however, the resulting dataset is not expected, as the output below:

```bash
len(dataset)=1050324
len(dataset[:300])=2
len(dataset[0:300])=2
len(dataset.select(range(300)))=300
```

### Steps to reproduce the bug

load a dataset then:
```bash
    dataset = load_from_disk(args.train_data_dir)

    print(f"{len(dataset)=}", flush=True)
    print(f"{len(dataset[:300])=}", flush=True)
    print(f"{len(dataset[0:300])=}", flush=True)
    print(f"{len(dataset.select(range(300)))=}", flush=True)
```

### Expected behavior

```bash
len(dataset)=1050324
len(dataset[:300])=300
len(dataset[0:300])=300
len(dataset.select(range(300)))=300
```

### Environment info

- `datasets` version: 2.16.1
- Platform: Linux-5.15.0-60-generic-x86_64-with-glibc2.35
- Python version: 3.10.11
- `huggingface_hub` version: 0.20.2
- PyArrow version: 10.0.1
- Pandas version: 1.5.3
- `fsspec` version: 2023.10.0

Comments:
As explained in the [docs](https://huggingface.co/docs/datasets/v2.18.0/en/access#slicing), slicing a `Dataset` returns a dictionary that maps its column names to their values. So, `len(dataset[:300])=2` is expected, assuming your dataset has 2 columns (the returned dict has 2 keys, but each value in the dict has 300 items).
`
Scraping the whole of github including private repos is bad; kindly stop
Opened by ghost (closed)

### Feature request

https://github.com/bigcode-project/opt-out-v2 - opt out is not consent. kindly quit this ridiculous nonsense.

### Motivation

[EDITED: insults not tolerated]

### Your contribution

[EDITED: insults not tolerated]

Comments:
It's not twitter here
Option to disable file locking
Opened by VRehnberg (open)

### Feature request

Commands such as `load_dataset` creates file locks with `filelock.FileLock`. It would be good if there was a way to disable this.

### Motivation

File locking doesn't work on all file-systems (in my case NFS mounted Weka). If the `cache_dir` only had small files then it would be possible to point to local disk and the problem would be solved. However, as cache_dir is both where the small info files are written and the processed datasets are put this isn't a feasible solution.

Considering https://github.com/huggingface/datasets/issues/6395 I still do think this is something that belongs in HuggingFace. The possibility to control packages separately is valuable. It might be that a user has their dataset on a file-system that doesn't support file-locking while they are using file locking on local disk to control some other type of access.

### Your contribution

My suggested solution:
```
diff --git a/src/datasets/utils/_filelock.py b/src/datasets/utils/_filelock.py
index 19620e6e..58f41a02 100644
--- a/src/datasets/utils/_filelock.py
+++ b/src/datasets/utils/_filelock.py
@@ -18,11 +18,15 @@
 import os
 
 from filelock import FileLock as FileLock_
-from filelock import UnixFileLock
+from filelock import SoftFileLock, UnixFileLock
 from filelock import __version__ as _filelock_version
 from packaging import version
 
 
+if os.getenv('HF_USE_SOFTFILELOCK', 'false').lower() in ('true', '1'):
+    FileLock_ = SoftFileLock
+
+
 class FileLock(FileLock_):
     """
     A `filelock.FileLock` initializer that handles long paths.
```



Comments: