# -*- coding: utf-8 -*- """data_processing.ipynb Automatically generated by Colab. Original file is located at https://colab.research.google.com/drive/1Oz1QL0mD9g3lVBgtmqHa-QiwwIJ2JaX5 """ import pandas as pd import numpy as np import os from zipfile import ZipFile import re import json import io from PIL import Image, ImageFile ImageFile.LOAD_TRUNCATED_IMAGES = True from google.colab import drive drive.mount('/content/drive') path = "/content/drive/MyDrive/Duke/aphantasia_drawing_project/" data_path = os.path.join(path,"data",'drawing_experiment') df = pd.read_excel(data_path+"/questionnaire-data.xlsx", header=2) df["vviq_score"] = np.sum(df.filter(like = "vviq"), axis = 1) df["osiq_score"] = np.sum(df.filter(like = "osiq"), axis = 1) df["treatment"] = np.where(df.vviq_score > 40, "control", "aphantasia") df = df.rename(columns={ "Sub ID": "sub_id", df.columns[5]: "art_ability", df.columns[6]: "art_experience", df.columns[9]: "difficult", df.columns[10]: "diff_explanation" }) df.columns = df.columns.str.lower() df = df.drop(df.filter(like="unnamed").columns, axis = 1) df = df.drop(df.filter(regex="(vviq|osiq)\d+").columns, axis = 1) df[df.columns[df.dtypes == "object"]] = df[df.columns[df.dtypes == "object"]].astype("string") df = df.replace([np.nan,pd.NA, "nan","na","NA","n/a","N/A","N/a"], None) df.set_index('sub_id', inplace=True) actual_image_path = os.path.join(data_path,"Stimuli","Images") actual_images = {} for image_file in os.listdir(actual_image_path): img_path = os.path.join(actual_image_path, image_file) actual_images[image_file.removesuffix(".jpg")] = Image.open(img_path) key_map = { 'high_sun_ajwbpqrwvknlvpeh': 'kitchen', 'low_sun_acqsqjhtcbxeomux': 'bedroom', "low_sun_byqgoskwpvsbllvy":"livingroom" } for old_key, new_key in key_map.items(): actual_images[new_key] = actual_images.pop(old_key) aphantasia_drawings_path = os.path.join(data_path,"Drawings","Aphantasia") control_drawings_path = os.path.join(data_path,"Drawings","Control") directories = { "Aphantasia": aphantasia_drawings_path, "Control": control_drawings_path } aphantasia_subs = {i: "Aphantasia" for i in os.listdir(directories["Aphantasia"]) if "sub" in i} control_subs = {i: "Control" for i in os.listdir(directories["Control"]) if "sub" in i} sub_treatment_key = {**aphantasia_subs, **control_subs} def get_sub_files(sub): treatment_group = sub_treatment_key[sub] directory = directories[treatment_group] pattern = re.compile("^.*" + sub + "-[a-z]{3}\d-(kitchen|livingroom|bedroom).*") sub_files = os.listdir(os.path.join(directory, sub)) files_needed = {'mem1',"mem2",'mem3','pic1','pic2','pic3'} sub_key = {} for f in sub_files: if pattern.match(f): main_path = os.path.join(directory, sub, f) draw_type = f.split("-")[1] label = f.split("-")[2].removesuffix(".jpg") alt_path = os.path.join(directory, sub, "-".join([sub, draw_type]) + ".jpg") try: img = Image.open(main_path) except: img = Image.open(alt_path) sub_key[draw_type] = { "label": label, "drawing": img } unknown_drawings = files_needed - sub_key.keys() if unknown_drawings: for unk in unknown_drawings: path = os.path.join(directory, sub, "-".join([sub, unk]) + ".jpg") try: img = Image.open(path) except: img = "No Image" sub_key[unk] = { "label": "unknown", "drawing": img } return sub_key subject_data = {} for sub in iter(sub_treatment_key): subject_data[sub] = get_sub_files(sub) def is_image_blank(image): if image.mode != 'RGB': image = image.convert('RGB') pixels = list(image.getdata()) return all(pixel == (255, 255, 255) for pixel in pixels) for sub in iter(subject_data): dat = subject_data[sub] for key in dat.keys(): if is_image_blank(dat[key]["drawing"]): dat[key]["label"] = "blank" subs_missing_labels = {} for sub in iter(subject_data): dat = subject_data[sub] for key in dat.keys(): if "unknown" in dat[key]["label"]: if sub not in subs_missing_labels: subs_missing_labels[sub] = [] subs_missing_labels[sub].append(key) subs_missing_labels subject_data["sub8"]["pic3"]["label"] = "livingroom" subject_data["sub6"]["pic3"]["label"] = "bedroom" subject_data["sub6"]["pic1"]["label"] = "kitchen" def clean_sub_dat(sub): id = int(sub[3:]) treatment_group = sub_treatment_key[sub] if id in df.index: demographics_dict = df.loc[id].to_dict() else: demographics_dict = {} demographics_dict.pop("treatment",None) drawings = { "bedroom": {}, "kitchen": {}, "livingroom": {} } for draw_type, draw_data in subject_data[sub].items(): t = "memory" if draw_type[:-1] == "mem" else "perception" for d in drawings.keys(): if draw_data["label"] == d: drawings[d][t] = draw_data["drawing"] return { "subject_id": id, "treatment": treatment_group, "demographics": demographics_dict, "drawings": drawings, "image": actual_images } full_data = [] for s in subject_data.keys(): full_data.append(clean_sub_dat(s)) """160,161,162 removed, they dont have images""" full_df = pd.json_normalize(full_data) def image_to_byt(img, size=(224, 224)): if pd.isna(img): return None img_resized = img.resize(size) img_byte_arr = io.BytesIO() img_resized.save(img_byte_arr, format='PNG') return img_byte_arr.getvalue() drawing_columns = [col for col in full_df.columns if "drawings" in col or "image" in col] for col in drawing_columns: full_df[col] = full_df[col].apply(image_to_byt) def safe_convert_to_int(value): try: return int(value) except (ValueError, TypeError): return -99 col_to_process = [ "demographics.age", "demographics.art_ability", "demographics.vviq_score", "demographics.osiq_score" ] for col in col_to_process: full_df[col] = full_df[col].apply(safe_convert_to_int) full_data_path = os.path.join(path, "data","aphantasia_data.parquet") full_df.to_parquet(full_data_path, index=False)