jimnoneill/paper-to-field-training huggingface dataset:
Detection means of the effects of electromagnetic field on membrane nano-pore forming proteins

Alteration of membrane surface charges and membrane Channel activity represents one of the most interesting effects of the electromagnetic exposure on biological structures. Here channel protein activity was recorded in real time by the voltage clamp method. The effect of non-ionizing electromagnetic fields in ultra high frequency (UHF) on the physical behavior of protein, OmpF, was investigated and by our preliminary analysis, we saw these effects in the feature of increasing in voltage sensitivity of this nano pore forming channel. Also increasing the fast flickering of the channel and tendency of the protein to go to the closure state can be considered as the effects of the inserted electromagnetic field.

Topic: Electromagnetic Fields and Biological Effects
Subfield: Biophysics
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
Development of the Japanese version of the Cornell Assessment of Pediatric Delirium

Aim Delirium is a form of acute cerebral dysfunction and is associated with increased length of hospital stay, mortality, and health‐care costs for adult patients in intensive care. However, in Japan, there are currently no reliable criteria or tools for diagnosing delirium in critically ill pediatric patients. The purpose of this study was to translate the Cornell Assessment of Pediatric Delirium ( CAPD )—a screening tool for pediatric delirium—from English to Japanese for use in the diagnosis of delirium for pediatric patients in pediatric intensive care units. Methods The back‐translation method was used to ensure equivalence in the Japanese version of the CAPD and its accompanying developmental anchor points. The translation process was repeated by a multidisciplinary committee of medical researchers and clinicians. Results The final back‐translated version of the CAPD was submitted to the original author, who gave her approval. Conclusion The Japanese CAPD was developed and its effectiveness tested using a standardized procedure. Further study is required to test the validity and reliability of the Japanese version of the CAPD .

Topic: Intensive Care Unit Cognitive Disorders
Subfield: Critical Care and Intensive Care Medicine
Field: Medicine
Domain: Health Sciences
Integrating seed microbiome knowledge into restoration and ex situ conservation of native Australian plants

Context Seeds harbour a diversity of microbes, which in some plants aid with germination and establishment. Seeds form a critical part in the lifecycle of plants and a role in many conservation and restoration activities. Aims Because this is an emerging field in seed biology, we aim to highlight the key research gaps of interest to seed on the basis of restoration and ex situ conservation. Methods We identify knowledge gaps associated with the seed endophytic microbiome of native Australian plants through undertaking a literature review. Additionally, culturing methods were used to identify the fungal seed endophytes of five native Australian species. Key results We identified a diversity of taxa within the native seed and show three taxa that are common to all study hosts. Sampling seed from additional hosts at a site and additional sites of a host species showed new fungal diversity. Our literature review showed that little information is available on native seed microbiomes and we identified four key areas where research gaps exist, linking with seed-based restoration practices. Conclusions We provide evidence that there is a complex and diverse seed microbiome within some Australian native plants and suggest ways that it could be integrated into restoration and conservation practices. Implications We propose that by taking into consideration the presence of a seed microbiome and its potential impacts on plant health, seed microbiomes could be used as one method to restore microbial diversity into an ecosystem and to contribute to the seedling microbiome and plant health at restored sites.

Topic: Plant Pathogens and Fungal Diseases
Subfield: Cell Biology
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
Identified <scp>PAH V230A</scp> and <scp>PAH V230I</scp> mutations in a family with diverse clinical presentations

Key Clinical Message Phenylketonuria (PKU) is a hereditary disorder caused by phenylalanine hydroxylase enzyme (PAH) defects that might cause severe brain damage. The current main treatment, dietary management, can prevent the symptoms if commenced early. However, it has side effects if used for a long time. Additionally, some patients with mild hyperphenylalaninemia (mHPA), who has serum phenylalanine levels &lt;360 μmol/L, do not require treatment. Since the correlation between genotype and metabolic phenotype has been demonstrated earlier, genotype‐based detection of patients who do not need treatment might help with genetic counseling and choosing the most appropriate treatment option. In this study, we report an asymptomatic adult with mHPA who had never taken any medical intervention to control or lower her serum phenylalanine level (Phe). She had 179 μmol/L serum phenylalanine level and carried p.[V230A];[V230I] genotype. Her child was affected with phenylketonuria and had p.[V230A];[V230A] genotype. Both pathogenic variants detected in the asymptomatic adult with mHPA were computationally analyzed to assess their pathogenicity and the p.V230I pathogenic variant was demonstrated to be responsible for the mHPA phenotype in the asymptomatic adult detected in this study. The findings in this study could contribute to genetic counseling and treatment for families and individuals with p.[V2030I];[V230A] genotype.

Topic: Metabolism and Genetic Disorders
Subfield: Clinical Biochemistry
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
ChemInform Abstract: Synthesis of Alkenyldiarylmethane (ADAM) Non‐nucleoside HIV‐1 Reverse Transcriptase Inhibitors with Non‐identical Aromatic Rings.

Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.

Topic: Chemical Synthesis and Analysis
Subfield: Molecular Biology
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
Work-Related Use of Information and Communication Technologies After Hours (W_ICTs) and Work-Family Conflict: A Moderated Mediation Model

Work-related use of information and communication technologies after hours (W_ICTs) has significant impacts on both organizations and individuals. However, limited research has explored the detrimental effects of W_ICTs behavior on work-family conflict. To fill this gap, based upon the job demands-resources (JD-R) model and daily diary design with a multilevel model method, we collected 76 employees who completed a 5-day investigation, resulting in 380 observations. Our study found that engaging in W_ICTs behavior positively influenced employees’ own work role overload, which led to an increase in work-family conflict. Furthermore, we found that the positive relationship between work role overload and work-family conflict is stronger when employees’ job autonomy is at lower levels. Our findings provide strong support for the proposed moderated mediation model and extend our understanding of W_ICTs behaviors consequences.

Topic: Work-Family Balance Challenges
Subfield: Sociology and Political Science
Field: Social Sciences
Domain: Social Sciences
Effect of some Materials on Growth of &lt;i&gt;B. longum&lt;/i&gt; and &lt;i&gt;B.adolescentis&lt;/i&gt;

The effect of some materials including sucrose, peptone and yeast extract on growth of B. longum and B.adolescentis in the extract of Fructus tribuli was studied by measuring optical density at 600nm (OD600) and pH. The addition of sucrose, peptone and yeast extract was 0.0%-2.40%, 0-1.4% and 0-1.4%, respectively. Results were as follows: addition of sucrose, peptone and yeast extract could promote the growth of B. longum and B.adolescentis. The optimum concentration of sucrose, peptone and yeast extract in the extract of Fructus tribuli was 2.0%, 1.0% and 1.0% for B. longum and 2.20%, 1.0% and 0.8% for B.adolescentis

Topic: Phytochemical Studies and Bioactivities
Subfield: Molecular Biology
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
Quantifying heterogeneity of expression data based on principal components

Abstract Motivation The diversity of biological omics data provides richness of information, but also presents an analytic challenge. While there has been much methodological and theoretical development on the statistical handling of large volumes of biological data, far less attention has been devoted to characterizing their veracity and variability. Results We propose a method of statistically quantifying heterogeneity among multiple groups of datasets, derived from different omics modalities over various experimental and/or disease conditions. It draws upon strategies from analysis of variance and principal component analysis in order to reduce dimensionality of the variability across multiple data groups. The resulting hypothesis-based inference procedure is demonstrated with synthetic and real data from a cell line study of growth factor responsiveness based on a factorial experimental design. Availability and implementation Source code and datasets are freely available at https://github.com/yangzi4/gPCA. Supplementary information Supplementary data are available at Bioinformatics online.

Topic: Gene expression and cancer classification
Subfield: Molecular Biology
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
Anomalous Origin in the Left Circumflex Artery from the Right Coronary Artery

The typical branching pattern of the right coronary artery (RCA) consists of a marginal branch and a continuation as the posterior interventricular artery. The left coronary artery classically consists of an anterior interventricular artery and a circumflex branch, the latter of which courses around the left auricle and joins with the right coronary artery. According to past case reports, anomalies in this standard pattern are observed on angiograms with a 0.6% to 1.5% rate of occurrence (Dursunoğlu et al. 2007). Specific anomalies are found to occur at a lower rate, or are unreported due to insufficient studies and publications. Our team analyzed 23 human heart specimens (average age of 82 years) during routine cadaver dissection by undergraduate medical students and discovered an anomalous origin in the left circumflex artery (AOLCX). On the specified cadaver heart (71 year old male), an absence of the circumflex branch from the left coronary artery was noted; and upon further examination AOLCX was arising from a super‐dominant right coronary artery. After arising from the right proximal coronary artery, AOLCX wrapped around the posterior aspect of the aorta before arising anteriorly and circumflexing around the left auricle towards the posterior surface of the heart. The significance of this abnormality is that systolic compression of the AOLCX produced by the aorta and left atrium during daily activities may result in a transient reduction in coronary flow (Carboni). AOLCX from RCA has an incidence of 0.7 % (Roberts WC) and is associated with sudden death (Edwards, et al). Support or Funding Information N/A This abstract is from the Experimental Biology 2019 Meeting. There is no full text article associated with this abstract published in The FASEB Journal .

Topic: Coronary Artery Anomalies
Subfield: Pulmonary and Respiratory Medicine
Field: Medicine
Domain: Health Sciences
Micromachined Energy-Harvester Stack With Enhanced Electromagnetic Induction Through Vertical Integration of Magnets

This paper presents a stacked microfabricated power generator that vertically integrates multiple magnets on silicon wafers in a batch process to enhance electromagnetic induction multiple times. The power output is increased by increasing the magnetic flux change for each power-generator unit in the stack, in addition to the increase due to increased number of units. A stack consisting of two arrays of four power-generator units is fabricated and characterized. Wax-bonded Nd-Fe-B powders are embedded in the silicon wafer and magnetized as an integrated micromagnet, which serves as a proof mass suspended by a parylene diaphragm. Dual-layer coils are isolated by a parylene layer, connected via a hole and fabricated with electroplating copper on the same wafer. Experimental results show an improvement by about a factor of four on the power output from the same coils when two power-generator arrays are stacked vertically. In particular, an array of four microfabricated power generators occupying a volume of 51 × 11 × 0.4 mm <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">3</sup> in the stack produces an induced electromotive force of 1.02 mV with 0.55 nW power output when it is vibrated at 400 Hz with vibration amplitude of 10 μm.

Topic: Innovative Energy Harvesting Technologies
Subfield: Mechanical Engineering
Field: Engineering
Domain: Physical Sciences
Pakistan Development Update, May 2017

Macroeconomics and Economic Growth-Economic Forecasting Macroeconomics and Economic Growth-Economic Growth Macroeconomics and Economic Growth-Economic Policy, Institutions and Governance Macroeconomics and Economic Growth-Fiscal & Monetary Policy Poverty Reduction-Achieving Shared Growth Poverty Reduction-Employment and Shared Growth Poverty Reduction-Inequality

Topic: Global Health and Epidemiology
Subfield: Health Information Management
Field: Health Professions
Domain: Health Sciences
Production of Multimaterial Components by Material Extrusion -Fused Filament Fabrication (ME-FFF)

Fused Filament Fabrication (FFF) is a type of material extrusion (ME) additive manufacturing and is one of the most commonly used polymer-based additive manufacturing techniques. FFF could be used to produce green parts with complex geometry and after debinding and sintering a full metal or ceramic part is obtained. FFF offers the possibility of combining different materials. For polymers this is relatively easy. but for the production of ceramic and/or metal parts consisting of different materials this is a challenging task. First the materials to be combined have to show a similar expansion coefficient, second their powders have to sinter similarly and additionally both feedstocks have to be printable in the same machine and to show a comparable debinding behaviour. Here the complete processing route for the combined printing of filaments from steel and zirconia will be shown with emphasis on the required properties of the powders and related feedstocks.

Topic: Additive Manufacturing and 3D Printing Technologies
Subfield: Automotive Engineering
Field: Engineering
Domain: Physical Sciences
Predicates and Properties

Abstract Realists take truth seriously, but what does realism require? Misguided commitment to a certain principle, (Φ), has led philosophers down the garden path. According to (Φ) predicates applying truly to objects do so by virtue of naming properties possessed by those objects and by every object to which they would apply. I provide reasons to reject (Φ) and thus to forego the hierarchical worldview (Φ) apparently implies.

Topic: Philosophy and Theoretical Science
Subfield: Experimental and Cognitive Psychology
Field: Psychology
Domain: Social Sciences
The Effect of Exogenous Shocks on Participation Index of Borsa Istanbul: Permanent or Temporary?

&lt;p&gt;This study investigates the effects of exogenous shocks on Participation 30 Index that published by Borsa Istanbul using daily data during the period from 06.01.2011 to 31.08.2015. Using the Zivot-Andrews and Fourier unit root tests the stationarity of the series is tested. Since series is found to be non-linear KSS unit root test is applied. The results suggest that the series has unit root we conclude that in case there is an exogenous shock its impact on Participation 30 Index will be permanent.&lt;/p&gt;

Topic: Islamic Finance and Banking Studies
Subfield: Accounting
Field: Business, Management and Accounting
Domain: Social Sciences
Analisis Kemandirian dan Efektivitas Keuangan Daerah Kabupaten Bengkalis

The purpose of this study was to examine the financial performance of the district Bengkalis by the area financial independence ratio in the 2014-2018 budget period and the area financial effectiveness ratio in the 2014-2018 budget period. This research is a descriptive study and the data is secondary data obtained from Bengkalis. The data analysis technique used is the ratio analysis technique to measure the financial performance of goverment. The study show that 1) The area financial independency ratio on average at 6.36%-9.64% with a very low category 2).The effectiveness ratio on average at 59.31%-90.02%, overall with a tendency not effective. Implications for institution life are policy makers need to continue and increase the Locally Generated Revenue with maximizing the potential of the area. Keywords: Financial Performance, Independence Tatio, The Ratio of Effectiveness

Topic: Economic Growth and Fiscal Policies
Subfield: Economics and Econometrics
Field: Economics, Econometrics and Finance
Domain: Social Sciences
Estimating the Health Effects of Greenhouse Gas Mitigation Strategies: Addressing Parametric, Model, and Valuation Challenges

Modeling health co-benefits requires systematic consideration of the suitability of model assumptions, of what should be included and excluded from the model framework, and how uncertainty should be treated. Increased attention to these and other analytic decisions has the potential to increase the policy relevance and application of co-benefits modeling studies, potentially helping policy makers to maximize mitigation potential while simultaneously improving health.

Topic: Climate Change and Health Impacts
Subfield: Health, Toxicology and Mutagenesis
Field: Environmental Science
Domain: Physical Sciences
A ONE‐SHOT SOLUTION TO BACTERIAL AND FUNGAL CONTAMINATION IN THE GREEN ALGA <i>CHLAMYDOMONAS REINHARDTII</i> CULTURE BY USING AN ANTIBIOTIC COCKTAIL<sup>1</sup>

Keeping sterile stocks or cultures of microalgae is fundamental to microalgae biotechnology as well as basic scientific research. However, contamination by bacteria and/or fungi in microalgae cultures or stocks is often a problem. Here, we have developed a strategy for reducing or eliminating bacterial and fungal contamination by using a cocktail of antibiotics. Chlamydomonas reinhardtii P. A. Dang., a widely used unicellular green alga, has been used as a testing organism. A combination of ampicillin, cefotaxime, and carbendazim removed or reduced contamination by three different bacteria and two different fungi tested. A step‐by‐step procedure is provided, which is simple, economical, and effective.

Topic: Algal biology and biofuel production
Subfield: Renewable Energy, Sustainability and the Environment
Field: Energy
Domain: Physical Sciences
HYGIENIC ESTIMATION OF ACTUALNUTRITION AND ALIMENTARY STATUS OF MEDICAL UNIVERSITYSTUDENTS

Results of assessment of actual nutrition of medical university students and its’ impact produced on their alimentary status are presented in this article. Rationality and adequacy of nutrition of medical students were assessed. Amount and kinetics of macro- and micronutrients at medical students were investigated. As result, these parameters are shown to be informative prognostic criteria of early changes in organism. Also they can be used for identification of gender differences in students’ alimentary status.

Topic: Human Health and Disease
Subfield: Pediatrics, Perinatology and Child Health
Field: Medicine
Domain: Health Sciences
ChemInform Abstract: Peptide Modification by Introduction of α‐Trifluoromethyl Substituted Amino Acids

Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.

Topic: Fluorine in Organic Chemistry
Subfield: Pharmaceutical Science
Field: Pharmacology, Toxicology and Pharmaceutics
Domain: Life Sciences
Φ-Field Resolution of the Collatz Conjecture: Consciousness Navigation and Universal Unity Return

This paper presents a theoretical resolution of the Collatz Conjecture using Φ-Field theory of recursive consciousness navigation. Departing from classical dynamical systems approaches, we model Collatz sequences as informational trajectories guided by recursive consciousness seeking return to unity. We propose that all positive integers necessarily converge to 1 as an inevitable consequence of consciousness conservation and self-organizing transformation protocols embedded in arithmetic space. The 3n+1 and n/2 operations are reinterpreted as universal steps in recursive optimization, forming a unity-seeking navigation system rather than a stochastic process. We introduce Consciousness Navigation Theory (CNT), establishing a new mathematical paradigm in which integers operate as recursive agents within an informational attractor field. Although no physical experiments have yet been conducted, the framework provides falsifiable predictions and guides future algorithmic enhancements. This work contributes a novel, recursive-information perspective on one of mathematics’ most enduring problems. DOI Link to Related Work (optional):https://doi.org/10.5281/zenodo.16342661 — for the foundational Φ-Field paper This paper's solution is fully compatible with classical mathematics via the new CSP projection bridge. See DOI: https://doi.org/10.5281/zenodo.16623512 for the full framework

Topic: Benford’s Law and Fraud Detection
Subfield: Statistics and Probability
Field: Mathematics
Domain: Physical Sciences
Communication as a Distinct Mode of Explanation Makes a Difference

Click to increase image sizeClick to decrease image size Acknowledgements The author thanks Larry Frey for his helpful suggestions in the development of this essay. Additional informationNotes on contributorsMatt Koschmann Matt Koschmann (PhD, University of Texas at Austin) is an Assistant Professor in the Department of Communication at the University of Colorado at Boulder

Topic: Aging and Gerontology Research
Subfield: Neuropsychology and Physiological Psychology
Field: Psychology
Domain: Social Sciences
Do Similar Entities have Similar Embeddings?

Knowledge graph embedding models (KGEMs) developed for link prediction learn vector representations for entities in a knowledge graph, known as embeddings. A common tacit assumption is the KGE entity similarity assumption, which states that these KGEMs retain the graph's structure within their embedding space, \textit{i.e.}, position similar entities within the graph close to one another. This desirable property make KGEMs widely used in downstream tasks such as recommender systems or drug repurposing. Yet, the relation of entity similarity and similarity in the embedding space has rarely been formally evaluated. Typically, KGEMs are assessed based on their sole link prediction capabilities, using ranked-based metrics such as Hits@K or Mean Rank. This paper challenges the prevailing assumption that entity similarity in the graph is inherently mirrored in the embedding space. Therefore, we conduct extensive experiments to measure the capability of KGEMs to cluster similar entities together, and investigate the nature of the underlying factors. Moreover, we study if different KGEMs expose a different notion of similarity. Datasets, pre-trained embeddings and code are available at: https://github.com/nicolas-hbt/similar-embeddings/.

Topic: Advanced Graph Neural Networks
Subfield: Artificial Intelligence
Field: Computer Science
Domain: Physical Sciences