jimnoneill/paper-to-field-training huggingface dataset:
Occurrence Download

A dataset containing 389493 species occurrences available in GBIF matching the query: { "and" : [ "TaxonKey is Hieraaetus pennatus (Gmelin, 1788)", "HasCoordinate is true", "Year is greater than or equal to 2011", "Year is less than or equal to 2024" ] } The dataset includes 389493 records from 576 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051292-240506114902167/datasets/export for details. Data from some individual datasets included in this download may be licensed under less restrictive terms.

Topic: Sensory Analysis and Statistical Methods
Subfield: Food Science
Field: Agricultural and Biological Sciences
Domain: Life Sciences
Inhibitors of Nitric Oxide Promote Microvascular Thrombosis

Nitric oxide plays a role in microvascular anastamotic thrombosis. Intravenous NO inhibitors appear to increase the short-term rate of microvascular thrombosis. L-arginine, an NO precursor, does not appear to produce the opposite effect. Further studies using local NO donors and antagonists as well as more potent NO precursors are needed to further evaluate NO's role in microvascular thrombosis. The results of this study may have applications to human microvascular surgery.

Topic: Cardiovascular Issues in Pregnancy
Subfield: Cardiology and Cardiovascular Medicine
Field: Medicine
Domain: Health Sciences
Réforme du Régime Belge de Pension Légale Basée sur la Longévité

Résumé. L’amélioration constante de l’espérance de vie attendue dans les prochaines décennies ne manquera pas d’influencer la viabilité financière de nos régimes de pensions de premier pilier financé par répartition. L’objet de cet article est de mesurer précisément à l ‘horizon 2050 ce risque de longévité sur notre système de pension et de proposer une réforme progressive du mode de calcul permettant de prendre en compte cet effet. Nous montrons que cette correction peut s’interpréter naturellement comme un passage dans la technique de pension dite des comptes notionnels. Mots-clés: Répartition, longévité, comptes notionnels 12

Topic: Motivation and Self-Concept in Sports
Subfield: Social Psychology
Field: Psychology
Domain: Social Sciences
Guidelines and Consensus: Statement on Pregnancy in Pulmonary Hypertension from the Pulmonary Vascular Research Institute

Editor: We read with interest the 2015 Statement on Pregnancy in Pulmonary Hypertension from the Pulmonary Vascular Research Institute.1 It aimed to provide evidence-based guidelines for the management of pregnancies complicated by pulmonary hypertension. Specifically, the authors staunchly recommend cesarean delivery between 34 and 36 weeks gestation as the preferred mode of delivery. The authors assert that cesarean delivery "bypasses the hemodynamic complications associated with labor… and also the auto transfusion associated with vaginal contractions." p45 We find fault with both this recommendation and its justification, and we are troubled that the authors obtained limited obstetric input (only 1 of the 9 authors was affiliated with a department of obstetrics) and did not utilize specialty and interdisciplinary working groups when drafting pregnancy-related guidelines. We assert that route and timing of delivery in the setting of pulmonary hypertension complicating pregnancy remains controversial. Although recent management trends favor planned cesarean delivery, there is little evidence that cesarean delivery improves maternal outcomes over vaginal delivery.2,3 Although cardiac output can increase by up to 25% in active labor and by 50% during maternal pushing efforts, assisted second-stage labor and laboring in the lateral decubitus position can both greatly offset these changes.4 Moreover, cardiac output in the postpartum period can increase by as much as 80% regardless of delivery route. It is also relevant to consider that induction of regional anesthesia for cesarean delivery can result in hypotension in up to 30% of cases.4 Overall, cesarean delivery results in higher rates of severe maternal morbidity and mortality, including higher rates of death, hemorrhage, shock, cardiac arrest, renal failure, venous thromboembolic event, and infection.5 Both the severity of pulmonary disease and the woman's pregnancy history must be considered in any delivery recommendation. A woman with mild, stable pulmonary hypertension is very different from one with severe right ventricular failure requiring, for example, parenteral prostanoid or nitric oxide therapy. Likewise, an urgent cesarean delivery involving a multiparous woman presenting in rapidly progressive labor can cause more harm than vaginal delivery. Successful management of the gravid woman with pulmonary hypertension requires a multidisciplinary team comprising individuals from obstetrics, anesthesiology, and neonatology departments, as well as a pulmonary hypertension specialist, working with experienced support staff. We advocate for an individualized delivery plan taking relevant maternal and pregnancy characteristics into consideration.

Topic: Cardiovascular Issues in Pregnancy
Subfield: Cardiology and Cardiovascular Medicine
Field: Medicine
Domain: Health Sciences
EPIDURAL ANALGESIA WITH AND WITHOUT FENTANYL DURING LABOR DOES NOT IMPACT ON INFANT BREAST FEEDING

S363 INTRODUCTION: Controversy exists as to whether epidural analgesia with or without fentanyl administered to the mother during labor affects neonatal neurobehavioral scores [1] and/or the infant's ability to be breast fed. [2] This study was undertaken to determine if there is an association between labor epidural analgesia with or without fentanyl and subsequent breast feeding (BF) problems. METHODS: After IRB approval and informed consent, 500 consecutive women who had delivered vaginally and were breast feeding their infants were asked on postpartum day 1 to complete a questionnaire regarding difficulties they might be having with breast feeding. They were also asked if this was their first time breast feeding or if they had breast fed previously. Their medical records were then reviewed to determine if they had an epidural anesthetic during labor and if fentanyl was used as one of the anesthetic agents. Data were analyzed using the chi square or Mantel-Haenszel test. P < 0.05 was considered significant. RESULTS: Overall, 410 (82%) women had an epidural anesthetic, of which 264 (64.4%) included epidural fentanyl. There were 268 (53.6%) women breast feeding for the first time, and 232 (46.4%) women who breast fed previously. Overall, 267 women (53.4%) reported difficulty with breast feeding. Women who breast fed previously reported breast feeding problems (prob) less frequently {104 (44.8%)} than women who were breast feeding for the first time {163 (60.8%)}, p < 0.05. In women who reported difficulty with breast feeding, we were not able to find a statistically significant difference between those who received an epidural (epid) anesthetic or epidural fentanyl (fent) and those who did not. This was true overall (all), in women breast feeding for the first time (1st) and in women who had breast fed previously (prev). (Table 1)Table 1DISCUSSION: We were not able to find an association, during the first 24 hours postpartum, in women who reported difficulty breast feeding with regard to epidural use or epidural fentanyl use. This was true, whether the mother had breast fed previously or not. We conclude that it is safe to administer epidural analgesia during labor with or without fentanyl from the perspective of the mother's ability to breast feed her infant.

Topic: Anesthesia and Neurotoxicity Research
Subfield: Developmental Neuroscience
Field: Neuroscience
Domain: Life Sciences
Influence of load on order-disorder transition in native collagen fibres

The influence of external stress on the hydrothermal and chemical (induced by water solutions of KCNS and HCl) contraction of native collagen fibres has been investigated. The experiments were made in the isometric and isotonic measurements modes. Th

Topic: Cellular Mechanics and Interactions
Subfield: Cell Biology
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
Emotions and Autonomy in Foreign Language Learning at University

This article explores the role of emotions in foreign language learning at university level. Drawing on the recent literature regarding the affective dimension in language learning, it illustrates the ways in which students experience emotions in foreign language learning. Particular emphasis is given to the way in which students’ emotions, both positive and negative, emerge and change during their learning process. The article presents a study conducted among university students learning English in a co-directed and autonomy-inspired environment. Following a qualitative approach, students’ emotional expression was investigated, by means of individual advising sessions and group sessions, as well as in written form. The relationship between emotion, motivation and self-awareness in a semi-autonomous learning context was explored in order to consider the impact of the affective dimension on students’ progress and achievement.

Topic: EFL/ESL Teaching and Learning
Subfield: Language and Linguistics
Field: Arts and Humanities
Domain: Social Sciences
X-Stance: A Multilingual Multi-Target Dataset for Stance Detection

We extract a large-scale stance detection dataset from comments written by candidates of elections in Switzerland. The dataset consists of German, French and Italian text, allowing for a cross-lingual evaluation of stance detection. It contains 67 000 comments on more than 150 political issues (targets). Unlike stance detection models that have specific target issues, we use the dataset to train a single model on all the issues. To make learning across targets possible, we prepend to each instance a natural question that represents the target (e.g. «Do you support X?»). Baseline results from multilingual BERT show that zero-shot cross-lingual and cross-target transfer of stance detection is moderately successful with this approach.

Topic: Topic Modeling
Subfield: Artificial Intelligence
Field: Computer Science
Domain: Physical Sciences
Calcification of the pituitary stalk associated with the clinical diagnosis of schizophrenia.

Three male patients who were at some time diagnosed as schizophrenic are described. They all suffered from a degree of strangulation due to calcification of the pituitary stalk and may have been suffering from a variant of mesodermal hyperplastic disease given a diagnosis of schizophrenia.

Topic: Thyroid and Parathyroid Surgery
Subfield: Surgery
Field: Medicine
Domain: Health Sciences
Verbal aspect in SLA – Much More than (just) Grammar

Both L2 students and teacher are well aware of the fact that verbal aspect is one of the most difficult issues to master in Slavic languages. The reason for this is mainly its complexity. Verbal aspect may appear to be a grammatical issue (morphological and syntactical) but it is much more than that.

To master verbal aspect in Croatian, learning verbal forms, i.e. the difference between imperfective and perfective verbs, is just the first step. Verbal aspect is just as much a semantical and pragmatical issue as it is a grammatical one. Therefore its proper use requires good general knowledge of a language and a wide knowledge of the world as it is seen through that particular language.

Using the examples from Swedish and Croatian, the author will show that linguistic markers are important but often not substantial enough for the proper use of verbal aspect in Croatian. She will present “traditional” approaches to the verbal aspect in Croatian as L2 and try to give an insight into approaches that still need to be developed which are based on the fact that verbal aspect cannot be properly learned/acquired unless it is taught on all levels. The influence of L1 on the acquisition of verbal aspect in L2 will also be discussed, i.e. potential markers in L1 that may influence appropriate or inappropriate use of aspect in L2

Topic: Linguistics, Language Diversity, and Identity
Subfield: Language and Linguistics
Field: Arts and Humanities
Domain: Social Sciences
Crystallographic Distinction between “Contact” and\n“Separated” Ion Pairs:  Structural Effects on Electronic/ESR\nSpectra of Alkali-Metal Nitrobenzenides

The classic nitrobenzene anion-radical (&lt;b&gt;NB&lt;/b&gt;&lt;b&gt;&lt;sup&gt;-&lt;/sup&gt;&lt;/b&gt;&lt;sup&gt;•&lt;/sup&gt; or nitrobenzenide) is isolated for the first time as\npure crystalline alkali-metal salts. The deliberate use of the supporting ligands 18-crown-6 and [2.2.2]cryptand allows the selective formation of contact ion pairs designated as (crown)M&lt;sup&gt;+&lt;/sup&gt;&lt;b&gt;NB&lt;/b&gt;&lt;b&gt;&lt;sup&gt;-&lt;/sup&gt;&lt;/b&gt;&lt;sup&gt;•&lt;/sup&gt;, where M&lt;sup&gt;+&lt;/sup&gt; =\nK&lt;sup&gt;+&lt;/sup&gt;, Rb&lt;sup&gt;+&lt;/sup&gt;, and Cs&lt;sup&gt;+&lt;/sup&gt;, as well as the separated ion pair K(cryptand)&lt;sup&gt;+&lt;/sup&gt;&lt;b&gt;NB&lt;/b&gt;&lt;b&gt;&lt;sup&gt;-&lt;/sup&gt;&lt;/b&gt;&lt;sup&gt;•&lt;/sup&gt;both series of which are structurally\ncharacterized by precise low-temperature X-ray crystallography, ESR analysis, and UV−vis spectroscopy.\nThe unusually delocalized structure of &lt;b&gt;NB&lt;/b&gt;&lt;b&gt;&lt;sup&gt;-&lt;/sup&gt;&lt;/b&gt;&lt;sup&gt;•&lt;/sup&gt; in the separated ion pair follows from the drastically shortened\nN−C bond and marked quinonoidal distortion of the benzenoid ring to signify complete (95%) electronic\nconjugation with the nitro substituent. On the other hand, the formation of contact ion pairs results in the\nsubstantial &lt;i&gt;decrease&lt;/i&gt; of electronic conjugation in inverse order with cation size (K&lt;sup&gt;+&lt;/sup&gt; &gt; Rb&lt;sup&gt;+&lt;/sup&gt;) owing to increased\nlocalization of negative charge from partial (NO&lt;sub&gt;2&lt;/sub&gt;) bonding to the alkali-metal cation. Such a loss in electronic\nconjugation (or reverse charge transfer) may be counterintuitive, but it is in agreement with the distribution\nof odd-electron spin electron density from the ESR data and with the hypsochromic shift of the characteristic\nabsorption band in the electronic spectra. Most importantly, this crystallographic study underscores the\nimportance of ion-pair structure on the intrinsic property (and thus reactivity) of the component ionsas\nfocused here on the nitrobenzenide anion.

Topic: Genetic and Environmental Crop Studies
Subfield: Plant Science
Field: Agricultural and Biological Sciences
Domain: Life Sciences
DIPS-Plus: The Enhanced Database of Interacting Protein Structures for Interface Prediction

This dataset contains replication data for the paper titled "DIPS-Plus: The Enhanced Database of Interacting Protein Structures for Interface Prediction". The dataset consists of pickled Pandas DataFrame files that can be used to train and validate protein interface prediction models. This dataset also contains the externally generated residue-level PSAIA and HH-suite3 features for users' convenience (e.g. raw MSAs and profile HMMs for each protein complex). Our GitHub repository linked in the "Additional notes" metadata section below provides more details on how we parsed through these files to create training and validation datasets. The GitHub repository for DIPS-Plus also includes scripts that can be used to impute missing feature values and convert the final "raw" complexes into DGL-compatible graph objects.

Topic: Bioinformatics and Genomic Networks
Subfield: Molecular Biology
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
An Occult Pancreatic Carcinoma Coexistent with Hemorrhagic Pancreatic Pseudocyst

症例は79歳の男性で，約40年前に膵体尾部の囊胞性疾患に対して開腹術の既往があるが詳細不詳である．上部消化管内視鏡検査で胃体後壁からの出血を認め，囊胞内出血からの穿破が疑われた．緊急血管造影で脾動脈から膵囊胞内出血，胃穿破を認め，脾動脈本幹を塞栓し止血をえた．全身状態の改善を待って待機的に手術施行した．膵囊胞病変周囲は炎症性変化で強固な癒着を来していたため，胃上部，膵体尾部，脾臓，結腸脾彎曲部，左副腎を一塊として摘出した．病理組織学的検査では囊胞壁は肉芽組織，膿瘍で覆われ仮性囊胞であった．膵組織は萎縮しほぼ消失していたが，胃囊胞瘻孔部対側の囊胞壁外の萎縮した膵臓に腺癌を認めた．本症例は長期間経過観察されていた膵仮性囊胞に併存した膵癌と考えられ，炎症をくり返し癌化した可能性もあり貴重な症例と考え報告する．

Topic: Pancreatic and Hepatic Oncology Research
Subfield: Oncology
Field: Medicine
Domain: Health Sciences
Evaluation of Euler-like sums via Hurwitz zeta values

In this paper we collect two generalizations of harmonic numbers (namelygeneralized harmonic numbers and hyperharmonic numbers) under one roof.Recursion relations, closed-form evaluations, and generating functions of thisunified extension are obtained. In light of this notion we evaluate someparticular values of Euler sums in terms of odd zeta values. We alsoconsider the noninteger property and some arithmetical aspects of this unifiedextension.

Topic: Advanced Mathematical Identities
Subfield: Algebra and Number Theory
Field: Mathematics
Domain: Physical Sciences
SH596468.07FU

UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.

Topic: Cancer-related cognitive impairment studies
Subfield: Pulmonary and Respiratory Medicine
Field: Medicine
Domain: Health Sciences
PHF8 facilitates transcription recovery following DNA double-strand break repair

Abstract Transient halting of transcription activity on the damaged chromatin facilitates DNA double-strand break (DSB) repair. However, the molecular mechanisms that facilitate transcription recovery following DSB repair remain largely undefined. Notably, failure to restore gene expression in a timely manner can compromise transcriptome signatures and may impose deleterious impacts on cell identity and cell fate. Here, we report PHF8 as the major demethylase that reverses transcriptionally repressive epigenetic modification laid down by the DYRK1B–EHMT2 pathway. We found that PHF8 concentrates at laser-induced DNA damage tracks in a DYRK1B-dependent manner and promotes timely resolution of local H3K9me2 to facilitate the resumption of transcription. Moreover, PHF8 also assists in the recovery of ribosomal DNA (rDNA) transcription following the repair of nucleolar DSBs. Taken together, our findings uncover PHF8 as a key mediator that coordinates transcription activities during the recovery phase of DSB responses.

Topic: DNA Repair Mechanisms
Subfield: Molecular Biology
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
Protective effect of<i>Canavalia gladiata</i>(sword bean) fruit extracts and its flavanoidal contents, against azathioprine-induced toxicity in hepatocytes of albino rats

This study was aimed at evaluating the hepatoprotective activity of Canavalia gladiata seed extract in azathioprine (AZP) intoxicated rats. AZP (1 mg/ml i.p.) was administered for 22 days to induce hepatotoxicity in Wistar rats. Canavalia gladiata seed extract was prepared using methanol and water. The methanolic extract of Canavalia gladiata at a dose of 100 or 200 mg/kg was used to determine hepatoprotective activity by measuring liver tissue damage markers like serum glutamic pyruvic transaminase, glutamic oxaloacetate transaminase, alkaline phosphatase, and bilirubin levels. The levels of these markers were markedly decreased compared to the AZP group. Canavalia gladiata seed extract doses of 100 and 200 mg/kg significantly reduced AZP-induced hepatotoxicity and these results were supported by histopathological findings. Data indicate the hepatoprotective activity of natural herbal extract in hepatocytes of AZP-treated rats.

Topic: Hibiscus Plant Research Studies
Subfield: Pharmacology
Field: Pharmacology, Toxicology and Pharmaceutics
Domain: Life Sciences
Identification of genomic regions and pathways associated with traits related to rumen acidosis in feedlot Nellore cattle

Abstract There may be an increased risk of metabolic disorders, such as rumen acidosis, in cattle fed high‐concentrate diets, particularly those from Bos taurus indicus genotypes, which have shown to be more sensitive to ruminal acidification. Therefore, this study aimed to estimate (co)variance components and identify genomic regions and pathways associated with ruminal acidosis in feedlot Nellore cattle fed high‐concentrate diets. It was utilized a dataset containing a total of 642 Nellore bulls that were genotyped from seven feedlot nutrition studies. The GGP Indicus 35k panel was used with the single step genome‐wide association study methodology in which the effects of the markers were obtained from the genomic values estimated by the GBLUP model. A bivariate model to estimate genetic correlations between the economically important traits and indicator traits for acidosis was used. The traits evaluated in this study that were nutritionally related to rumen acidosis included average daily gain (ADG), final body weight, time spent eating (TSE), time spent ruminating, rumenitis score (RUM), rumen absorptive surface area (ASA), rumen keratinized layer thickness (KER) and hot carcass weight (HCW). The identified candidate genes were mainly involved in the negative or non‐regulation of the apoptotic process, salivary secretion, and transmembrane transport. The genetic correlation between HCW and ASA was low positive (0.27 ± 0.23), and between ADG and ASA was high moderate (0.58 ± 0.59). A positive genetic correlation between RUM and all performance traits was observed, and TSE correlated negatively with HCW (−0.33 ± 0.21), ASA (−0.75 ± 0.48), and KER (−0.40 ± 0.27). The genetic association between economically important traits and indicator traits for acidosis suggested that Nellore cattle may be more sensitive to acidosis in feedlot systems.

Topic: Genetic and phenotypic traits in livestock
Subfield: Genetics
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences