jimnoneill/paper-to-field-training huggingface dataset:
Control on Peppers, 1988:

Abstract Seedlings were transplanted on 19 May in 5 lines of offset double rows. Spacing within the double rows was 18 inches between rows and 2 ft between plants. Spacing between double rows was 5 ft. Treatments were assigned according to a randomized complete block design consisting of 6 blocks, with 10 plants/treatment/block. Treatments were applied weekly trom 16 Jun to 21 Jul and on 4 Aug with a hand-held CO2 sprayer at 37 psi. Approximately 250 gal/acre was applied to obtain full coverage. Lannate (methomyl) was applied to all treatments on 21 Jul to reduce aphid populations. Treatment evaluations were based on thrips counts, and the percentage of downgradable fruit due to thrips scarring. Counts were obtained by randomly selecting from the top of the plant canopy 1 fully expanded leaf/plant, for 10 plants/treatment/block. Posttreatment leaf samples were obtained weekly from 22 Jun to 17 Aug. The percentages of downgradable fruit due to scarring were determined for fruit harvested weekly from 1.3 Jul to 17 Aug. A mean of 562 (±85 S.D.) fruits/treatment were examined.

Topic: Banana Cultivation and Research
Subfield: Plant Science
Field: Agricultural and Biological Sciences
Domain: Life Sciences
Cloning and expression analysis of a transcription factor gene BoWRKY3 from Brassica oleracea var. italica

A WRKY transcription factor gene, designated BoWRKY3 (accession number: JN120758), was amplified from leaves of Brassica oleracea var. italica, and the sequence analysis was performed. The expression patterns of BoWRKY3 in leaves before and after downy mildew challenge were analyzed by reverse transcription-polymerase chain reaction (RT-PCR). Sequencing results indicated that the genomic DNA was 1 136 bp in length with 3 introns of 81, 101 and 96 bp, respectively. The complete coding sequence was 858 bp encoding 285 amino acids, including a conserved WRKYGQK domain and a CX<sub>5</sub>CX<sub>23</sub>HX<sub>1</sub>H zinc finger structure. RT-PCR analysis showed that the highest expression levels of BoWRKY3 were observed at 6-36 h induced by Hyaloperonospora parasitica, suggesting that its function was possibly related with downy mildew resistance. Sequence alignment results showed that there were very little differences between BoWRKY3 and homologous genes of Cruciferae plants, however, major differences were observed between BoWRKY3 and those of Gramineae plants, revealing their large genetic distance.

Topic: Plant Gene Expression Analysis
Subfield: Molecular Biology
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
Outcome of colectomy for Clostridium difficile colitis

Diseases of the Colon & Rectum: March 2009 - Volume 52 - Issue 3 - p 547-548 doi: 10.1097/01.dcr.0000345762.64529.a8

Topic: Clostridium difficile and Clostridium perfringens research
Subfield: Infectious Diseases
Field: Medicine
Domain: Health Sciences
Outside color: perceptual science and the puzzle of color in philosophy

Is color real or illusory, mind independent or mind dependent? Does seeing in color give us a true picture of external reality? The metaphysical debate over color has gone on at least since the seventeenth century. In this book, M. Chirimuuta draws on contemporary perceptual science to address these questions. Her account integrates historical philosophical debates, contemporary work in the philosophy of color, and recent findings in neuroscience and vision science to propose a novel theory of the relationship between color and physical reality. Chirimuuta offers an overview of philosophy's approach to the problem of color, finds the origins of much of the familiar conception of color in Aristotelian theories of perception, and describes the assumptions that have shaped contemporary philosophy of color. She then reviews recent work in perceptual science that challenges philosophers' accounts of color experience. Finally, she offers a pragmatic alternative whereby perceptual states are understood primarily as action-guiding interactions between a perceiver and the environment. The fact that perceptual states are shaped in idiosyncratic ways by the needs and interests of the perceiver does not render the states illusory. Colors are perceiver-dependent properties, and yet our awareness of them does not mislead us about the world. Colors force us to reconsider what we mean by accurately presenting external reality, and, as this book demonstrates, thinking about color has important consequences for the philosophy of perception and, more generally, for the philosophy of mind.

Topic: Color perception and design
Subfield: Social Psychology
Field: Psychology
Domain: Social Sciences
RocaSec: a standalone GUI-based package for robust co-evolutionary analysis of proteins

Abstract Summary Patterns of mutational correlations, learnt from protein sequences, have been shown to be informative of co-evolutionary sectors that are tightly linked to functional and/or structural properties of proteins. Previously, we developed a statistical inference method, robust co-evolutionary analysis (RoCA), to reliably predict co-evolutionary sectors of proteins, while controlling for statistical errors caused by limited data. RoCA was demonstrated on multiple viral proteins, with the inferred sectors showing close correspondences with experimentally-known biochemical domains. To facilitate seamless use of RoCA and promote more widespread application to protein data, here we present a standalone cross-platform package ‘RocaSec’ which features an easy-to-use GUI. The package only requires the multiple sequence alignment of a protein for inferring the co-evolutionary sectors. In addition, when information on the protein biochemical domains is provided, RocaSec returns the corresponding statistical association between the inferred sectors and biochemical domains. Availability and implementation The RocaSec software is publicly available under the MIT License at https://github.com/ahmedaq/RocaSec. Supplementary information Supplementary data are available at Bioinformatics online.

Topic: RNA and protein synthesis mechanisms
Subfield: Molecular Biology
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
Effects of sex hormones on development of physiological and pathological cardiac hypertrophy in male and female rats

Previous studies have demonstrated a role for sex hormones in maintaining normal heart weight and myosin isoenzyme balance in the rat. To determine if sex hormones were necessary to elicit cardiac adaptations to the chronic loads of swimming or hypertension, female rats were gonadectomized (X) and then exposed either to a chronic swimming program (Sw) or to renal hypertension for 8-10 wk. Because gonadectomy in females increased heart and body weight, separate groups of food-restricted sedentary and Sw gonadectomized females (XFR) were included. Swimming resulted in significant increases in both heart weight and in the percent ventricular V1 isomyosin in female controls (C), X, and XFR. Hypertension was studied in C, X, and X with estrogen replacement. Cardiac hypertrophy developed in all groups, but estrogen therapy attenuated the decline in percent V1 isomyosin in both normotensive and hypertensive X animals. Swimming, which is generally not associated with cardiac hypertrophy in males, was also studied in that sex. Gonadectomy did not alter either the heart weight or the myosin isoenzyme response to Sw, although testosterone replacement in gonadectomized males restored ventricular V1 myosin levels to or above normal. Measures of serum thyroid levels and of myocardial catecholamines failed to demonstrate a causal relationship between these hormones and the various results. Therefore, although sex hormones are important for maintaining normal heart weights and myosin isoenzyme balance in rats, they do not appear to be important in the adaptations hearts exhibit when exposed to physiological or pathological loads.

Topic: Hormonal and reproductive studies
Subfield: Endocrinology, Diabetes and Metabolism
Field: Medicine
Domain: Health Sciences
Novel surface attachment mechanism of the Streptococcus pneumoniae protein PspA

Pneumococcal surface protein A (PspA) of Streptococcus pneumoniae has been found to utilize a novel mechanism for anchoring to the bacterial cell surface. In contrast to that of surface proteins from other gram-positive bacteria, PspA anchoring required choline-mediated interactions between the membrane-associated lipoteichoic acid and the C-terminal repeat region of PspA. Release of PspA from the cell surface could be effected by deletion of 5 of the 10 C-terminal repeat units, by high concentrations of choline, or by growth in choline-deficient medium. Other pneumococcal proteins, including autolysin, which has a similar C-terminal repeat region, were not released by these treatments. The attachment mechanism utilized by PspA thus appears to be uniquely adapted to exploit the unusual structure of the pneumococcal cell surface. Further, it has provided the means for rapid and simple isolation of immunogenic PspA from S. pneumoniae.

Topic: Streptococcal Infections and Treatments
Subfield: Public Health, Environmental and Occupational Health
Field: Medicine
Domain: Health Sciences
Microstructure and Mechanical Property Analysis of the Metal Part by SLM

The objective of the research was that analyzed the microstructure and mechanical properties of metal part built by SLM in this paper. The tensile samples were made by SLM, the rupture gotten with tensile experiment was scan by SEM, and the rupture property was analyzed. The results of experiment showed: the parts formed by optimized parameters have a density above 96%, a tensile strength of 635MPa, an extension of 55.679% and an average micro hardness of HV307 for stainless steel powder. It is interesting to find that the phase of the built parts is also austenite by XRD, which is the same as that of the starting material.

Topic: Titanium Alloys Microstructure and Properties
Subfield: Materials Chemistry
Field: Materials Science
Domain: Physical Sciences
IDENTIFYING THERAPEUTIC AGENTS FOR THE TREATMENT OF DIFFUSE LARGE B-CELL LYMPHOMA

Diffuse large B-cell lymphoma (DLBCL) can be categorized into two clinically relevant subtypes: activated B-cell (ABC) DLBCL and germinal center B-cell (GCB). Patients with ABC DLBCL have a worse prognosis, and are defined by chronic, overactive signaling through the B-cell receptor and NF-κB pathways. Signaling through the B-cell receptor is heavily dependent on the Src family kinases (SFKs), and NF-κB signaling is dependent on the proteasome. In Chapters 2 and 3, we examined the effects of the SFK inhibitor dasatinib in a panel of ABC and GCB DLBCL cell lines, with a focus on changes in the kinome (Chapter 2) or the proteasome (Chapter 3). In Chapter 2, we found that the ABC DLBCL cell lines are much more sensitive to dasatinib than the GCB DLBCL cell lines. However, both subtypes display inhibition of the SFKs in response to dasatinib treatment. Subsequent analyses revealed several cell cycle kinases to be inhibited by dasatinib treatment in the ABC DLBCL subtype, but not in the GCB DLBCL subtype. In Chapter 3, we found that treatment with dasatinib results in a decrease in the proteasome’s chymotrypsin-like (ChL), trypsin-like (TL), and caspase-like (CaL) activities in the ABC but not GCB DLBCL cell lines. Furthermore, it appears that association between the proteasome 20S core particle and 19S regulatory particle is disrupted in the ABC DLBCL cell lines after dasatinib treatment. In Chapter 4, we explored the utility of site-specific inhibitors of the proteasome’s TL and CaL activities in a variety of cancer cell lines. We found that the TL/ChL and CaL/ChL ratios of proteasome activity correlate with sensitivity to TL and CaL inhibitors, respectively. In addition, the two hematological malignancy cell lines studied are most sensitive to the site-specific inhibitors. Furthermore, the combination of the TL or CaL site-specific inhibitors with bortezomib or carfilzomib is synergistic in all cell lines examined. The studies presented in this thesis have important implications for the clinical use of dasatinib and site-specific proteasome inhibitors for the treatment of DLBCL, either alone or in combination with other agents. These inhibitors show promise and warrant further exploration.

Topic: Lymphoma Diagnosis and Treatment
Subfield: Pathology and Forensic Medicine
Field: Medicine
Domain: Health Sciences
Occurrence Download

A dataset containing 49707 species occurrences available in GBIF matching the query: { "and" : [ "HasCoordinate is true", "HasGeospatialIssue is false", "OccurrenceStatus is Present", "TaxonKey is Helvella L." ] } The dataset includes 49707 records from 299 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0427283-210914110416597/datasets/export for details. Data from some individual datasets included in this download may be licensed under less restrictive terms.

Topic: Sport Psychology and Performance
Subfield: Developmental and Educational Psychology
Field: Psychology
Domain: Social Sciences
Editorial T-wave alternans: predicting the unpredictable?

This editorial refers to ‘T-wave alternans predicts mor-tality in a population undergoing a clinically indicated excercise test ’ by T. Nieminen et al., on page 2332 Sudden cardiac death (SCD) due to ventricular arrhythmias has a high morbidity and mortality. It is no wonder that car-diologists, rather than patching up survivors, are dedicated to finding predictors of cardiac electrical instability to prevent SCD. The implantable cardiac defibrillator (ICD) has evolved as the ultimate strategy for sudden arrhythmic death. In secondary prevention, individuals are recognized by an aborted arrhythmic event. By stratifying according to left ventricular ejection fraction (LVEF) below 35%, SCD may also be prevented by an ICD in individuals without any prior arrhythmic event.1 However, the relative SCD risk based on LVEF alone is lower, and additional stratifiers are

Topic: Cardiac electrophysiology and arrhythmias
Subfield: Cardiology and Cardiovascular Medicine
Field: Medicine
Domain: Health Sciences
A Case Study in the Application of Model-Based Systems Engineering to Laboratory Research Science

This dissertation presents an exploration of the application of Model-Based Systems Engineering (MBSE) tools and methods to the design and execution of sophisticated laboratory experiments. An experiment to measure the first excited state diffusion coefficient, recently attempted by the author, is used as an example. Several MBSE analysis methods are applied, retrospectively, to the process by which the experiment in question was planned and executed. The potential for increased efficiency in managing the diverse types of information associated with such laboratory experiments is demonstrated, as well as possible further avenues for future research.

Topic: Systems Engineering Methodologies and Applications
Subfield: Control and Systems Engineering
Field: Engineering
Domain: Physical Sciences
Outcomes of autotransplanted teeth with complete root formation: a systematic review and meta‐analysis

Abstract Aim In this review, we assessed clinical outcomes of autotransplanted teeth with complete root formation and the effects of various influencing factors. Materials and Methods Pubmed, Scopus, Google scholar and a hand search were used to identify prospective and retrospective cohort studies and case series till February 2013. Using multilevel Poisson regression, the annual failure rate ( FR ), 1‐year and 5‐year survival rates ( SR s), infection‐related root resorption rate ( RR ), ankylosis rate ( AR ), the influences of systemic antibiotics ( SA s), endodontic and splinting modalities and donor tooth morphology were analysed. Failure was defined as a transplant being lost during follow‐up. Results Twenty‐six studies were included. The estimated FR , RR , AR , 1‐ and 5‐year SR s were 2.0%, 2.1%, 1.2%, 98.0% and 90.5%, respectively. The estimated FR was higher in the absence of SA , suture splinting, wire splinting ≤14 days and posterior donors. The estimated RR was higher in the absence of SA , endodontic treatment within post‐operative 14 days and anterior/premolar donors. The estimated AR was higher with wire splinting and premolar donors. Conclusions Tooth autotransplantation with complete root formation is a favourable treatment with rare FR , RR and AR . However, SA s, endodontic and splinting modalities and tooth morphology seemed to influence the outcomes.

Topic: Dental Trauma and Treatments
Subfield: Emergency Medical Services
Field: Health Professions
Domain: Health Sciences
On designing a cybersecurity educational program for higher education

Cybersecurity education is critical for preparing current and future IT professionals to deal with the multitude of security threats that occur worldwide on an ever-increasing scale. We believe that this issue can be addressed most effectively at the level of higher education, which provides the best balance of existing skills and available resources as needed for such highly-technical topics.

Topic: Information and Cyber Security
Subfield: Information Systems
Field: Computer Science
Domain: Physical Sciences
The Feasibility of Burner-Can Burn-Through Thermal Detection Prior to Engine Case Rupture

Full-scale tests simulating engine combustion section thermal failures (burn-through) were conducted using J57 engine (cowled and uncowled) to determine the feasibility of detecting a burn-through prior to its occurrence by monitoring engine skin temperature. Results of the tests indicated that as few as four thermocouples, located 90 degrees apart around the diffuser case and/or burner can case, could detect a burn-through prior to engine case rupture.

Topic: Hermeneutics and Narrative Identity
Subfield: Philosophy
Field: Arts and Humanities
Domain: Social Sciences
Wheelchair Basketball Athletes’ Perceptions of the Coach–Athlete Relationship

The majority of research on the coach–athlete relationship has been explored from the perspective of able-bodied athletes. The purpose of this study was to explore wheelchair basketball athletes’ perceptions of the coach–athlete relationship. Timelining and semistructured interviews were conducted with six wheelchair basketball athletes, and data were analyzed using a reflexive thematic analysis. Athletes highlighted the important role that parasport coaches played in fostering an enjoyable wheelchair basketball environment and valued coaches who displayed expertise regarding their athletes’ equipment and had personal parasport athletic experiences. Additionally, athletes identified personal preferences, including coaches who addressed sex differences and maintained professional relationships at the national level as contributing factors to the coach–athlete relationship. The current results benefit both parasport coaches and athletes by providing a portrayal of coaching behaviors, characteristics, and expertise that not only influence the parasport coach–athlete dyad but also affect the well-being and athletic development of parasport athletes.

Topic: Spinal Cord Injury Research
Subfield: Pathology and Forensic Medicine
Field: Medicine
Domain: Health Sciences
More Aggressive Ant Species (Hymenoptera: Formicidae) Provide Better Protection for Soft Scales and Mealybugs (Homoptera: Coccidae, Pseudococcidae)

For 11 sets of interacting species near Madang, Papua New Guinea, coccoids attended by relatively inoffensive ants were more heavily parasitized than those attended by more aggressive ants. This has not been demonstrated previously. Ant exclusion experiments for four of these sets showed that this correlation was due to active protection of the coccoids from both predation and parasitization, though the precise form and effectiveness of this protection differed between different sets of interacting species.

Topic: Insect and Arachnid Ecology and Behavior
Subfield: Genetics
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
FIGURE 1 in Ten species of Culicoides Latreille (Diptera: Ceratopogonidae) newly recorded from Thailand

FIGURE 1. Wings of female biting midges newly recorded from Thailand: 1. C. tamada, 2. C. kinari, 3. C. parabubalus, 4. C. spiculae, 5. C. flavipunctatus, 6. C. hui, 7. C. quatei, 8. C. arenicola, 9. C. kusaiensis and 10. C. pseudocordiger.

Topic: Vector-Borne Animal Diseases
Subfield: Ecology, Evolution, Behavior and Systematics
Field: Agricultural and Biological Sciences
Domain: Life Sciences
INVESTIGATING ORGANISATION COMMITMENT AND ORGANISATIONAL STRESS BEHAVIOUR IN DISABLED (PARALYMPIC) ATHLETES

The aim of this study is to investigate the organizational stress and organisational commitments levels of disabled (Paralympic) sports players, whether demographic properties affect organizational commitment and organizational stress, and the relationship between organizational commitment and organizational stress.In this study, surveys were given to Turkish sports players who participated in the 2016 Rio Paralympics Games, from which the study sample was constructed.Frequency, Mann Whitney U, Kruskal Wallis, and Pearson correlation tests were used to analysis the data.The results of the analysis indicated that organisational stress and organisational commitment of physically disabled (Paralympic) athlete players were at moderate levels, there was no significant difference in organisational commitments and organisational stress levels in terms of demographical properties, and there was no significant relationship between organisational stress and organisational commitment.

Topic: Sports and Physical Education Research
Subfield: Physical Therapy, Sports Therapy and Rehabilitation
Field: Health Professions
Domain: Health Sciences
Infectious problems after elective surgery of the alimentary tract: the influence of peri-operative factors

A prospective multi-centre study was carried out on 1537 patients to investigate the influence of some peri-operative factors on the infectious complications after elective abdominal surgery in surgical departments where a standardized prophylactic antibiotic regimen is used regularly. The antibiotic regimen consisted of 1600 mg tinidazole and 400 mg doxycycline given intravenously 1-hour preoperatively. The results showed that total gastrectomy seemed to give higher infection rates than other gastroduodenal procedures. Low anterior and abdomino-perineal rectal resections were followed by more infectious complications than colonic resections, but this difference was significant only due to the perineal wound infections and failures of the low anterior anastomosis. Prolonged operation time was followed by increased number of infectious complications only when prophylaxis was not given. Blood transfusions led to a highly significant increase in infectious complications. Peri-operative surgical complications, splenectomy and stoma formation did not influence post-operative infectious complications.

Topic: Cardiac, Anesthesia and Surgical Outcomes
Subfield: Cardiology and Cardiovascular Medicine
Field: Medicine
Domain: Health Sciences