jimnoneill/paper-to-field-training huggingface dataset:
Clinical experience for Porphyromonas gingivalis detection in the cerebrospinal ţuid of patients with inţammatory diseases of the central nervous system and periodontitis

Background. Porphyromonas. gingivalis is one of the most aggressive periodontopathogens causing periodontitis. Present scientific evidence proves the possibility of the influence of P.gingivalis on the pathogenesis of inflammatory diseases of the central nervous system.&#x0D; Objective. To verify frequency of P.gingivalis detection within the cerebrospinal fluid of patients affected by various types of CNS inflammatory diseases.&#x0D; Material and Methods. Cerebrospinal fluid of 36 patients, aged 18 to 79 years, with various infectious diseases of the central nervous system was analyzed during two years of study. Real-time PCR technique was used for P.gingivalis detection.&#x0D; Results: 13 patients out of 36 demonstrated the presence of P.gingivalis within cerebrospinal fluid. 4 of them were diagnosed with meningoencephalitis, 3 patients had fever of unknown origin, at that one of them had Parkinson's disease, 3 patients had acute disseminated unspecified demyelination, 1 had multiple sclerosis, 1 had unspecified cerebrovascular disease. 77% of the total number of patients in whom P.gingivalis was detected in the cerebrospinal fluid, also were diagnosed with periodontitis.&#x0D; Conclusions: Based on the data obtained, it can be assumed that P.gingivalis plays a significant role in the pathogenesis of inflammatory diseases of the central nervous system. Sanitation of the oral cavity and timely treatment of periodontal diseases can significantly reduce the incidence of inflammatory diseases of the central nervous system.

Topic: Oral microbiology and periodontitis research
Subfield: Periodontics
Field: Dentistry
Domain: Health Sciences
A numerical reconstruction of the LGM Rhone Glacier and its ice dynamics

These datasets are part of chapter 4 in: Imhof, M. A., "Combined climate-ice flow modelling of the Alpine Ice Field during the Last Glacial Maximum", 2021, ETH Zurich, dissertation no. 27416, https://doi.org/10.3929/ethz-b-000471073 The datasets are from ice flow modelling experiments that aimed to reconstruct the Rhone Glacier during the Last Glacial Maximum and how its dynamics and boulder transport evolved. All datasets have a horizontal resolution of 2 km. The filename indicates the model settings that were used for the climate signal [EPICA], lambda [l2km], sliding parameter [C1=1000Paam-1 | C1=300Paam-1], and climate forcing [LGM+PD]. See table 4.1 in the thesis. The netcdf datasets contain the following variables: ice thickness (thk) bedrock elevation (topg) surface ice velocity (uvelsurf,vvelsurf) basal ice velocity/sliding velocity (uvelbase,vvelbase) pressure adjusted basal temperature (temppabase) An animation of the C1=300Paam-1 simulation can watched here. <em>This project was funded by the Swiss National Science Foundation (project 200021-162444).</em>

Topic: Cryospheric studies and observations
Subfield: Atmospheric Science
Field: Earth and Planetary Sciences
Domain: Physical Sciences
Parent-child interaction style and adjustment to pediatric cancer treatment

Substantial gains in the survival rate of children diagnosed with cancer have been achieved; however, a large body of evidence exists that children and their families are at increased psychosocial risk. Missing from our understanding is how real-time, moment-to-moment interactions build to long-term, developmental changes in child functioning. This project expands our understanding of the variation in child distress during procedures as well as long-term adjustment. Real-time coding and global ratings of parent and child behaviors were used to describe parent-child interactions in terms of dyadic flexibility and dyadic mutuality.\nTo carry out this project, a new system of collecting data needed to be created or an existing system needed to be adapted. Based on previously published examples and pilot testing, two systems were selected for adaptation for the current project. The SPAFF is a real-time coding system that uses a holistic approach of integrating verbal statements, non-verbal behaviors, and tone of voice to create an overall label of emotional state (Coan &amp; Gottman, 2007; Lunkenheimer et al., 2011). This system was used to examine emotional flexibility in a parent-child dyad during a hospital visit for a port start procedure that was part of the child’s cancer treatment regimen. Dyadic mutuality was adapted from the PARCHISY (Deater-Deckard et al., 1997) which uses global ratings of parents and children. The specific aims of this study were Aim 1: evaluate the implementation of the coding and rating system in a hospital setting, Aim 2: examine the association between child temperament and the observations of the parent-child dyad in the hospital room, Aim 3: investigate the association between parent-child hospital room behaviors and child distress &amp; cooperation during the procedure, and Aim 4: assess the predictive ability of parent-child hospital room behaviors on long-term child internalizing and externalizing problems.\nThe overall findings of this study support a model in which child ego-resilience is associated with parent-child hospital room behaviors. Parent-child hospital room flexibility and mutuality are associated with long-term child externalizing problems. These findings are consistent with previous work from the same research sample as well as the general child development literature.

Topic: Childhood Cancer Survivors' Quality of Life
Subfield: Pediatrics, Perinatology and Child Health
Field: Medicine
Domain: Health Sciences
Reviewer Acknowledgement

The practice of peer review is to ensure the research published in Current Issues in Sport Science (CISS) is of the highest standard. Peer review lies at the heart of scholarly publishing and is utilized by all reputable journals. Our referees and section editors play a crucial role in developing the reputation of Current Issues in Sport Science (CISS) to a leading forum for original research in the field. Therefore, I would like to formally thank all who have so willingly and voluntarily contributed to the journal in 2016.

Topic: Sports injuries and prevention
Subfield: Orthopedics and Sports Medicine
Field: Medicine
Domain: Health Sciences
Molecular dynamics simulation data of regulatory ACT domain dimer mutation (K42I) of human phenylalanine hydroxylase (PAH)

Raw data of molecular dynamics simulations of regulatory ACT domain dimer mutation (K42I). <strong>binding.zip</strong>: simulation of dimer with 19 Phe ligand <strong>bound.zip</strong>: simulation of dimer with bound Phe ligand <strong>dimer.zip</strong>: simulation of dimer only Simulation setup files are also included in each folder.

Topic: Metabolomics and Mass Spectrometry Studies
Subfield: Molecular Biology
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
Genetic markers for hypertension – a genetic epidemiological study of 5000 Romanian individuals

Abstract Background During the past decades, genetic research has reached new heights as next generation sequencing has rapidly taken over and genome-wide association studies (GWAS) have broug. The purpose of the research is to determin high-risk variants (Single-Nucleotide-Variants,SNVs) associated with hypertension (HTA) in the Romanian population. The current presentation asseses the final results of a 3 part study comprising the first and the largest GWAS on hypertension in Romanians. Material Methods The total cohort includes a number of 5690 individuals, of which 2190 with hypertension and 3500 heathy controls. Genetic testing was performed at in Iceland. A multiple GWAS assay has been performed for the identification of variants associated with hypertension, hypertension risk factors and hypertension comorbidities. Results Environmental (lifestyle) risk factors, such as smoking, alcohol consumption and coffee consumption, and also pathological risk factors, as are obesity and ageing, were analyzed in association with hypertension. Tissue-specific protein expression, gene function and gene-gene interactions have been analyzed for assessing a possible biological explanation of the association between the identified related variants and HTA. Expression quantitative trait loci (eQTL) were assessed for variants in the reported locations for a better understanding of their involvement in HTA. The results of the analysis revealed a number of over 5000 genetic variants statistically correlated with hypertension in the studied cohort, some well documented and in genes known to be involved in hypertension pathophysiology (clusters on chromosomes 1p36, 1q24, 3q24, 4p16, 5q12, 7q36, 12p12, 15q, 17q, 20q12, a.o. or CRNKL1, C19Orf12, CCDC51, C20Orf26, ZNF420, ZNF571, a.o. intragenic variants). Approx. 4100 SNVs were identified in correlation with diabetes mellitus and obesity. Variants correlated with both hypertension and DM were identified (TBX20,ANK2, a.o. genes). Two other variant clusters (p=10–4–10–3) on chromosomes 19 (19q12) and 20 (20p11.21) revealed statistical correlations with both hypertension and obesity. Conclusions The present study found some important loci and clusters associated with HTA, which migh provide insights into the genetic architecture of this pathology. The validity of these results for the Romanian population need to be confirmed by replication studies. The current research is part of the EU ProMark, ROMCAN and AppGenEdu projects. Funding Acknowledgement Type of funding source: None

Topic: Nutrition, Genetics, and Disease
Subfield: Genetics
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
Reconciling Indigenous and Settler Language Interests: Language Policy Initiatives in Nunavut

This essay examines some of the issues that shape current debates about the development of language politics and language policies in Nunavut. It considers the demography of language use in Nunavut and examines how Inuit and federal government perspectives have shaped the broader political and constitutional context in which language policy is being addressed. It then considers the institutional context that shapes language policy development in Nunavut, before examining two key interconnected language policy arenas in Nunavut: the language of instruction in schools and the language of work in government. Finally, the essay considers recent language legislation in Nunavut, highlighting how this seeks to combine a rights-oriented/anti-discrimination approach to official languages with legislation to protect the Inuit Language from further erosion.

Topic: Multilingual Education and Policy
Subfield: Linguistics and Language
Field: Social Sciences
Domain: Social Sciences
Development of the Cardiac Blood Vessels in Staged Human Embryos

Serial paraffin sections (mostly stained with hematoxylin and eosin) of 52 human embryos at stages ranging from 13 to 20 (approximate ovulation age of 5–8 weeks) were examined. The first sign of definitive blood vessels was found to be localized in the apical incisure of the heart of an embryo at stage 14. Blood vessels of this kind closely resembled ‘blood islands’ in appearance, being composed of primitive erythroblasts surrounded by an outer layer of endothelium. At stage 16, a funnel-like invagination of the endothelium was recognized in the posterior wall of the sinus venosus. This structure was considered to represent one of the cardiac veins (probably the middle cardiac vein). A faint endothelial sprout of the left coronary artery was detected at stage 18, while the right one was observed later, at stage 19. Finally, at stage 20, both of the coronary arteries invariably existed with a covering of mesenchymal cells.

Topic: Congenital Heart Disease Studies
Subfield: Epidemiology
Field: Medicine
Domain: Health Sciences
Recent results of the TierPET scanner

At the Forschungszentnum Julich a high resolution positron emission tomograph (TierPET) for imaging small laboratory animals, especially rats, has been constructed. The scanner is based on arrays of YAP crystals. As a special feature the detector distances can be varied continuously from 16 to 58 cm. Due to the variable detector distances the performance of the scanner has to be evaluated in various configurations. Special attention was paid to dedicated data acquisition protocols and adequate applications with regard to the system sensitivity.

Topic: Medical Imaging Techniques and Applications
Subfield: Radiology, Nuclear Medicine and Imaging
Field: Medicine
Domain: Health Sciences
Errors in spectrochemical (flame) analysis

Abstract In an attempt to use the equipment available for the determination of the exchangeable cations in soils, u statistical analysis has been made of the errors in the spectrochemical results obtained by means of an air‐acetylene flame and a large quartz, spectrograph. Even with an elementary technique, an average standard error of less than 4% was obtained. Factors contributing to the total error, such as the error of a microphotometer reading, fluctuations of the flame, and variations of the photographic emulsion, have been studied; two types of plate, sensitised and non‐sensitised, have been examined, It has been shown that most of the total error was due to variations in the photographic plates, and the significance of this in relation to the placement of the standard spectrograms on a plate is discussed. It has been found that, in general, a large quartz spectrograph is not suitable for use with an air‐acetylene Hume because the very low light‐collecting power of the instrument necessitates very long exposures or the use of solutions of impracticably high concentrations, or sometimes both.

Topic: Water Quality Monitoring and Analysis
Subfield: Industrial and Manufacturing Engineering
Field: Environmental Science
Domain: Physical Sciences
Geographical Indication As A Tool For Revitalizing Endangered Traditions And Sustaining Livelihoods

Geographical indications (GIs) allude to items with explicit attributes, features or notorieties coming about because of their geological beginning. This separates items in light of remarkable neighborhood elements, history or particular qualities connected to normal and human variables, like soil, environment, nearby ability, and customs. GIs are perceived as intellectual property rights (IPRs) as well as thusly provide both a supportive promoting device and insurance of the name. GIs can be utilized to encourage sustainable food systems and sustainable development (SD) by subsequent Food and Agriculture Organization of the United Nations (FAO) practice of the virtuous ring of origin-linked quality. On the off chance that they live up to their capability to advance financial turn of events and food security, they could give a promising regional way to deal with accomplishment of the Sustainable Development Goals (SDGs). In this perspective, assuring economic feasibility is crucial, although there is scant empirical validation of the advantages of GIs, particularly in nations where GI processes are relatively new. Commencement with the authorized acknowledgement of a GI as well as the stages that follow, this research aims to offer empirical validation on the economic effects produced by the GI procedure. It examines nine cases with a focus on the food industry and provides a range of local value chains and national contexts. The strategy takes into account "operational" GI procedures: such where a training code (or determinations) is characterized and the GI is utilized as well as overseen by an aggregate association.

Topic: Organic Food and Agriculture
Subfield: Plant Science
Field: Agricultural and Biological Sciences
Domain: Life Sciences
A case study of the conservation value of a small tourist resort island: Birds of Rottnest Island, Western Australia 1905-2007

The avifauna of Rottnest Island, off the southwest coast of Western Australia, has been studied by three authorities from 1953?1963, 1980?1992 and 1998?2007. In addition, several annotated bird lists have been published since 1905. Over the period 1905 to 2007, 101 species have been recorded from the island, including 41 species of vagrant (species rarely seen with no pattern of occurrence) that have not changed in status over the 102 years. Of the 60 species recorded as part of the island?s avifauna, 24 have apparently not changed in status over that period. Thirty-five species have changed in status and/or abundance, including nine species of transequatorial migrant; all Charadriiformes. Seven of these species were formerly absent or vagrants but now are regular visitors, several possibly as a result of range extensions. Two species of transequatorial migrant, formerly regarded as members of the island?s avifauna, have become vagrants. Six passerine and one non-passerine species have resident populations that are isolated on the island with no populations on the adjacent mainland. Populations of three of these species are sufficiently different from mainland populations to constitute conservation management units. Rottnest Island is managed as a holiday resort. In the past this management has compromised some of the conservation values. Recommendations for dedicated monitoring programmes and management for the conservation of the island?s avifauna are provided.

Topic: Wildlife Ecology and Conservation
Subfield: Ecology
Field: Environmental Science
Domain: Physical Sciences
The neopaleozoic sequence of the Agua de Jagüel Creek (Precordillera de Mendoza): Age and stratigraphic redefinition

The name of the Cordon de Jaguel Formation is proposed for Permian sandstones, mudstones and scarce conglomerates that form the western slope of the Cordon de Agua de Jaguel range in the Precordillera (Mendoza Province). These rocks unconformably overlie low-grade metamorphic rocks belonging to the Villavicencio Formation and are separated by a fault from sandstones, mudstones and diamictites of the Agua de Jaguel Formation (Pennsylvanian). Six facies association have been recognized in the Cordon de Jaguel Formation. The association 1 is composed of conglomerates and coarse-grained sandstones deposited in fluvial environment. The onset of a sea-level rise is recorded in the facies association 2, which is formed by sandstones and carbonaceous mudstones sedimented in transitional environments (estuarine?). Facies association 3 is made up by fine-grained sandstones indicating the transition to coastal marine settings while facies association 4, formed by large-scale cross-bedded sandstones, was very probably deposited in subtidal coastal environments. A progressive shallowing appears in the carbonaceous mudstones, fine-grained sandstones and marls forming the facies association 5 deposited in a transitional environment (lagoons). Finally, facies association 6 (shales and fine-grained sandstones) indicates a new sea level rise. Remains of the marine invertebrates belonging to the Costatumulus Biozone and palynofloras containing Lueckisporites virkkiae Potonie and Klaus suggest an early Permian age, probably late Cisuralian, for the unit.litic layer. Proximal non-amalgamated storm deposits are represented by thick sandy beds with hummocky cross stratification, bioclastic accumulations and ripples at the top intercalated with thin shaly levels. Distal storm deposits are thinly laminated o massive silty to sandy beds intercalated in shaly intervals.

Topic: Geological formations and processes
Subfield: Earth-Surface Processes
Field: Earth and Planetary Sciences
Domain: Physical Sciences
MENTAL HEALTH FROM THE LENS OF COMMUNITY PSYCHOLOGY: A QUALITATIVE VIEW

The concept of mental health is abstract in nature and is hence difcult to be understood. This led the present investigators to attempt to have a cognizance of mental health from community psychology perspective. Aqualitative research purview towards studying the concept by embracing a community-based participatory research paradigm was adopted for the purpose. The social-ecological model as well as the blended model were used to arrive at qualitative interviewing of community stakeholders like psychologists, psychiatrists, patients, public health professionals and qualitative researchers. Focus group discussions were conducted with the members of community advisory board (CAB) to arrive at a rich understanding of the concept. It was ensured that representatives of law, visual media, policy makers, religious leaders and other professionals were included in the sample. People suffering from mental illness (with insight), mental health professionals, and caregivers were also approached to seek their valuable opinion. Transcription and analysis of data followed to extract meaning of the rich information obtained. The study found less streamlined knowledge regarding mental health concept and allied issues. The ndings are important not only to provide clarity to the concept of mental health, but also to address the related stigma and taboos. They are important for mass awareness of citizens in the country and for improving the stay-quality of individuals by promoting their well-being in general.

Topic: Mental Health Treatment and Access
Subfield: Social Psychology
Field: Psychology
Domain: Social Sciences
Application of 16-slice spiral CT Angiography in Diagnosis of Intracranial Aneurysm

Objective To assess the value of 16-slice spiral CT angiography(CTA)in detecting intracranial aneurysm.Methods 28 patients suspected with intracranial aneurysms underwent CTA and DSA examination,CTA features of aneurysms were retrospectively analysed in comparison with that of DSA and operation.Results 27 intracranial aneurysms in 28 cases were detected by CTA,of them,25 were confirmed by DSA and surgery.Two aneurysms were showed in one cases by CTA,but only one was showed by DSA.In another one case,two aneurysms suspected by CTA,but was normal on DSA.The sensitivity,specificity and accuracy of 16-slice spiral CTA in detecting the aneurysms were 89.2%,100% and 94.6% respectively.Conclusion 16-slice spiral CTA is the same as DSA in displaying intracranial aneurysms,therefore,CTA has very important clinical value in diagnosis of intracranical aneurysms.

Topic: Intracranial Aneurysms: Treatment and Complications
Subfield: Neurology
Field: Medicine
Domain: Health Sciences
Self-regulated learning of first-year students at physics education department, FKIP – Universitas Syiah Kuala

Abstract This study examines the problem of how the criteria for self-regulated learning of first-year students at the Physics Education Department and aims to determine the self-regulated learning of freshman year students in the department. Quantitative research methods and descriptive approaches used in this study. A total of 61 students in 2017 became research subjects and obtained 83.60% of students believed in their abilities (criteria; very independent), 75.40% of students were satisfied with their effort (criteria; independent), 70.50% of students were able to make decisions and have learning initiatives (criteria; independent), and 62.30% of students are responsible for their studies (criteria; independent). That shows the Physics Education Department, FKIP Unsyiah class of 2018 has the self-regulated learning with independent to very independent criteria. The results of the study become a reference for the preparation and improvement of the curriculum.

Topic: Technology-Enhanced Education Studies
Subfield: Education
Field: Social Sciences
Domain: Social Sciences