jimnoneill/paper-to-field-training huggingface dataset:
Calculating four-loop massless propagators with Forcer

We present Forcer, a new FORM program for the calculation of four-loop massless propagators. The basic framework is similar to that of the Mincer program for three-loop massless propagators: the program reduces Feynman integrals to a set of master integrals in a parametric way. To overcome an ineludible complexity of the program structure at the four-loop level, most of the code was automatically generated or made with computer-assisted derivations. Correctness of the program has been checked with the recomputation of some quantities in the literature.

Topic: Particle physics theoretical and experimental studies
Subfield: Nuclear and High Energy Physics
Field: Physics and Astronomy
Domain: Physical Sciences
SARS-CoV-2 in the Amazon region: A harbinger of doom for Amerindians

As the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) pandemic continues to expand, healthcare resources globally have been spread thin. Now, the disease is rapidly spreading across South America, with deadly consequences in areas with already weakened public health systems. The Amazon region is particularly susceptible to the widespread devastation from Coronavirus disease 2019 (COVID-19) because of its immunologically fragile native Amerindian inhabitants and epidemiologic vulnerabilities. Herein, we discuss the current situation and potential impact of COVID-19 in the Amazon region and how further spread of the epidemic wave could prove devastating for many Amerindian people living in the Amazon rainforest.

Topic: Indigenous Health and Education
Subfield: General Health Professions
Field: Health Professions
Domain: Health Sciences
Embodiment

In our project, ethnographic methods of participant observation and interviews were infused with arts-based methods of creating artefacts – collaging, impromptu video making, shared text-making, photography; these practices, as they become normalized within our research ethos, served as ‘weirs’ and interrupted the flow of received meanings that are embedded often in the labels ascribed to young people by the systems of schooling and justice. Embodiment is a word that tries to capture what is left of a project. This chapter, even with the inclusion of words, images and a cacophony of form, still offers only a partial glimpse of the affective traces that took root in the circle within us and the one that we draw around us, together.

Topic: Participatory Visual Research Methods
Subfield: Sociology and Political Science
Field: Social Sciences
Domain: Social Sciences
Trade Openness and Carbon Emissions: Evidence from Central and Eastern Europe

Using a composite trade share measure of trade openness, we examined the effects of trade openness on carbon dioxide emission for a sample of 17 Central and Eastern European (CEE) countries over the period 1994 to 2014. We found that high trade openness is associated with low carbon emission in the long run. When compared with the simple measure of trade openness (i.e. total trade as a percentage of GDP), the composite measure indicates that the effect of openness on carbon emission in the long run is smaller in absolute terms. Moreover, while high openness is associated with high emission in the short run using the simple measure, this association is non-existent when using the composite measure. These findings are robust to two historically closed economies and the recent Global Financial Crisis. When testing the Environmental Kuznets Curve (EKC) hypothesis using the composite measure, we found evidence in support of this in the long run. This finding connotes that high openness is associated with low emission in the long run, but up to a certain level of openness. That is, there is a turning point for openness beyond which further openness may spur high emission. Overall, our findings clearly suggest, to a large extent, that the measure of trade openness matters.

Topic: Energy, Environment, Economic Growth
Subfield: Economics and Econometrics
Field: Economics, Econometrics and Finance
Domain: Social Sciences
Problems of Paleogene–Neogene stratigraphy of the Zerkal’naya depression, East Sikhote Alin

The Paleogene–Neogene stratigraphic scale of the Zerkal’naya River basin is modified with account for new isotopic and paleobotanical data. It is established that the Tadushi Formation and underlying volcanics, which were previously considered as representing transitional Cretaceous–Paleocene strata, are separated in the section of the Ustinovka quarry by a significant stratigraphic hiatus. According to the new data, the volcanics and the Tadushi Formation are established as Campanian and Late Paleocene in age, respectively. The Bogopol Formation in the type section is dated back to the Middle–Late Paleocene. The Svetlyi Formation is now considered to be Early Eocene in age, rather than Late Eocene–Oligocene as previously thought. A new variant of the stratigraphic scale is proposed for the Paleogene–Neogene deposits of the Zerkal’naya depression.

Topic: Geological and Geochemical Analysis
Subfield: Geophysics
Field: Earth and Planetary Sciences
Domain: Physical Sciences
Differences between EFL Beginners and Intermediate Level Readers When Reading Onscreen Narrative Text with Pictures: A Study of Eye Movements as a Guide to Personalization

Compared to reading text alone, pictures are regarded as easier for readers to comprehend the context. For EFL readers, their reading behavior on text with pictures needs to be carefully inspected. The study aims to examine how different are the viewing behaviors of EFL beginners versus intermediate readers on reading narrative paragraphs and accompanying pictures. Seventeen junior high and twenty-one senior high students represented as EFL beginners and intermediate readers, respectively. Both of them read consecutively three screens with narrative texts and pictures illustrating the texts. The results showed that both beginners and intermediate readers paid more attention to the texts than the pictures. The beginners almost solely fixated on the texts and few fixations fell on to the pictures while the intermediates had more fixations on both texts and pictures. The eye-movement data in the specific AOIs showed that the intermediates made more references between text and pictures when they encountered difficult words or processed semantic meaning making. The beginners were less efficient in reading, having less fixated time on each screen, and encountered greater difficulties in comprehension than the intermediates. Based on eye-movement data, a personalized strategy to alter display sequence could be provided to support EFL beginners: Before going into narrative reading, a reminding message could be dispatched onscreen guiding them to view standalone pictures and to inspect pictorial components carefully to serve as the macro-reading strategy. The personalization could also be realized by posting cognitive and meta-cognitive level questions during the inspection of picture.

Topic: Subtitles and Audiovisual Media
Subfield: Language and Linguistics
Field: Arts and Humanities
Domain: Social Sciences
Clinical factors associated with the recurrence of central giant cell lesions

Abstract Central giant cell lesion of the jaws (CGCLJ) is a destructive condition that shows a varied and unpredictable biological behaviour. In the present study, we aimed to evaluate factors associated with the recurrence of CGCLJ. Based on the data of a previous systematic review of 2270 cases of CGCLJ, we used the multiple imputation to deal with the missing data. The dependent variable was the recurrence after the first treatment (yes/no). The dichotomic covariates were sex, upper or lower jaw location, size (up to or larger than 4 cm), pain, cortical bone perforation (yes/no), locularity (uni‐/multilocular), tooth displacement (yes/no), treatment type (curettage or enucleation) and root resorption (yes/no). The final logistic model indicated that the tumours associated with tooth displacement, root resorption and treated with curettage had a more significant chance of recurrence. In conclusion, our study suggests that tooth displacement, root resorption and the type of treatment are potentially useful in the future construction of an algorithm for patient's treatment.

Topic: Bone Tumor Diagnosis and Treatments
Subfield: Rheumatology
Field: Medicine
Domain: Health Sciences
Filipina survivors of sexual violence negotiating family values

According to the 2010 U.S. Census, Filipinos are the second largest Asian ethnic group in&#13;\nCalifornia and while multiple studies have shown that Asian/Asian American women, including&#13;\nFilipina/Filipina Americans, underreport sexual violence and underutilize therapy and/or&#13;\ncounseling, research is lacking. The Filipino culture is collectivist, centered on the family. And in&#13;\ninstances of sexual violence, Filipina survivors face challenging healing processes. Through&#13;\nqualitative in-depth interviews with eight self-identified Filipina survivors of sexual violence,&#13;\nages 18 years of age or older, mostly from the San Francisco Bay Area, they share their stories&#13;\nand how they negotiate a contradictory patriarchal triangle of the Filipino family, historical&#13;\nSpanish Catholicism, and the pressures of American assimilation. Key findings illuminate how&#13;\nFilipina survivors o f sexual violence negotiate a triangle of contradictions through their&#13;\nunderstandings of the Filipino family, healing processes, identity formation, and overall visions&#13;\nof this work.

Topic: Sex work and related issues
Subfield: Sociology and Political Science
Field: Social Sciences
Domain: Social Sciences
The interaction between temporal grouping and phonotactic chunking in short-term serial order memory for novel verbal sequences

The current study investigated the ways long-term memory contributes to short-term serial order memory of novel verbal sequences, focusing on long-term knowledge of bi-element frequency, that is, co-occurrence frequency of two consecutive elements in a linguistic environment. Participants performed two types of immediate serial recall of nine-element (nine-mora) sequences: low bi-mora frequency sequences where all eight associations between the nine morae were low frequency, and mixed bi-mora frequency sequences, with high-frequency associations for six of the eight bi-morae. Experiment 1 confirmed the bi-directional bi-mora frequency effect, meaning better recall performance for morae having high-frequency association with either the preceding mora (forward association) or the following mora (backward association). In Experiment 2, two temporal pauses were inserted in each list to disrupt high-frequency associations with the preceding mora or the following mora. The results showed that the bi-element frequency effect diminished when the high-frequency backward association was disrupted but the effect remained when the high-frequency forward association was disrupted. We discuss possible mechanisms underlying the asymmetric influence of temporal pauses on interactions between short-term memory and linguistic long-term memory.

Topic: Neurobiology of Language and Bilingualism
Subfield: Cognitive Neuroscience
Field: Neuroscience
Domain: Life Sciences
Surprising morphological diversity in ceraphronid wasps revealed by a distinctive new species of Aphanogmus (Hymenoptera: Ceraphronoidea)

Within the well-studied Palearctic entomofauna, it is often assumed that the discovery of new species is limited to resolving cryptic species complexes within dark taxa. Herein, we describe a highly distinctive species of Aphanogmus Thomson, 1858 (Hymenoptera: Ceraphronidae) from Germany and provide a COI barcoding sequence for the new species. We present a 3D reconstruction of the holotype based on micro-CT to serve as a cybertype. The females of Aphanogmus kretschmanni Moser sp. nov. are diagnosed by two rows of prominent spines on the ventral edge of the 7th metasomal sternite, a character set that has not previously been found in Hymenoptera. We analyse the functional morphology of the ovipositor mechanism and discuss hypotheses regarding the functional implications of the unique modification of the 7th metasomal sternite. Possible host associations are reviewed and the taxonomic placement of the new species is discussed.

Topic: Plant and animal studies
Subfield: Ecology, Evolution, Behavior and Systematics
Field: Agricultural and Biological Sciences
Domain: Life Sciences
Beam Loss Monitors in the NSLS Storage Rings

Beam loss monitors (BLM) have been used for more than two decades in the VUV ring at the NSLS. These have proved useful for optimizing injection and operation of the ring. Recently similar monitors have been installed in the X-ray ring and are being used to better understand injection, as well as operation of the ring. These units have been compared with the Bergoz BLMs, which have been mostly useful for understanding operating beam losses.

Topic: Particle Accelerators and Free-Electron Lasers
Subfield: Electrical and Electronic Engineering
Field: Engineering
Domain: Physical Sciences
Multiplex Networks and Pan-Cancer Multiomics-Based Driver Gene Identification Using Graph Neural Networks

Identifying cancer driver genes has paramount significance in elucidating the intricate mechanisms underlying cancer development, progression, and therapeutic interventions. Abundant omics data and interactome networks provided by numerous extensive databases enable the application of graph deep learning techniques that incorporate network structures into the deep learning framework. However, most existing models primarily focus on individual network, inevitably neglecting the incompleteness and noise of interactions. Moreover, samples with imbalanced classes in driver gene identification hamper the performance of models. To address this, we propose a novel deep learning framework MMGN, which integrates multiplex networks and pan-cancer multiomics data using graph neural networks combined with negative sample inference to discover cancer driver genes, which not only enhances gene feature learning based on the mutual information and the consensus regularizer, but also achieves balanced class of positive and negative samples for model training. The reliability of MMGN has been verified by the Area Under the Receiver Operating Characteristic curves (AUROC) and the Area Under the Precision-Recall Curves (AUPRC). We believe MMGN has the potential to provide new prospects in precision oncology and may find broader applications in predicting biomarkers for other intricate diseases. Implementations of MMGN can be found at https://github.com/xingyili/MMGN.

Topic: Bioinformatics and Genomic Networks
Subfield: Molecular Biology
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
Translation in a World of Diglossia

This chapter explores what 'translation' meant in the literary culture of Java, Indonesia, during the eighteenth through the early twentieth centuries. It is possible to begin reconstructing the meanings of translation in Javanese society through a close reading of local translation terminology. The chapter contributes to the growing field of comparative translation history by focusing on a still little studied translation tradition, that of Java, Indonesia. In the sixteenth century, with the ongoing Islamization of Javanese society, translation activities shifted from the Indian-Sanskrit sources to ones deriving from Persian and Arabic. When considering the visibility or invisibility of translation processes, interlinear translations provide the clearest view of the source language. In the traditional teaching method in religious schools, a teacher would explain an Arabic-language treatise and provide Javanese glosses to the students. In a version of the text from the Pakualam court in Yogyakarta mention is made of a poet telling the story of the wise Serat Samud.

Topic: Translation Studies and Practices
Subfield: Language and Linguistics
Field: Arts and Humanities
Domain: Social Sciences
Characteristics of variations in the ground magnetic field during substorms at mid latitudes

Abstract. Substorms are known to cause geomagnetically induced currents (GIC) in power transmission lines through variations in the ground magnetic field. An improved knowledge and understanding of how the different phases of substorms affect the ground magnetic field will ultimately help to better understand how GIC arise. Although usually associated with high latitude power transmission networks, GIC potentially pose a risk to mid latitude networks such as the UK's National Grid. Using a list of substorm expansion phase onsets derived from auroral observations by the IMAGE-FUV satellite, this study examines 553 individual onsets. In order to cover mid latitudes, ground magnetometer data from the UK Sub-Auroral Magnetometer Network (SAMNET) are exploited. These high time resolution (5 s) data are used to study the ground magnetic field for an hour after onset, in particular the time derivative of the horizontal magnetic field, H. The data covers the period from 2000 to 2003 (just after solar maximum). Results are compared with a previous study of magnetic field variations at higher latitudes, using data with a much lower (1 min) cadence during substorms identified from geomagnetic indices during a period just after solar minimum.

Topic: Ionosphere and magnetosphere dynamics
Subfield: Astronomy and Astrophysics
Field: Physics and Astronomy
Domain: Physical Sciences
MEDICINAL BIOMAGNETISM IN THE TREATMENT OF UTERINE MYOMA – A PROTOCOL

Medicinal Biomagnetism (MB) is an Integrative and Complementary Practice in Health (PICS – Prática Integrativa e Complementar em Saúde) in Brazil. This therapeutic system was developed by Dr. Isaac Goiz Durán, in 1988. The practice consists of recognizing points with altered energy in the human body. Once the imbalances are identified and the bioenergetic dysfunctions corrected, it adjusts to the pH of the tissues involved and its health is restored. The MB uses Static Magnetic Fields (SMF) for the treatment in a non-invasive and easy to apply way. After more than 30 years of clinical practice, protocols for the treatment of various diseases were created. Uterine Fibroids or Myomas are benign smooth muscle tumors. There is an exaggerated growth of the myometrium cells in a delimited way, giving the myomas the appearance of nodules. The objective of this work is to present a protocol for the treatment and prevention of Uterine Fibroids. The methodology used in this study was a described bibliographic review of a quantitative and exploratory nature of related themes for the selection and presentation of the Uterine Fibroids Protocol. It can be used by health professionals, therapists or people who strive for self-responsibility in care, disease prevention or improvement in quality of life. It was concluded that it is important to continue producing scientific evidence related to the use of MB protocols, without leaving aside the preventive principle proposed by the PICS in Brazil, to simply stimulate self-care and self-management of quality of life.

Topic: Electromagnetic Fields and Biological Effects
Subfield: Biophysics
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
GROUNDWATER VULNERABILITY DETERMINATION OF NORTHEASTERN BOSNIA ACCORDING TO GLA METHOD

&amp;lt;p&amp;gt;The paper assesses the vulnerability of 27 groundwater bodies in the basin of the river Bosna, ie Spreča, then the river basin of the Drina river (Drinjača), as well as parts of the immediate Sava river basin (Čelić area - Gnjica river and Turija basin) by the GLA method. For each water body, the determination of the effective soil capacity, degree of infiltration and rock type was made, as well as the final assessment of the protective efficiency of the unsaturated zones soil covering.&amp;lt;/p&amp;gt;

Topic: Regional Development and Management Studies
Subfield: Economics and Econometrics
Field: Economics, Econometrics and Finance
Domain: Social Sciences
All-Atom Simulations Reveal Protein Charge Decoration in the Folded and Unfolded Ensemble Is Key in Thermophilic Adaptation

Thermophilic proteins denature at much higher temperature compared to their mesophilic homologues, in spite of high structural and sequential similarity. Computational approaches to understand this puzzle face three major challenges: (i) unfolded ensembles are usually neglected, (ii) simulation studies of the folded states are often too short, and (iii) the majority of investigations focus on a few protein pairs, obscuring the prevalence of different strategies across multiple protein systems. We address these concerns by carrying out all-atom simulations to characterize physicochemical properties of both the folded and the disordered ensemble in multiple (12) thermophilic-mesophilic homologous protein pairs. We notice two clear trends in most pairs (10 out of 12). First, specific distribution of charges in the native basin-sampled from multimicrosecond long Molecular Dynamics (MD) simulation trajectories-leads to more favorable electrostatic interaction energy in thermophiles compared to mesophiles. Next, thermophilic proteins have lowered electrostatic interaction in their unfolded state-generated using Monte Carlo (MC) simulation-compared to their mesophilic counterparts. The net contribution of interaction energy to folding stability, however, remains more favorable in thermophiles compared to mesophiles. The overall contribution of electrostatics quantified by combining the net interaction energy and the solvation penalty of folding-due to differential charge burial in the folded and the unfolded ensemble-is also mostly favorable in thermophilic proteins compared to mesophiles. The systems that deviate from this trend provide interesting test cases to learn more about alternate design strategies when modification of charges is not viable due to functional reasons. The unequal contribution of the unfolded state to the stability in thermophiles and mesophiles highlights the importance of modeling the disordered ensemble to understand thermophilic adaptation as well as protein stability, in general. Our integrated approach-combining finite element analysis with MC and MD-can be useful in designing charge mutations to alter protein stability.

Topic: Protein Structure and Dynamics
Subfield: Molecular Biology
Field: Biochemistry, Genetics and Molecular Biology
Domain: Life Sciences
Deflated BiCGStab for linear equations in QCD problems

The large systems of complex linear equations that are generated in QCD problems often have multiple right-hand sides (for multiple sources) and multiple shifts (for multiple masses).Deflated GMRES methods have previously been developed for solving multiple right-hand sides.Eigenvectors are generated during solution of the first right-hand side and used to speed up convergence for the other right-hand sides.Here we discuss deflating non-restarted methods such as BiCGStab.For effective deflation, both left and right eigenvectors are needed.Fortunately, with the Wilson matrix, left eigenvectors can be derived from the right eigenvectors.We demonstrate for difficult problems with kappa near κ c that deflating eigenvalues can significantly improve BiCGStab.We also will look at improving solution of twisted mass problems with multiple shifts.Projecting over previous solutions is an easy way to reduce the work needed.

Topic: Matrix Theory and Algorithms
Subfield: Computational Theory and Mathematics
Field: Computer Science
Domain: Physical Sciences